data_7YJS # _model_server_result.job_id pBC3GLP1TEza4vWHCK0BOg _model_server_result.datetime_utc '2024-11-14 04:49:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yjs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7YJS # _exptl.entry_id 7YJS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.967 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GOLD ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.48 _cell.angle_gamma 90 _cell.entry_id 7YJS _cell.length_a 47.103 _cell.length_b 84.737 _cell.length_c 81.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 281 1_555 A SG CYS 86 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 151 A CYS 356 1_555 A SG CYS 159 A CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 209 A CYS 414 1_555 A SG CYS 217 A CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 B SG CYS 76 B CYS 281 1_555 B SG CYS 86 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 151 B CYS 356 1_555 B SG CYS 159 B CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 B SG CYS 209 B CYS 414 1_555 B SG CYS 217 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A C SER 79 A SER 284 1_555 A N TPO 80 A TPO 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C TPO 80 A TPO 285 1_555 A N ALA 81 A ALA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C SER 79 B SER 284 1_555 B N TPO 80 B TPO 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C TPO 80 B TPO 285 1_555 B N ALA 81 B ALA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE1 GLU 41 A GLU 246 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc2 A OE2 GLU 41 A GLU 246 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 A OG1 TPO 80 A TPO 285 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A O3P TPO 80 A TPO 285 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc5 A OD2 ASP 260 A ASP 465 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 A NE2 HIS 261 A HIS 466 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc7 B OE1 GLU 41 B GLU 246 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc8 B OE2 GLU 41 B GLU 246 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc9 B OG1 TPO 80 B TPO 285 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc10 B O1P TPO 80 B TPO 285 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc11 B OD2 ASP 260 B ASP 465 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc12 B NE2 HIS 261 B HIS 466 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? # _chem_comp.formula 'Au 1' _chem_comp.formula_weight 196.967 _chem_comp.id AU _chem_comp.mon_nstd_flag . _chem_comp.name 'GOLD ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YJS _atom_sites.fract_transf_matrix[1][1] 0.02123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AU A 1 601 1 AU AU . D 2 AU B 1 601 3 AU AU . E 3 HOH A 1 701 3 HOH HOH . E 3 HOH A 2 702 4 HOH HOH . E 3 HOH A 3 703 6 HOH HOH . E 3 HOH A 4 704 7 HOH HOH . E 3 HOH A 5 705 12 HOH HOH . E 3 HOH A 6 706 1 HOH HOH . E 3 HOH A 7 707 22 HOH HOH . E 3 HOH A 8 708 17 HOH HOH . E 3 HOH A 9 709 14 HOH HOH . E 3 HOH A 10 710 13 HOH HOH . E 3 HOH A 11 711 15 HOH HOH . E 3 HOH A 12 712 2 HOH HOH . E 3 HOH A 13 713 19 HOH HOH . E 3 HOH A 14 714 11 HOH HOH . E 3 HOH A 15 715 23 HOH HOH . E 3 HOH A 16 716 20 HOH HOH . E 3 HOH A 17 717 5 HOH HOH . E 3 HOH A 18 718 24 HOH HOH . E 3 HOH A 19 719 16 HOH HOH . F 3 HOH B 1 701 18 HOH HOH . F 3 HOH B 2 702 21 HOH HOH . F 3 HOH B 3 703 8 HOH HOH . F 3 HOH B 4 704 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AU _atom_site.label_atom_id AU _atom_site.label_comp_id AU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.303 _atom_site.Cartn_y 2.3 _atom_site.Cartn_z 8.97 _atom_site.occupancy 0.35 _atom_site.B_iso_or_equiv 15.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AU _atom_site.auth_comp_id AU _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #