data_7YIT
#
_model_server_result.job_id            AATyTUtzgnXc6lyycfPbZA 
_model_server_result.datetime_utc      '2025-02-05 09:38:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7YIT 
#
_exptl.entry_id    7YIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.564 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nalfurafine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YIT 
_cell.length_a            70.75 
_cell.length_b            76.53 
_cell.length_c            154.46 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 78 A CYS 131 1_555 A SG CYS 157 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 24 D CYS 24 1_555 B SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C28 H32 N2 O5' 
_chem_comp.formula_weight    476.564 
_chem_comp.id                IVB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nalfurafine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ~{N}-[(4~{R},4~{a}~{S},7~{R},7~{a}~{R},12~{b}~{S})-3-(cyclopropylmethyl)-4~{a},9-bis(oxidanyl)-1,2,4,5,6,7,7~{a},13-octahydro-4,12-methanobenzofuro[3,2-e]isoquinolin-7-yl]-3-(furan-3-yl)-~{N}-methyl-propanamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O04 C29 IVB doub 171 n n 
C28 N07 IVB sing 172 n n 
C29 N07 IVB sing 173 n n 
C29 C30 IVB sing 174 n n 
C34 O05 IVB sing 175 n y 
C34 C32 IVB doub 176 n y 
C31 C30 IVB doub 177 e n 
C31 C32 IVB sing 178 n n 
N07 C15 IVB sing 179 n n 
O05 C35 IVB sing 180 n y 
C32 C33 IVB sing 181 n y 
C15 C18 IVB sing 182 n n 
C15 C11 IVB sing 183 n n 
C35 C33 IVB doub 184 n y 
C18 C14 IVB sing 185 n n 
C11 O01 IVB sing 186 n n 
C11 C08 IVB sing 187 n n 
O01 C20 IVB sing 188 n n 
O03 C26 IVB sing 189 n n 
C14 C09 IVB sing 190 n n 
C20 C26 IVB doub 191 n y 
C20 C13 IVB sing 192 n y 
O02 C09 IVB sing 193 n n 
C26 C27 IVB sing 194 n y 
C08 C09 IVB sing 195 n n 
C08 C13 IVB sing 196 n n 
C08 C12 IVB sing 197 n n 
C09 C10 IVB sing 198 n n 
C13 C19 IVB doub 199 n y 
C12 C17 IVB sing 200 n n 
C27 C25 IVB doub 201 n y 
C19 C25 IVB sing 202 n y 
C19 C16 IVB sing 203 n n 
C10 C16 IVB sing 204 n n 
C10 N06 IVB sing 205 n n 
C17 N06 IVB sing 206 n n 
N06 C21 IVB sing 207 n n 
C21 C22 IVB sing 208 n n 
C22 C23 IVB sing 209 n n 
C22 C24 IVB sing 210 n n 
C23 C24 IVB sing 211 n n 
C10 H1 IVB sing 212 n n 
C15 H2 IVB sing 213 n n 
C17 H3 IVB sing 214 n n 
C17 H4 IVB sing 215 n n 
C21 H5 IVB sing 216 n n 
C21 H6 IVB sing 217 n n 
C22 H7 IVB sing 218 n n 
C24 H8 IVB sing 219 n n 
C24 H9 IVB sing 220 n n 
C28 H10 IVB sing 221 n n 
C28 H11 IVB sing 222 n n 
C28 H12 IVB sing 223 n n 
C11 H13 IVB sing 224 n n 
C12 H14 IVB sing 225 n n 
C12 H15 IVB sing 226 n n 
C14 H16 IVB sing 227 n n 
C14 H17 IVB sing 228 n n 
C16 H18 IVB sing 229 n n 
C16 H19 IVB sing 230 n n 
C18 H20 IVB sing 231 n n 
C18 H21 IVB sing 232 n n 
C23 H22 IVB sing 233 n n 
C23 H23 IVB sing 234 n n 
C25 H24 IVB sing 235 n n 
C27 H25 IVB sing 236 n n 
C30 H27 IVB sing 237 n n 
C31 H28 IVB sing 238 n n 
C33 H30 IVB sing 239 n n 
C34 H31 IVB sing 240 n n 
C35 H32 IVB sing 241 n n 
O02 H34 IVB sing 242 n n 
O03 H35 IVB sing 243 n n 
#
_atom_sites.entry_id                     7YIT 
_atom_sites.fract_transf_matrix[1][1]    0.014134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           IVB 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       IVB 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 IVB . . . D 4 15.767 18.228 -5.592 1 106.95 ? C10 IVB 401 A 1 
HETATM 2 C C13 IVB . . . D 4 15.506 20.794 -7.038 1 112.01 ? C13 IVB 401 A 1 
HETATM 3 C C15 IVB . . . D 4 16.144 19.397 -9.994 1 111.49 ? C15 IVB 401 A 1 
HETATM 4 C C17 IVB . . . D 4 13.574 19.115 -5.244 1 106.11 ? C17 IVB 401 A 1 
HETATM 5 C C20 IVB . . . D 4 15.265 21.84 -7.961 1 113.42 ? C20 IVB 401 A 1 
HETATM 6 C C21 IVB . . . D 4 14.651 17.858 -3.398 1 108.01 ? C21 IVB 401 A 1 
HETATM 7 C C22 IVB . . . D 4 14.863 16.44 -2.932 1 104.06 ? C22 IVB 401 A 1 
HETATM 8 C C24 IVB . . . D 4 15.371 16.189 -1.502 1 105.11 ? C24 IVB 401 A 1 
HETATM 9 C C26 IVB . . . D 4 15.783 23.173 -7.659 1 115.5 ? C26 IVB 401 A 1 
HETATM 10 C C28 IVB . . . D 4 16.95 20.013 -12.365 1 110.77 ? C28 IVB 401 A 1 
HETATM 11 C C08 IVB . . . D 4 14.876 19.482 -7.55 1 113.51 ? C08 IVB 401 A 1 
HETATM 12 C C09 IVB . . . D 4 15.577 18.18 -7.211 1 111.62 ? C09 IVB 401 A 1 
HETATM 13 C C11 IVB . . . D 4 14.815 19.802 -9.069 1 112.6 ? C11 IVB 401 A 1 
HETATM 14 C C12 IVB . . . D 4 13.485 19.283 -6.775 1 110.76 ? C12 IVB 401 A 1 
HETATM 15 C C14 IVB . . . D 4 16.858 17.893 -7.99 1 110.9 ? C14 IVB 401 A 1 
HETATM 16 C C16 IVB . . . D 4 16.364 19.59 -4.982 1 105.9 ? C16 IVB 401 A 1 
HETATM 17 C C18 IVB . . . D 4 16.738 18.054 -9.519 1 112.73 ? C18 IVB 401 A 1 
HETATM 18 C C19 IVB . . . D 4 16.228 20.898 -5.825 1 111.2 ? C19 IVB 401 A 1 
HETATM 19 C C23 IVB . . . D 4 16.306 16.011 -2.681 1 103.3 ? C23 IVB 401 A 1 
HETATM 20 C C25 IVB . . . D 4 16.713 22.207 -5.563 1 109.84 ? C25 IVB 401 A 1 
HETATM 21 C C27 IVB . . . D 4 16.51 23.311 -6.437 1 112.47 ? C27 IVB 401 A 1 
HETATM 22 C C29 IVB . . . D 4 14.727 18.885 -12.216 1 114.23 ? C29 IVB 401 A 1 
HETATM 23 C C30 IVB . . . D 4 13.507 18.194 -11.612 1 115.12 ? C30 IVB 401 A 1 
HETATM 24 C C31 IVB . . . D 4 13.411 16.836 -11.677 1 121.88 ? C31 IVB 401 A 1 
HETATM 25 C C32 IVB . . . D 4 12.368 15.912 -11.189 1 123.27 ? C32 IVB 401 A 1 
HETATM 26 C C33 IVB . . . D 4 11.817 15.808 -9.85 1 122.29 ? C33 IVB 401 A 1 
HETATM 27 C C34 IVB . . . D 4 11.72 14.911 -11.908 1 119.45 ? C34 IVB 401 A 1 
HETATM 28 C C35 IVB . . . D 4 10.876 14.79 -9.834 1 121.62 ? C35 IVB 401 A 1 
HETATM 29 N N06 IVB . . . D 4 14.45 17.965 -4.892 1 107.87 ? N06 IVB 401 A 1 
HETATM 30 N N07 IVB . . . D 4 15.896 19.399 -11.538 1 110.85 ? N07 IVB 401 A 1 
HETATM 31 O O01 IVB . . . D 4 14.536 21.252 -9.016 1 114.28 ? O01 IVB 401 A 1 
HETATM 32 O O02 IVB . . . D 4 14.625 17.214 -7.644 1 110.53 ? O02 IVB 401 A 1 
HETATM 33 O O03 IVB . . . D 4 15.612 24.269 -8.483 1 114.13 ? O03 IVB 401 A 1 
HETATM 34 O O04 IVB . . . D 4 14.683 18.965 -13.449 1 116.96 ? O04 IVB 401 A 1 
HETATM 35 O O05 IVB . . . D 4 10.818 14.243 -11.095 1 120.59 ? O05 IVB 401 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#