data_7YIU
#
_model_server_result.job_id            1zwZJIOo3JBLzAkLNX4GUw 
_model_server_result.datetime_utc      '2024-11-04 18:53:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yiu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    7YIU 
#
_exptl.entry_id    7YIU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              397.635 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YIU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H47 N O3' 
_chem_comp.formula_weight    397.635 
_chem_comp.id                6CM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)HEXANAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     C6-CERAMIDE;N-HEXANOYL-D-ERYTHRO-SPHINGOSINE;(2S,3R,4E)-2-HEXANOYLAMINOOCTADEC-4-ENE-1,3-DIOL;(2S,3R,4E)-2-HEXANOYLAMINO-1,3-OCTADEC-4-ENEDIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O19 C19 6CM doub 1 n n 
C19 N2 6CM sing 2 n n 
C19 C20 6CM sing 3 n n 
N2 C2 6CM sing 4 n n 
N2 HN2 6CM sing 5 n n 
C2 C1 6CM sing 6 n n 
C2 C3 6CM sing 7 n n 
C2 H2 6CM sing 8 n n 
C1 O1 6CM sing 9 n n 
C1 H11 6CM sing 10 n n 
C1 H12 6CM sing 11 n n 
O1 HO1 6CM sing 12 n n 
C3 C4 6CM sing 13 n n 
C3 O3 6CM sing 14 n n 
C3 H3 6CM sing 15 n n 
C4 C5 6CM doub 16 e n 
C4 H4 6CM sing 17 n n 
C5 C6 6CM sing 18 n n 
C5 H5 6CM sing 19 n n 
C6 C7 6CM sing 20 n n 
C6 H61 6CM sing 21 n n 
C6 H62 6CM sing 22 n n 
C7 C8 6CM sing 23 n n 
C7 H71 6CM sing 24 n n 
C7 H72 6CM sing 25 n n 
C8 C9 6CM sing 26 n n 
C8 H81 6CM sing 27 n n 
C8 H82 6CM sing 28 n n 
C9 C10 6CM sing 29 n n 
C9 H91 6CM sing 30 n n 
C9 H92 6CM sing 31 n n 
C10 C11 6CM sing 32 n n 
C10 H101 6CM sing 33 n n 
C10 H102 6CM sing 34 n n 
C11 C12 6CM sing 35 n n 
C11 H111 6CM sing 36 n n 
C11 H112 6CM sing 37 n n 
C12 C13 6CM sing 38 n n 
C12 H121 6CM sing 39 n n 
C12 H122 6CM sing 40 n n 
C13 C14 6CM sing 41 n n 
C13 H131 6CM sing 42 n n 
C13 H132 6CM sing 43 n n 
C14 C15 6CM sing 44 n n 
C14 H141 6CM sing 45 n n 
C14 H142 6CM sing 46 n n 
C15 C16 6CM sing 47 n n 
C15 H151 6CM sing 48 n n 
C15 H152 6CM sing 49 n n 
C16 C17 6CM sing 50 n n 
C16 H161 6CM sing 51 n n 
C16 H162 6CM sing 52 n n 
C17 C18 6CM sing 53 n n 
C17 H171 6CM sing 54 n n 
C17 H172 6CM sing 55 n n 
C18 H181 6CM sing 56 n n 
C18 H182 6CM sing 57 n n 
C18 H183 6CM sing 58 n n 
O3 HO3 6CM sing 59 n n 
C20 C21 6CM sing 60 n n 
C20 H201 6CM sing 61 n n 
C20 H202 6CM sing 62 n n 
C21 C22 6CM sing 63 n n 
C21 H211 6CM sing 64 n n 
C21 H212 6CM sing 65 n n 
C22 C23 6CM sing 66 n n 
C22 H221 6CM sing 67 n n 
C22 H222 6CM sing 68 n n 
C23 C24 6CM sing 69 n n 
C23 H231 6CM sing 70 n n 
C23 H232 6CM sing 71 n n 
C24 H241 6CM sing 72 n n 
C24 H242 6CM sing 73 n n 
C24 H243 6CM sing 74 n n 
#
_atom_sites.entry_id                     7YIU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 PLP B 1 601 601 PLP PLP . 
G 7 6CM D 1 801 801 6CM 6CM . 
H 8 R16 D 1 802 901 R16 POV . 
I 8 R16 D 1 803 902 R16 POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O19 6CM . . . G 7 122.701 168.786 139.259 1 20 ? O19 6CM 801 D 1 
HETATM 2 C C19 6CM . . . G 7 123.37 168.016 139.915 1 20 ? C19 6CM 801 D 1 
HETATM 3 N N2 6CM . . . G 7 123.008 166.76 140.151 1 20 ? N2 6CM 801 D 1 
HETATM 4 C C2 6CM . . . G 7 121.909 166.406 141.025 1 20 ? C2 6CM 801 D 1 
HETATM 5 C C1 6CM . . . G 7 120.86 165.628 140.242 1 20 ? C1 6CM 801 D 1 
HETATM 6 O O1 6CM . . . G 7 121.067 164.219 140.399 1 20 ? O1 6CM 801 D 1 
HETATM 7 C C3 6CM . . . G 7 122.413 165.586 142.208 1 20 ? C3 6CM 801 D 1 
HETATM 8 C C4 6CM . . . G 7 122.862 166.5 143.321 1 20 ? C4 6CM 801 D 1 
HETATM 9 C C5 6CM . . . G 7 124.131 166.494 143.713 1 20 ? C5 6CM 801 D 1 
HETATM 10 C C6 6CM . . . G 7 124.569 167.415 144.825 1 20 ? C6 6CM 801 D 1 
HETATM 11 C C7 6CM . . . G 7 123.638 168.619 144.891 1 20 ? C7 6CM 801 D 1 
HETATM 12 C C8 6CM . . . G 7 124.24 169.722 145.753 1 20 ? C8 6CM 801 D 1 
HETATM 13 C C9 6CM . . . G 7 123.193 170.351 146.66 1 20 ? C9 6CM 801 D 1 
HETATM 14 C C10 6CM . . . G 7 123.686 171.68 147.215 1 20 ? C10 6CM 801 D 1 
HETATM 15 C C11 6CM . . . G 7 124.016 171.572 148.697 1 20 ? C11 6CM 801 D 1 
HETATM 16 C C12 6CM . . . G 7 125.034 172.627 149.108 1 20 ? C12 6CM 801 D 1 
HETATM 17 C C13 6CM . . . G 7 124.41 174.016 149.139 1 20 ? C13 6CM 801 D 1 
HETATM 18 C C14 6CM . . . G 7 125.153 174.934 150.103 1 20 ? C14 6CM 801 D 1 
HETATM 19 C C15 6CM . . . G 7 126.236 175.73 149.385 1 20 ? C15 6CM 801 D 1 
HETATM 20 C C16 6CM . . . G 7 126.524 177.033 150.118 1 20 ? C16 6CM 801 D 1 
HETATM 21 C C17 6CM . . . G 7 125.273 177.549 150.812 1 20 ? C17 6CM 801 D 1 
HETATM 22 C C18 6CM . . . G 7 125.579 178.776 151.64 1 20 ? C18 6CM 801 D 1 
HETATM 23 O O3 6CM . . . G 7 121.354 164.752 142.681 1 20 ? O3 6CM 801 D 1 
HETATM 24 C C20 6CM . . . G 7 124.687 168.462 140.497 1 20 ? C20 6CM 801 D 1 
HETATM 25 C C21 6CM . . . G 7 125.046 169.854 139.994 1 20 ? C21 6CM 801 D 1 
HETATM 26 C C22 6CM . . . G 7 126.174 170.451 140.829 1 20 ? C22 6CM 801 D 1 
HETATM 27 C C23 6CM . . . G 7 125.635 171.451 141.844 1 20 ? C23 6CM 801 D 1 
HETATM 28 C C24 6CM . . . G 7 126.634 171.713 142.948 1 20 ? C24 6CM 801 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#