data_7YIS # _model_server_result.job_id bIT6o2pGCa2EE8jy6Ii2wA _model_server_result.datetime_utc '2025-07-27 09:04:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7YIS # _exptl.entry_id 7YIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 716.35 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YIS _cell.length_a 74.154 _cell.length_b 74.154 _cell.length_c 109.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H36 O22 P4' _chem_comp.formula_weight 716.35 _chem_comp.id 4PT _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0F C0E 4PT sing 1 n n O0F C0L 4PT sing 2 n n C0E C0C 4PT sing 3 n n C0E H0E1 4PT sing 4 n n C0E H0E2 4PT sing 5 n n C0C O0D 4PT sing 6 n n C0C C0B 4PT sing 7 n n C0C H0C 4PT sing 8 n n O0D C0G 4PT sing 9 n n C0B OP1 4PT sing 10 n n C0B H0B1 4PT sing 11 n n C0B H0B2 4PT sing 12 n n OP1 P1 4PT sing 13 n n P1 OP3 4PT sing 14 n n P1 OP2 4PT doub 15 n n P1 O1 4PT sing 16 n n OP3 HP3 4PT sing 17 n n O1 C1 4PT sing 18 n n C1 C2 4PT sing 19 n n C1 C6 4PT sing 20 n n C1 H1 4PT sing 21 n n C2 O2 4PT sing 22 n n C2 C3 4PT sing 23 n n C2 H2 4PT sing 24 n n O2 HA 4PT sing 25 n n C3 O3 4PT sing 26 n n C3 C4 4PT sing 27 n n C3 H3 4PT sing 28 n n O3 P3 4PT sing 29 n n P3 O11 4PT sing 30 n n P3 O10 4PT sing 31 n n P3 O12 4PT doub 32 n n O11 H11 4PT sing 33 n n O10 H10 4PT sing 34 n n C4 O4 4PT sing 35 n n C4 C5 4PT sing 36 n n C4 H4 4PT sing 37 n n O4 P4 4PT sing 38 n n P4 OP5 4PT sing 39 n n P4 OP6 4PT sing 40 n n P4 OP4 4PT doub 41 n n OP5 HP5 4PT sing 42 n n OP6 HP6 4PT sing 43 n n C5 O5 4PT sing 44 n n C5 C6 4PT sing 45 n n C5 H5 4PT sing 46 n n O5 P5 4PT sing 47 n n P5 OP8 4PT sing 48 n n P5 OP7 4PT sing 49 n n P5 OP9 4PT doub 50 n n OP8 HP8 4PT sing 51 n n OP7 HP7 4PT sing 52 n n C6 O6 4PT sing 53 n n C6 H6 4PT sing 54 n n O6 HB 4PT sing 55 n n C0L O0M 4PT doub 56 n n C0L C0N 4PT sing 57 n n C0N C0P 4PT sing 58 n n C0N H0N1 4PT sing 59 n n C0N H0N2 4PT sing 60 n n C0P C0Q 4PT sing 61 n n C0P H0P1 4PT sing 62 n n C0P H0P2 4PT sing 63 n n C0Q H0Q1 4PT sing 64 n n C0Q H0Q2 4PT sing 65 n n C0Q H0Q3 4PT sing 66 n n C0G O0H 4PT sing 67 n n C0G C0I 4PT sing 68 n n C0G H0G 4PT sing 69 n n O0H H0H 4PT sing 70 n n C0I C0J 4PT sing 71 n n C0I H0I1 4PT sing 72 n n C0I H0I2 4PT sing 73 n n C0J C0K 4PT sing 74 n n C0J H0J1 4PT sing 75 n n C0J H0J2 4PT sing 76 n n C0K H0K1 4PT sing 77 n n C0K H0K2 4PT sing 78 n n C0K H0K3 4PT sing 79 n n # _atom_sites.entry_id 7YIS _atom_sites.fract_transf_matrix[1][1] 0.013485 _atom_sites.fract_transf_matrix[1][2] 0.007786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4PT _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 483 _pdbx_nonpoly_scheme.pdb_mon_id 4PT _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O0F 4PT . . . B 2 22.543 -28.632 -2.014 1 71.78 ? O0F 4PT 401 A 1 HETATM 2 C C0E 4PT . . . B 2 21.526 -28.445 -1.067 1 68.26 ? C0E 4PT 401 A 1 HETATM 3 C C0C 4PT . . . B 2 21.05 -27.001 -1.157 1 73.94 ? C0C 4PT 401 A 1 HETATM 4 O O0D 4PT . . . B 2 19.768 -26.957 -1.729 1 77.51 ? O0D 4PT 401 A 1 HETATM 5 C C0B 4PT . . . B 2 21.02 -26.386 0.239 1 61.27 ? C0B 4PT 401 A 1 HETATM 6 O OP1 4PT . . . B 2 19.715 -26.43 0.744 1 57.98 ? OP1 4PT 401 A 1 HETATM 7 P P1 4PT . . . B 2 19.4 -25.411 1.953 1 55.06 ? P1 4PT 401 A 1 HETATM 8 O OP3 4PT . . . B 2 18.361 -26.108 2.975 1 65.29 ? OP3 4PT 401 A 1 HETATM 9 O OP2 4PT . . . B 2 18.8 -24.17 1.41 1 54.64 ? OP2 4PT 401 A 1 HETATM 10 O O1 4PT . . . B 2 20.776 -25.077 2.73 1 59.31 ? O1 4PT 401 A 1 HETATM 11 C C1 4PT . . . B 2 20.702 -24.236 3.851 1 53.35 ? C1 4PT 401 A 1 HETATM 12 C C2 4PT . . . B 2 21 -22.811 3.387 1 53.04 ? C2 4PT 401 A 1 HETATM 13 O O2 4PT . . . B 2 22.195 -22.819 2.651 1 53.19 ? O2 4PT 401 A 1 HETATM 14 C C3 4PT . . . B 2 21.113 -21.821 4.545 1 49.42 ? C3 4PT 401 A 1 HETATM 15 O O3 4PT . . . B 2 21.723 -20.645 4.093 1 49.67 ? O3 4PT 401 A 1 HETATM 16 P P3 4PT . . . B 2 20.81 -19.328 3.914 1 45.45 ? P3 4PT 401 A 1 HETATM 17 O O11 4PT . . . B 2 20.067 -18.943 5.294 1 47.79 ? O11 4PT 401 A 1 HETATM 18 O O10 4PT . . . B 2 21.754 -18.094 3.477 1 54.73 ? O10 4PT 401 A 1 HETATM 19 O O12 4PT . . . B 2 19.817 -19.599 2.849 1 49.56 ? O12 4PT 401 A 1 HETATM 20 C C4 4PT . . . B 2 22.02 -22.324 5.655 1 49.12 ? C4 4PT 401 A 1 HETATM 21 O O4 4PT . . . B 2 21.845 -21.496 6.764 1 50.68 ? O4 4PT 401 A 1 HETATM 22 P P4 4PT . . . B 2 23.088 -20.522 7.053 1 51.04 ? P4 4PT 401 A 1 HETATM 23 O OP5 4PT . . . B 2 22.654 -19.003 6.706 1 51.15 ? OP5 4PT 401 A 1 HETATM 24 O OP6 4PT . . . B 2 23.521 -20.639 8.606 1 44.75 ? OP6 4PT 401 A 1 HETATM 25 O OP4 4PT . . . B 2 24.231 -20.928 6.204 1 47.7 ? OP4 4PT 401 A 1 HETATM 26 C C5 4PT . . . B 2 21.758 -23.758 6.085 1 53.04 ? C5 4PT 401 A 1 HETATM 27 O O5 4PT . . . B 2 22.831 -24.089 6.921 1 58.34 ? O5 4PT 401 A 1 HETATM 28 P P5 4PT . . . B 2 22.461 -24.606 8.403 1 58.27 ? P5 4PT 401 A 1 HETATM 29 O OP8 4PT . . . B 2 22.036 -26.158 8.276 1 65.94 ? OP8 4PT 401 A 1 HETATM 30 O OP7 4PT . . . B 2 23.742 -24.458 9.381 1 50.28 ? OP7 4PT 401 A 1 HETATM 31 O OP9 4PT . . . B 2 21.335 -23.816 8.953 1 48.78 ? OP9 4PT 401 A 1 HETATM 32 C C6 4PT . . . B 2 21.719 -24.703 4.891 1 51.46 ? C6 4PT 401 A 1 HETATM 33 O O6 4PT . . . B 2 21.386 -25.993 5.332 1 52.81 ? O6 4PT 401 A 1 HETATM 34 C C0L 4PT . . . B 2 22.759 -29.936 -2.23 1 81.73 ? C0L 4PT 401 A 1 HETATM 35 O O0M 4PT . . . B 2 22.525 -30.742 -1.358 1 83.69 ? O0M 4PT 401 A 1 HETATM 36 C C0N 4PT . . . B 2 23.292 -30.388 -3.571 1 82.77 ? C0N 4PT 401 A 1 HETATM 37 C C0P 4PT . . . B 2 24.048 -31.706 -3.428 1 84.92 ? C0P 4PT 401 A 1 HETATM 38 C C0Q 4PT . . . B 2 25.383 -31.616 -4.16 1 74.79 ? C0Q 4PT 401 A 1 HETATM 39 C C0G 4PT . . . B 2 19.716 -25.984 -2.65 1 76.3 ? C0G 4PT 401 A 1 HETATM 40 O O0H 4PT . . . B 2 18.981 -25.039 -2.482 1 74.33 ? O0H 4PT 401 A 1 HETATM 41 C C0I 4PT . . . B 2 20.573 -26.064 -3.894 1 83.93 ? C0I 4PT 401 A 1 HETATM 42 C C0J 4PT . . . B 2 19.931 -26.99 -4.926 1 93.36 ? C0J 4PT 401 A 1 HETATM 43 C C0K 4PT . . . B 2 20.851 -28.168 -5.226 1 75.58 ? C0K 4PT 401 A 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #