data_7YIY
#
_model_server_result.job_id            zylFGtd61-hsRCK8Py0lcw 
_model_server_result.datetime_utc      '2024-12-23 01:19:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yiy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    7YIY 
#
_exptl.entry_id    7YIY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              650.113 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YIY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C42 H83 N O3' 
_chem_comp.formula_weight    650.113 
_chem_comp.id                Z1T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 Z1T sing 400 n n 
N1 C17 Z1T sing 401 n n 
N1 C19 Z1T sing 402 n n 
O1 C16 Z1T sing 403 n n 
C2 C3 Z1T sing 404 n n 
O2 C18 Z1T sing 405 n n 
C3 C4 Z1T sing 406 n n 
C4 C5 Z1T sing 407 n n 
C5 C6 Z1T sing 408 n n 
C6 C7 Z1T sing 409 n n 
C7 C8 Z1T sing 410 n n 
C8 C9 Z1T sing 411 n n 
C9 C10 Z1T sing 412 n n 
C10 C11 Z1T sing 413 n n 
C11 C12 Z1T sing 414 n n 
C12 C13 Z1T sing 415 n n 
C13 C14 Z1T sing 416 n n 
C14 C15 Z1T doub 417 e n 
C15 C16 Z1T sing 418 n n 
C16 C17 Z1T sing 419 n n 
C17 C18 Z1T sing 420 n n 
O3 C19 Z1T doub 421 n n 
C19 C20 Z1T sing 422 n n 
C20 C21 Z1T sing 423 n n 
C21 C22 Z1T sing 424 n n 
C22 C23 Z1T sing 425 n n 
C23 C24 Z1T sing 426 n n 
C24 C25 Z1T sing 427 n n 
C25 C26 Z1T sing 428 n n 
C26 C27 Z1T sing 429 n n 
C27 C28 Z1T sing 430 n n 
C28 C29 Z1T sing 431 n n 
C29 C30 Z1T sing 432 n n 
C30 C31 Z1T sing 433 n n 
C31 C32 Z1T sing 434 n n 
C32 C33 Z1T sing 435 n n 
C33 C34 Z1T sing 436 n n 
C34 C35 Z1T sing 437 n n 
C35 C36 Z1T sing 438 n n 
C36 C37 Z1T sing 439 n n 
C37 C38 Z1T sing 440 n n 
C38 C39 Z1T sing 441 n n 
C39 C40 Z1T sing 442 n n 
C40 C41 Z1T sing 443 n n 
C41 C42 Z1T sing 444 n n 
C1 H11 Z1T sing 445 n n 
C1 H12 Z1T sing 446 n n 
C1 H13 Z1T sing 447 n n 
N1 H11N Z1T sing 448 n n 
O1 H1O Z1T sing 449 n n 
C2 H21 Z1T sing 450 n n 
C2 H22 Z1T sing 451 n n 
C3 H31 Z1T sing 452 n n 
C3 H32 Z1T sing 453 n n 
C4 H41 Z1T sing 454 n n 
C4 H42 Z1T sing 455 n n 
C5 H51 Z1T sing 456 n n 
C5 H52 Z1T sing 457 n n 
C6 H61 Z1T sing 458 n n 
C6 H62 Z1T sing 459 n n 
C7 H71 Z1T sing 460 n n 
C7 H72 Z1T sing 461 n n 
C8 H81 Z1T sing 462 n n 
C8 H82 Z1T sing 463 n n 
C9 H91 Z1T sing 464 n n 
C9 H92 Z1T sing 465 n n 
C10 H101 Z1T sing 466 n n 
C10 H102 Z1T sing 467 n n 
C11 H111 Z1T sing 468 n n 
C11 H112 Z1T sing 469 n n 
C12 H121 Z1T sing 470 n n 
C12 H122 Z1T sing 471 n n 
C13 H131 Z1T sing 472 n n 
C13 H132 Z1T sing 473 n n 
C14 H141 Z1T sing 474 n n 
C15 H151 Z1T sing 475 n n 
C16 H161 Z1T sing 476 n n 
C17 H171 Z1T sing 477 n n 
C18 H181 Z1T sing 478 n n 
C18 H182 Z1T sing 479 n n 
C20 H201 Z1T sing 480 n n 
C20 H202 Z1T sing 481 n n 
C21 H211 Z1T sing 482 n n 
C21 H212 Z1T sing 483 n n 
C22 H221 Z1T sing 484 n n 
C22 H222 Z1T sing 485 n n 
C23 H231 Z1T sing 486 n n 
C23 H232 Z1T sing 487 n n 
C24 H241 Z1T sing 488 n n 
C24 H242 Z1T sing 489 n n 
C25 H251 Z1T sing 490 n n 
C25 H252 Z1T sing 491 n n 
C26 H261 Z1T sing 492 n n 
C26 H262 Z1T sing 493 n n 
C27 H271 Z1T sing 494 n n 
C27 H272 Z1T sing 495 n n 
C28 H281 Z1T sing 496 n n 
C28 H282 Z1T sing 497 n n 
C29 H291 Z1T sing 498 n n 
C29 H292 Z1T sing 499 n n 
C30 H301 Z1T sing 500 n n 
C31 H311 Z1T sing 501 n n 
C32 H321 Z1T sing 502 n n 
C32 H322 Z1T sing 503 n n 
C33 H331 Z1T sing 504 n n 
C34 H341 Z1T sing 505 n n 
C35 H351 Z1T sing 506 n n 
C35 H352 Z1T sing 507 n n 
C36 H361 Z1T sing 508 n n 
C36 H362 Z1T sing 509 n n 
C37 H371 Z1T sing 510 n n 
C38 H381 Z1T sing 511 n n 
C39 H391 Z1T sing 512 n n 
C39 H392 Z1T sing 513 n n 
C42 H421 Z1T sing 514 n n 
C42 H422 Z1T sing 515 n n 
C42 H423 Z1T sing 516 n n 
C30 H302 Z1T sing 517 n n 
C31 H312 Z1T sing 518 n n 
C33 H332 Z1T sing 519 n n 
C34 H342 Z1T sing 520 n n 
C37 H372 Z1T sing 521 n n 
C38 H382 Z1T sing 522 n n 
C40 H401 Z1T sing 523 n n 
C40 H402 Z1T sing 524 n n 
C41 H411 Z1T sing 525 n n 
C41 H412 Z1T sing 526 n n 
O2 H2O Z1T sing 527 n n 
#
_atom_sites.entry_id                     7YIY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 PLP B 1 601 601 PLP PLP . 
G 7 Z1T D 1 201 1 Z1T DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Z1T . . . G 7 126.512 178.242 152.121 1 20 ? C1 Z1T 201 D 1 
HETATM 2 N N1 Z1T . . . G 7 124.02 166.803 140.514 1 20 ? N1 Z1T 201 D 1 
HETATM 3 O O1 Z1T . . . G 7 123.404 165.067 143.669 1 20 ? O1 Z1T 201 D 1 
HETATM 4 C C2 Z1T . . . G 7 127.786 177.717 151.456 1 20 ? C2 Z1T 201 D 1 
HETATM 5 O O2 Z1T . . . G 7 122.934 164.125 141.119 1 20 ? O2 Z1T 201 D 1 
HETATM 6 C C3 Z1T . . . G 7 127.431 177.058 150.125 1 20 ? C3 Z1T 201 D 1 
HETATM 7 C C4 Z1T . . . G 7 128.398 175.907 149.847 1 20 ? C4 Z1T 201 D 1 
HETATM 8 C C5 Z1T . . . G 7 127.978 174.67 150.652 1 20 ? C5 Z1T 201 D 1 
HETATM 9 C C6 Z1T . . . G 7 126.629 174.148 150.142 1 20 ? C6 Z1T 201 D 1 
HETATM 10 C C7 Z1T . . . G 7 126.682 172.626 150.004 1 20 ? C7 Z1T 201 D 1 
HETATM 11 C C8 Z1T . . . G 7 125.689 172.171 148.933 1 20 ? C8 Z1T 201 D 1 
HETATM 12 C C9 Z1T . . . G 7 126.331 171.075 148.085 1 20 ? C9 Z1T 201 D 1 
HETATM 13 C C10 Z1T . . . G 7 125.521 170.867 146.81 1 20 ? C10 Z1T 201 D 1 
HETATM 14 C C11 Z1T . . . G 7 125.256 169.376 146.63 1 20 ? C11 Z1T 201 D 1 
HETATM 15 C C12 Z1T . . . G 7 125.56 168.961 145.19 1 20 ? C12 Z1T 201 D 1 
HETATM 16 C C13 Z1T . . . G 7 126.588 167.826 145.189 1 20 ? C13 Z1T 201 D 1 
HETATM 17 C C14 Z1T . . . G 7 126.02 166.648 144.403 1 20 ? C14 Z1T 201 D 1 
HETATM 18 C C15 Z1T . . . G 7 124.796 167.009 143.571 1 20 ? C15 Z1T 201 D 1 
HETATM 19 C C16 Z1T . . . G 7 124.177 165.869 142.778 1 20 ? C16 Z1T 201 D 1 
HETATM 20 C C17 Z1T . . . G 7 123.251 166.44 141.707 1 20 ? C17 Z1T 201 D 1 
HETATM 21 C C18 Z1T . . . G 7 122.246 165.362 141.316 1 20 ? C18 Z1T 201 D 1 
HETATM 22 O O3 Z1T . . . G 7 125.197 168.302 139.31 1 20 ? O3 Z1T 201 D 1 
HETATM 23 C C19 Z1T . . . G 7 124.564 168.006 140.319 1 20 ? C19 Z1T 201 D 1 
HETATM 24 C C20 Z1T . . . G 7 124.358 169.006 141.447 1 20 ? C20 Z1T 201 D 1 
HETATM 25 C C21 Z1T . . . G 7 124.395 170.43 140.884 1 20 ? C21 Z1T 201 D 1 
HETATM 26 C C22 Z1T . . . G 7 125.777 170.745 140.297 1 20 ? C22 Z1T 201 D 1 
HETATM 27 C C23 Z1T . . . G 7 126.814 169.791 140.882 1 20 ? C23 Z1T 201 D 1 
HETATM 28 C C24 Z1T . . . G 7 127.933 170.591 141.545 1 20 ? C24 Z1T 201 D 1 
HETATM 29 C C25 Z1T . . . G 7 127.432 171.979 141.936 1 20 ? C25 Z1T 201 D 1 
HETATM 30 C C26 Z1T . . . G 7 127.583 172.163 143.44 1 20 ? C26 Z1T 201 D 1 
HETATM 31 C C27 Z1T . . . G 7 129 171.771 143.842 1 20 ? C27 Z1T 201 D 1 
HETATM 32 C C28 Z1T . . . G 7 129.471 172.674 144.977 1 20 ? C28 Z1T 201 D 1 
HETATM 33 C C29 Z1T . . . G 7 130.885 172.266 145.381 1 20 ? C29 Z1T 201 D 1 
HETATM 34 C C30 Z1T . . . G 7 131.035 172.36 146.899 1 20 ? C30 Z1T 201 D 1 
HETATM 35 C C31 Z1T . . . G 7 130.079 173.423 147.433 1 20 ? C31 Z1T 201 D 1 
HETATM 36 C C32 Z1T . . . G 7 130.577 173.907 148.79 1 20 ? C32 Z1T 201 D 1 
HETATM 37 C C33 Z1T . . . G 7 131.613 175.008 148.585 1 20 ? C33 Z1T 201 D 1 
HETATM 38 C C34 Z1T . . . G 7 131.679 175.881 149.833 1 20 ? C34 Z1T 201 D 1 
HETATM 39 C C35 Z1T . . . G 7 133.139 176.196 150.139 1 20 ? C35 Z1T 201 D 1 
HETATM 40 C C36 Z1T . . . G 7 133.22 177.171 151.311 1 20 ? C36 Z1T 201 D 1 
HETATM 41 C C37 Z1T . . . G 7 134.674 177.301 151.756 1 20 ? C37 Z1T 201 D 1 
HETATM 42 C C38 Z1T . . . G 7 134.922 178.714 152.281 1 20 ? C38 Z1T 201 D 1 
HETATM 43 C C39 Z1T . . . G 7 134.681 179.721 151.156 1 20 ? C39 Z1T 201 D 1 
HETATM 44 C C40 Z1T . . . G 7 135.527 180.97 151.393 1 20 ? C40 Z1T 201 D 1 
HETATM 45 C C41 Z1T . . . G 7 137.005 180.633 151.192 1 20 ? C41 Z1T 201 D 1 
HETATM 46 C C42 Z1T . . . G 7 137.816 181.928 151.101 1 20 ? C42 Z1T 201 D 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           46 
#