data_7YJC
#
_model_server_result.job_id            d_CIkmfbnENuTB9YjvHzfQ 
_model_server_result.datetime_utc      '2025-07-31 04:47:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yjc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
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_entry.id    7YJC 
#
_exptl.entry_id    7YJC 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              214.175 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.01 
_cell.angle_gamma         90 
_cell.entry_id            7YJC 
_cell.length_a            44.61 
_cell.length_b            71.2 
_cell.length_c            78.719 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YJC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             280 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              437 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             385 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              542 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.986 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N2 O5' 
_chem_comp.formula_weight    214.175 
_chem_comp.id                IVO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C3 IVO sing 173 n n 
O12 C4 IVO sing 174 n n 
C3 C4 IVO sing 175 n n 
C3 C2 IVO sing 176 n n 
C4 C5 IVO sing 177 n n 
O13 C2 IVO sing 178 n n 
C2 C1 IVO sing 179 n n 
C5 N7 IVO doub 180 n y 
C5 N6 IVO sing 181 n y 
N7 C8 IVO sing 182 n y 
C1 N6 IVO sing 183 n n 
C1 C10 IVO sing 184 n n 
N6 C9 IVO sing 185 n y 
O15 C10 IVO doub 186 n n 
C10 O14 IVO sing 187 n n 
C8 C9 IVO doub 188 n y 
O14 H1 IVO sing 189 n n 
C1 H2 IVO sing 190 n n 
C9 H3 IVO sing 191 n n 
C8 H4 IVO sing 192 n n 
C4 H5 IVO sing 193 n n 
O12 H6 IVO sing 194 n n 
C3 H7 IVO sing 195 n n 
O11 H8 IVO sing 196 n n 
C2 H9 IVO sing 197 n n 
O13 H10 IVO sing 198 n n 
#
_atom_sites.entry_id                     7YJC 
_atom_sites.fract_transf_matrix[1][1]    0.022416 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014045 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012829 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 IVO A 1 601 1543 IVO inh . 
D 4 HOH A 1 701 1660 HOH HOH . 
D 4 HOH A 2 702 1655 HOH HOH . 
D 4 HOH A 3 703 1668 HOH HOH . 
D 4 HOH A 4 704 1684 HOH HOH . 
D 4 HOH A 5 705 1676 HOH HOH . 
D 4 HOH A 6 706 1670 HOH HOH . 
D 4 HOH A 7 707 1677 HOH HOH . 
D 4 HOH A 8 708 1661 HOH HOH . 
D 4 HOH A 9 709 1647 HOH HOH . 
D 4 HOH A 10 710 1651 HOH HOH . 
D 4 HOH A 11 711 1669 HOH HOH . 
D 4 HOH A 12 712 1690 HOH HOH . 
D 4 HOH A 13 713 1667 HOH HOH . 
D 4 HOH A 14 714 1671 HOH HOH . 
D 4 HOH A 15 715 1656 HOH HOH . 
D 4 HOH A 16 716 1687 HOH HOH . 
D 4 HOH A 17 717 1689 HOH HOH . 
D 4 HOH A 18 718 1679 HOH HOH . 
D 4 HOH A 19 719 1643 HOH HOH . 
D 4 HOH A 20 720 1652 HOH HOH . 
D 4 HOH A 21 721 1665 HOH HOH . 
D 4 HOH A 22 722 1682 HOH HOH . 
D 4 HOH A 23 723 1645 HOH HOH . 
D 4 HOH A 24 724 1666 HOH HOH . 
D 4 HOH A 25 725 1683 HOH HOH . 
D 4 HOH A 26 726 1678 HOH HOH . 
D 4 HOH A 27 727 1674 HOH HOH . 
D 4 HOH A 28 728 1658 HOH HOH . 
D 4 HOH A 29 729 1664 HOH HOH . 
D 4 HOH A 30 730 1686 HOH HOH . 
D 4 HOH A 31 731 1648 HOH HOH . 
D 4 HOH A 32 732 1675 HOH HOH . 
D 4 HOH A 33 733 1653 HOH HOH . 
D 4 HOH A 34 734 1662 HOH HOH . 
D 4 HOH A 35 735 1644 HOH HOH . 
D 4 HOH A 36 736 1657 HOH HOH . 
D 4 HOH A 37 737 1688 HOH HOH . 
D 4 HOH A 38 738 1649 HOH HOH . 
D 4 HOH A 39 739 1685 HOH HOH . 
D 4 HOH A 40 740 1654 HOH HOH . 
D 4 HOH A 41 741 1659 HOH HOH . 
D 4 HOH A 42 742 1680 HOH HOH . 
D 4 HOH A 43 743 1673 HOH HOH . 
D 4 HOH A 44 744 1650 HOH HOH . 
D 4 HOH A 45 745 1672 HOH HOH . 
D 4 HOH A 46 746 1663 HOH HOH . 
D 4 HOH A 47 747 1681 HOH HOH . 
D 4 HOH A 48 748 1646 HOH HOH . 
E 4 HOH B 1 201 211 HOH HOH . 
E 4 HOH B 2 202 213 HOH HOH . 
E 4 HOH B 3 203 212 HOH HOH . 
E 4 HOH B 4 204 209 HOH HOH . 
E 4 HOH B 5 205 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O15 IVO . . . C 3 -16.61 5.851 20.477 1 39.06 ? O15 IVO 601 A 1 
HETATM 2 C C10 IVO . . . C 3 -15.367 5.785 20.701 1 37.64 ? C10 IVO 601 A 1 
HETATM 3 O O14 IVO . . . C 3 -14.76 6.391 21.643 1 32.97 ? O14 IVO 601 A 1 
HETATM 4 C C1 IVO . . . C 3 -14.605 4.897 19.774 1 34.96 ? C1 IVO 601 A 1 
HETATM 5 N N6 IVO . . . C 3 -15.048 3.49 19.946 1 31.67 ? N6 IVO 601 A 1 
HETATM 6 C C9 IVO . . . C 3 -15.372 2.915 21.107 1 28.6 ? C9 IVO 601 A 1 
HETATM 7 C C8 IVO . . . C 3 -15.725 1.622 20.796 1 29.54 ? C8 IVO 601 A 1 
HETATM 8 N N7 IVO . . . C 3 -15.598 1.445 19.46 1 28.6 ? N7 IVO 601 A 1 
HETATM 9 C C5 IVO . . . C 3 -15.196 2.617 18.939 1 30.41 ? C5 IVO 601 A 1 
HETATM 10 C C4 IVO . . . C 3 -14.948 2.914 17.496 1 31.39 ? C4 IVO 601 A 1 
HETATM 11 O O12 IVO . . . C 3 -14.227 1.844 16.839 1 28.64 ? O12 IVO 601 A 1 
HETATM 12 C C3 IVO . . . C 3 -14.218 4.275 17.415 1 32.93 ? C3 IVO 601 A 1 
HETATM 13 O O11 IVO . . . C 3 -14.188 4.723 16.059 1 34.79 ? O11 IVO 601 A 1 
HETATM 14 C C2 IVO . . . C 3 -14.877 5.31 18.344 1 33.18 ? C2 IVO 601 A 1 
HETATM 15 O O13 IVO . . . C 3 -14.423 6.66 18.193 1 33.91 ? O13 IVO 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#