data_7YIZ # _model_server_result.job_id i9Vu7S0HpwGy08KEa9fGZQ _model_server_result.datetime_utc '2024-11-28 14:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7YIZ # _exptl.entry_id 7YIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.357 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YIZ _cell.length_a 63.335 _cell.length_b 112.056 _cell.length_c 157.792 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 141 B CYS 141 1_555 B SG CYS 197 B CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf6 C SG CYS 134 C CYS 134 1_555 C SG CYS 194 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 141 D CYS 141 1_555 D SG CYS 197 D CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C13 H28 O7' _chem_comp.formula_weight 296.357 _chem_comp.id P15 _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O6 P15 sing 237 n n C13 H131 P15 sing 238 n n C13 H132 P15 sing 239 n n C13 H133 P15 sing 240 n n O6 C12 P15 sing 241 n n C12 C11 P15 sing 242 n n C12 H121 P15 sing 243 n n C12 H122 P15 sing 244 n n C11 O5 P15 sing 245 n n C11 H111 P15 sing 246 n n C11 H112 P15 sing 247 n n O5 C10 P15 sing 248 n n C10 C9 P15 sing 249 n n C10 H101 P15 sing 250 n n C10 H102 P15 sing 251 n n C9 O4 P15 sing 252 n n C9 H91 P15 sing 253 n n C9 H92 P15 sing 254 n n O4 C8 P15 sing 255 n n C8 C7 P15 sing 256 n n C8 H81 P15 sing 257 n n C8 H82 P15 sing 258 n n C7 O3 P15 sing 259 n n C7 H71 P15 sing 260 n n C7 H72 P15 sing 261 n n O3 C6 P15 sing 262 n n C6 C5 P15 sing 263 n n C6 H61 P15 sing 264 n n C6 H62 P15 sing 265 n n C5 O2 P15 sing 266 n n C5 H51 P15 sing 267 n n C5 H52 P15 sing 268 n n O2 C4 P15 sing 269 n n C4 C3 P15 sing 270 n n C4 H41 P15 sing 271 n n C4 H42 P15 sing 272 n n C3 O1 P15 sing 273 n n C3 H31 P15 sing 274 n n C3 H32 P15 sing 275 n n O1 C2 P15 sing 276 n n C2 C1 P15 sing 277 n n C2 H21 P15 sing 278 n n C2 H22 P15 sing 279 n n C1 OXT P15 sing 280 n n C1 H11 P15 sing 281 n n C1 H12 P15 sing 282 n n OXT HOXT P15 sing 283 n n # _atom_sites.entry_id 7YIZ _atom_sites.fract_transf_matrix[1][1] 0.015789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 P15 B 1 301 301 P15 DRG . F 3 P15 D 1 301 301 P15 DRG . G 4 HOH A 1 301 74 HOH HOH . G 4 HOH A 2 302 37 HOH HOH . G 4 HOH A 3 303 76 HOH HOH . G 4 HOH A 4 304 18 HOH HOH . G 4 HOH A 5 305 68 HOH HOH . G 4 HOH A 6 306 83 HOH HOH . G 4 HOH A 7 307 46 HOH HOH . G 4 HOH A 8 308 47 HOH HOH . G 4 HOH A 9 309 7 HOH HOH . G 4 HOH A 10 310 9 HOH HOH . G 4 HOH A 11 311 90 HOH HOH . G 4 HOH A 12 312 13 HOH HOH . G 4 HOH A 13 313 65 HOH HOH . G 4 HOH A 14 314 19 HOH HOH . G 4 HOH A 15 315 69 HOH HOH . G 4 HOH A 16 316 58 HOH HOH . G 4 HOH A 17 317 40 HOH HOH . G 4 HOH A 18 318 92 HOH HOH . G 4 HOH A 19 319 84 HOH HOH . G 4 HOH A 20 320 2 HOH HOH . G 4 HOH A 21 321 64 HOH HOH . G 4 HOH A 22 322 93 HOH HOH . G 4 HOH A 23 323 23 HOH HOH . G 4 HOH A 24 324 48 HOH HOH . G 4 HOH A 25 325 95 HOH HOH . G 4 HOH A 26 326 44 HOH HOH . G 4 HOH A 27 327 91 HOH HOH . G 4 HOH A 28 328 21 HOH HOH . G 4 HOH A 29 329 89 HOH HOH . H 4 HOH B 1 401 20 HOH HOH . H 4 HOH B 2 402 54 HOH HOH . H 4 HOH B 3 403 71 HOH HOH . H 4 HOH B 4 404 53 HOH HOH . H 4 HOH B 5 405 29 HOH HOH . H 4 HOH B 6 406 75 HOH HOH . H 4 HOH B 7 407 39 HOH HOH . H 4 HOH B 8 408 11 HOH HOH . H 4 HOH B 9 409 56 HOH HOH . H 4 HOH B 10 410 41 HOH HOH . H 4 HOH B 11 411 42 HOH HOH . H 4 HOH B 12 412 63 HOH HOH . H 4 HOH B 13 413 82 HOH HOH . H 4 HOH B 14 414 101 HOH HOH . H 4 HOH B 15 415 97 HOH HOH . H 4 HOH B 16 416 3 HOH HOH . H 4 HOH B 17 417 61 HOH HOH . H 4 HOH B 18 418 70 HOH HOH . H 4 HOH B 19 419 51 HOH HOH . H 4 HOH B 20 420 50 HOH HOH . H 4 HOH B 21 421 31 HOH HOH . H 4 HOH B 22 422 27 HOH HOH . H 4 HOH B 23 423 81 HOH HOH . H 4 HOH B 24 424 45 HOH HOH . H 4 HOH B 25 425 34 HOH HOH . H 4 HOH B 26 426 59 HOH HOH . H 4 HOH B 27 427 88 HOH HOH . H 4 HOH B 28 428 96 HOH HOH . H 4 HOH B 29 429 98 HOH HOH . H 4 HOH B 30 430 94 HOH HOH . I 4 HOH C 1 301 52 HOH HOH . I 4 HOH C 2 302 80 HOH HOH . I 4 HOH C 3 303 15 HOH HOH . I 4 HOH C 4 304 25 HOH HOH . I 4 HOH C 5 305 22 HOH HOH . I 4 HOH C 6 306 60 HOH HOH . I 4 HOH C 7 307 57 HOH HOH . I 4 HOH C 8 308 78 HOH HOH . I 4 HOH C 9 309 110 HOH HOH . I 4 HOH C 10 310 86 HOH HOH . I 4 HOH C 11 311 102 HOH HOH . I 4 HOH C 12 312 111 HOH HOH . I 4 HOH C 13 313 104 HOH HOH . I 4 HOH C 14 314 105 HOH HOH . J 4 HOH D 1 401 5 HOH HOH . J 4 HOH D 2 402 49 HOH HOH . J 4 HOH D 3 403 24 HOH HOH . J 4 HOH D 4 404 32 HOH HOH . J 4 HOH D 5 405 55 HOH HOH . J 4 HOH D 6 406 17 HOH HOH . J 4 HOH D 7 407 30 HOH HOH . J 4 HOH D 8 408 16 HOH HOH . J 4 HOH D 9 409 10 HOH HOH . J 4 HOH D 10 410 33 HOH HOH . J 4 HOH D 11 411 79 HOH HOH . J 4 HOH D 12 412 14 HOH HOH . J 4 HOH D 13 413 38 HOH HOH . J 4 HOH D 14 414 67 HOH HOH . J 4 HOH D 15 415 72 HOH HOH . J 4 HOH D 16 416 77 HOH HOH . J 4 HOH D 17 417 26 HOH HOH . J 4 HOH D 18 418 66 HOH HOH . J 4 HOH D 19 419 28 HOH HOH . J 4 HOH D 20 420 35 HOH HOH . J 4 HOH D 21 421 36 HOH HOH . J 4 HOH D 22 422 43 HOH HOH . J 4 HOH D 23 423 87 HOH HOH . J 4 HOH D 24 424 107 HOH HOH . J 4 HOH D 25 425 103 HOH HOH . J 4 HOH D 26 426 106 HOH HOH . J 4 HOH D 27 427 100 HOH HOH . J 4 HOH D 28 428 108 HOH HOH . J 4 HOH D 29 429 99 HOH HOH . J 4 HOH D 30 430 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 P15 . . . F 3 24.232 16.053 20.229 1 51.65 ? C13 P15 301 D 1 HETATM 2 O O6 P15 . . . F 3 24.729 17.388 20.398 1 54.83 ? O6 P15 301 D 1 HETATM 3 C C12 P15 . . . F 3 26.104 17.356 20.694 1 51.23 ? C12 P15 301 D 1 HETATM 4 C C11 P15 . . . F 3 26.552 18.781 20.513 1 52.92 ? C11 P15 301 D 1 HETATM 5 O O5 P15 . . . F 3 26.721 19.365 21.841 1 53.06 ? O5 P15 301 D 1 HETATM 6 C C10 P15 . . . F 3 25.5 19.888 22.303 1 52.87 ? C10 P15 301 D 1 HETATM 7 C C9 P15 . . . F 3 25.782 20.471 23.661 1 53.17 ? C9 P15 301 D 1 HETATM 8 O O4 P15 . . . F 3 26.305 21.803 23.474 1 53 ? O4 P15 301 D 1 HETATM 9 C C8 P15 . . . F 3 25.255 22.772 23.302 1 49.45 ? C8 P15 301 D 1 HETATM 10 C C7 P15 . . . F 3 25.899 24.145 23.312 1 49.31 ? C7 P15 301 D 1 HETATM 11 O O3 P15 . . . F 3 26.603 24.294 22.049 1 48.63 ? O3 P15 301 D 1 HETATM 12 C C6 P15 . . . F 3 26.029 25.265 21.173 1 50.83 ? C6 P15 301 D 1 HETATM 13 C C5 P15 . . . F 3 27.124 26.203 20.688 1 50.91 ? C5 P15 301 D 1 HETATM 14 O O2 P15 . . . F 3 27.597 25.763 19.378 1 51.37 ? O2 P15 301 D 1 HETATM 15 C C4 P15 . . . F 3 26.813 25.754 18.16 1 50.64 ? C4 P15 301 D 1 HETATM 16 C C3 P15 . . . F 3 25.704 26.8 18.204 1 53.61 ? C3 P15 301 D 1 HETATM 17 O O1 P15 . . . F 3 24.757 26.529 17.128 1 49.89 ? O1 P15 301 D 1 HETATM 18 C C2 P15 . . . F 3 23.819 27.615 17.042 1 48.86 ? C2 P15 301 D 1 HETATM 19 C C1 P15 . . . F 3 22.439 27.111 17.432 1 49.82 ? C1 P15 301 D 1 HETATM 20 O OXT P15 . . . F 3 22.027 27.687 18.695 1 52.96 ? OXT P15 301 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 20 #