data_7YIU # _model_server_result.job_id OUKuH5R_0DSf4EXjTZ62Pw _model_server_result.datetime_utc '2024-11-22 00:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 7YIU # _exptl.entry_id 7YIU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 397.635 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YIU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H47 N O3' _chem_comp.formula_weight 397.635 _chem_comp.id 6CM _chem_comp.mon_nstd_flag . _chem_comp.name N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms C6-CERAMIDE;N-HEXANOYL-D-ERYTHRO-SPHINGOSINE;(2S,3R,4E)-2-HEXANOYLAMINOOCTADEC-4-ENE-1,3-DIOL;(2S,3R,4E)-2-HEXANOYLAMINO-1,3-OCTADEC-4-ENEDIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C19 6CM doub 1 n n C19 N2 6CM sing 2 n n C19 C20 6CM sing 3 n n N2 C2 6CM sing 4 n n N2 HN2 6CM sing 5 n n C2 C1 6CM sing 6 n n C2 C3 6CM sing 7 n n C2 H2 6CM sing 8 n n C1 O1 6CM sing 9 n n C1 H11 6CM sing 10 n n C1 H12 6CM sing 11 n n O1 HO1 6CM sing 12 n n C3 C4 6CM sing 13 n n C3 O3 6CM sing 14 n n C3 H3 6CM sing 15 n n C4 C5 6CM doub 16 e n C4 H4 6CM sing 17 n n C5 C6 6CM sing 18 n n C5 H5 6CM sing 19 n n C6 C7 6CM sing 20 n n C6 H61 6CM sing 21 n n C6 H62 6CM sing 22 n n C7 C8 6CM sing 23 n n C7 H71 6CM sing 24 n n C7 H72 6CM sing 25 n n C8 C9 6CM sing 26 n n C8 H81 6CM sing 27 n n C8 H82 6CM sing 28 n n C9 C10 6CM sing 29 n n C9 H91 6CM sing 30 n n C9 H92 6CM sing 31 n n C10 C11 6CM sing 32 n n C10 H101 6CM sing 33 n n C10 H102 6CM sing 34 n n C11 C12 6CM sing 35 n n C11 H111 6CM sing 36 n n C11 H112 6CM sing 37 n n C12 C13 6CM sing 38 n n C12 H121 6CM sing 39 n n C12 H122 6CM sing 40 n n C13 C14 6CM sing 41 n n C13 H131 6CM sing 42 n n C13 H132 6CM sing 43 n n C14 C15 6CM sing 44 n n C14 H141 6CM sing 45 n n C14 H142 6CM sing 46 n n C15 C16 6CM sing 47 n n C15 H151 6CM sing 48 n n C15 H152 6CM sing 49 n n C16 C17 6CM sing 50 n n C16 H161 6CM sing 51 n n C16 H162 6CM sing 52 n n C17 C18 6CM sing 53 n n C17 H171 6CM sing 54 n n C17 H172 6CM sing 55 n n C18 H181 6CM sing 56 n n C18 H182 6CM sing 57 n n C18 H183 6CM sing 58 n n O3 HO3 6CM sing 59 n n C20 C21 6CM sing 60 n n C20 H201 6CM sing 61 n n C20 H202 6CM sing 62 n n C21 C22 6CM sing 63 n n C21 H211 6CM sing 64 n n C21 H212 6CM sing 65 n n C22 C23 6CM sing 66 n n C22 H221 6CM sing 67 n n C22 H222 6CM sing 68 n n C23 C24 6CM sing 69 n n C23 H231 6CM sing 70 n n C23 H232 6CM sing 71 n n C24 H241 6CM sing 72 n n C24 H242 6CM sing 73 n n C24 H243 6CM sing 74 n n # _atom_sites.entry_id 7YIU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 PLP B 1 601 601 PLP PLP . G 7 6CM D 1 801 801 6CM 6CM . H 8 R16 D 1 802 901 R16 POV . I 8 R16 D 1 803 902 R16 POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 6CM . . . G 7 122.701 168.786 139.259 1 20 ? O19 6CM 801 D 1 HETATM 2 C C19 6CM . . . G 7 123.37 168.016 139.915 1 20 ? C19 6CM 801 D 1 HETATM 3 N N2 6CM . . . G 7 123.008 166.76 140.151 1 20 ? N2 6CM 801 D 1 HETATM 4 C C2 6CM . . . G 7 121.909 166.406 141.025 1 20 ? C2 6CM 801 D 1 HETATM 5 C C1 6CM . . . G 7 120.86 165.628 140.242 1 20 ? C1 6CM 801 D 1 HETATM 6 O O1 6CM . . . G 7 121.067 164.219 140.399 1 20 ? O1 6CM 801 D 1 HETATM 7 C C3 6CM . . . G 7 122.413 165.586 142.208 1 20 ? C3 6CM 801 D 1 HETATM 8 C C4 6CM . . . G 7 122.862 166.5 143.321 1 20 ? C4 6CM 801 D 1 HETATM 9 C C5 6CM . . . G 7 124.131 166.494 143.713 1 20 ? C5 6CM 801 D 1 HETATM 10 C C6 6CM . . . G 7 124.569 167.415 144.825 1 20 ? C6 6CM 801 D 1 HETATM 11 C C7 6CM . . . G 7 123.638 168.619 144.891 1 20 ? C7 6CM 801 D 1 HETATM 12 C C8 6CM . . . G 7 124.24 169.722 145.753 1 20 ? C8 6CM 801 D 1 HETATM 13 C C9 6CM . . . G 7 123.193 170.351 146.66 1 20 ? C9 6CM 801 D 1 HETATM 14 C C10 6CM . . . G 7 123.686 171.68 147.215 1 20 ? C10 6CM 801 D 1 HETATM 15 C C11 6CM . . . G 7 124.016 171.572 148.697 1 20 ? C11 6CM 801 D 1 HETATM 16 C C12 6CM . . . G 7 125.034 172.627 149.108 1 20 ? C12 6CM 801 D 1 HETATM 17 C C13 6CM . . . G 7 124.41 174.016 149.139 1 20 ? C13 6CM 801 D 1 HETATM 18 C C14 6CM . . . G 7 125.153 174.934 150.103 1 20 ? C14 6CM 801 D 1 HETATM 19 C C15 6CM . . . G 7 126.236 175.73 149.385 1 20 ? C15 6CM 801 D 1 HETATM 20 C C16 6CM . . . G 7 126.524 177.033 150.118 1 20 ? C16 6CM 801 D 1 HETATM 21 C C17 6CM . . . G 7 125.273 177.549 150.812 1 20 ? C17 6CM 801 D 1 HETATM 22 C C18 6CM . . . G 7 125.579 178.776 151.64 1 20 ? C18 6CM 801 D 1 HETATM 23 O O3 6CM . . . G 7 121.354 164.752 142.681 1 20 ? O3 6CM 801 D 1 HETATM 24 C C20 6CM . . . G 7 124.687 168.462 140.497 1 20 ? C20 6CM 801 D 1 HETATM 25 C C21 6CM . . . G 7 125.046 169.854 139.994 1 20 ? C21 6CM 801 D 1 HETATM 26 C C22 6CM . . . G 7 126.174 170.451 140.829 1 20 ? C22 6CM 801 D 1 HETATM 27 C C23 6CM . . . G 7 125.635 171.451 141.844 1 20 ? C23 6CM 801 D 1 HETATM 28 C C24 6CM . . . G 7 126.634 171.713 142.948 1 20 ? C24 6CM 801 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 28 #