data_7YJT # _model_server_result.job_id 3tH4cmGe4r4lQfsDgNkNcw _model_server_result.datetime_utc '2024-11-14 03:47:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7YJT # _exptl.entry_id 7YJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.967 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'GOLD ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.6 _cell.angle_gamma 90 _cell.entry_id 7YJT _cell.length_a 47.23 _cell.length_b 84.614 _cell.length_c 81.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 281 1_555 A SG CYS 86 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 151 A CYS 356 1_555 A SG CYS 159 A CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 209 A CYS 414 1_555 A SG CYS 217 A CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 B SG CYS 76 B CYS 281 1_555 B SG CYS 86 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 B SG CYS 151 B CYS 356 1_555 B SG CYS 159 B CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 B SG CYS 209 B CYS 414 1_555 B SG CYS 217 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A C SER 79 A SER 284 1_555 A N TPO 80 A TPO 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 80 A TPO 285 1_555 A N ALA 81 A ALA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C SER 79 B SER 284 1_555 B N TPO 80 B TPO 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C TPO 80 B TPO 285 1_555 B N ALA 81 B ALA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A OE1 GLU 41 A GLU 246 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A OE2 GLU 41 A GLU 246 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A OG1 TPO 80 A TPO 285 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 A O3P TPO 80 A TPO 285 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc5 A OD2 ASP 260 A ASP 465 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 A NE2 HIS 261 A HIS 466 1_555 C AU AU . A AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 B OE1 GLU 41 B GLU 246 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc8 B OE2 GLU 41 B GLU 246 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 B OG1 TPO 80 B TPO 285 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc10 B O3P TPO 80 B TPO 285 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc11 B OD2 ASP 260 B ASP 465 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc12 B NE2 HIS 261 B HIS 466 1_555 D AU AU . B AU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'Au 1' _chem_comp.formula_weight 196.967 _chem_comp.id AU _chem_comp.mon_nstd_flag . _chem_comp.name 'GOLD ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YJT _atom_sites.fract_transf_matrix[1][1] 0.021173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003202 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AU A 1 601 1 AU AU . D 2 AU B 1 601 2 AU AU . E 3 HOH A 1 701 108 HOH HOH . E 3 HOH A 2 702 41 HOH HOH . E 3 HOH A 3 703 116 HOH HOH . E 3 HOH A 4 704 82 HOH HOH . E 3 HOH A 5 705 29 HOH HOH . E 3 HOH A 6 706 3 HOH HOH . E 3 HOH A 7 707 106 HOH HOH . E 3 HOH A 8 708 70 HOH HOH . E 3 HOH A 9 709 7 HOH HOH . E 3 HOH A 10 710 56 HOH HOH . E 3 HOH A 11 711 43 HOH HOH . E 3 HOH A 12 712 5 HOH HOH . E 3 HOH A 13 713 48 HOH HOH . E 3 HOH A 14 714 97 HOH HOH . E 3 HOH A 15 715 95 HOH HOH . E 3 HOH A 16 716 13 HOH HOH . E 3 HOH A 17 717 109 HOH HOH . E 3 HOH A 18 718 71 HOH HOH . E 3 HOH A 19 719 38 HOH HOH . E 3 HOH A 20 720 17 HOH HOH . E 3 HOH A 21 721 68 HOH HOH . E 3 HOH A 22 722 21 HOH HOH . E 3 HOH A 23 723 81 HOH HOH . E 3 HOH A 24 724 20 HOH HOH . E 3 HOH A 25 725 26 HOH HOH . E 3 HOH A 26 726 22 HOH HOH . E 3 HOH A 27 727 101 HOH HOH . E 3 HOH A 28 728 65 HOH HOH . E 3 HOH A 29 729 117 HOH HOH . E 3 HOH A 30 730 10 HOH HOH . E 3 HOH A 31 731 121 HOH HOH . E 3 HOH A 32 732 24 HOH HOH . E 3 HOH A 33 733 87 HOH HOH . E 3 HOH A 34 734 58 HOH HOH . E 3 HOH A 35 735 94 HOH HOH . E 3 HOH A 36 736 118 HOH HOH . E 3 HOH A 37 737 27 HOH HOH . E 3 HOH A 38 738 1 HOH HOH . E 3 HOH A 39 739 89 HOH HOH . E 3 HOH A 40 740 25 HOH HOH . E 3 HOH A 41 741 42 HOH HOH . E 3 HOH A 42 742 34 HOH HOH . E 3 HOH A 43 743 31 HOH HOH . E 3 HOH A 44 744 18 HOH HOH . E 3 HOH A 45 745 9 HOH HOH . E 3 HOH A 46 746 54 HOH HOH . E 3 HOH A 47 747 93 HOH HOH . E 3 HOH A 48 748 44 HOH HOH . E 3 HOH A 49 749 14 HOH HOH . E 3 HOH A 50 750 6 HOH HOH . E 3 HOH A 51 751 86 HOH HOH . E 3 HOH A 52 752 19 HOH HOH . E 3 HOH A 53 753 35 HOH HOH . E 3 HOH A 54 754 84 HOH HOH . E 3 HOH A 55 755 64 HOH HOH . E 3 HOH A 56 756 72 HOH HOH . E 3 HOH A 57 757 85 HOH HOH . E 3 HOH A 58 758 62 HOH HOH . E 3 HOH A 59 759 32 HOH HOH . E 3 HOH A 60 760 46 HOH HOH . E 3 HOH A 61 761 37 HOH HOH . E 3 HOH A 62 762 28 HOH HOH . E 3 HOH A 63 763 60 HOH HOH . E 3 HOH A 64 764 115 HOH HOH . E 3 HOH A 65 765 12 HOH HOH . E 3 HOH A 66 766 49 HOH HOH . E 3 HOH A 67 767 30 HOH HOH . E 3 HOH A 68 768 100 HOH HOH . E 3 HOH A 69 769 98 HOH HOH . E 3 HOH A 70 770 104 HOH HOH . E 3 HOH A 71 771 102 HOH HOH . E 3 HOH A 72 772 91 HOH HOH . E 3 HOH A 73 773 39 HOH HOH . E 3 HOH A 74 774 105 HOH HOH . E 3 HOH A 75 775 78 HOH HOH . E 3 HOH A 76 776 83 HOH HOH . E 3 HOH A 77 777 79 HOH HOH . E 3 HOH A 78 778 114 HOH HOH . E 3 HOH A 79 779 80 HOH HOH . E 3 HOH A 80 780 51 HOH HOH . E 3 HOH A 81 781 107 HOH HOH . E 3 HOH A 82 782 119 HOH HOH . E 3 HOH A 83 783 57 HOH HOH . E 3 HOH A 84 784 4 HOH HOH . E 3 HOH A 85 785 103 HOH HOH . E 3 HOH A 86 786 15 HOH HOH . E 3 HOH A 87 787 16 HOH HOH . E 3 HOH A 88 788 112 HOH HOH . E 3 HOH A 89 789 55 HOH HOH . E 3 HOH A 90 790 99 HOH HOH . F 3 HOH B 1 701 66 HOH HOH . F 3 HOH B 2 702 52 HOH HOH . F 3 HOH B 3 703 76 HOH HOH . F 3 HOH B 4 704 69 HOH HOH . F 3 HOH B 5 705 67 HOH HOH . F 3 HOH B 6 706 90 HOH HOH . F 3 HOH B 7 707 53 HOH HOH . F 3 HOH B 8 708 47 HOH HOH . F 3 HOH B 9 709 113 HOH HOH . F 3 HOH B 10 710 11 HOH HOH . F 3 HOH B 11 711 96 HOH HOH . F 3 HOH B 12 712 45 HOH HOH . F 3 HOH B 13 713 120 HOH HOH . F 3 HOH B 14 714 8 HOH HOH . F 3 HOH B 15 715 88 HOH HOH . F 3 HOH B 16 716 77 HOH HOH . F 3 HOH B 17 717 92 HOH HOH . F 3 HOH B 18 718 23 HOH HOH . F 3 HOH B 19 719 40 HOH HOH . F 3 HOH B 20 720 122 HOH HOH . F 3 HOH B 21 721 33 HOH HOH . F 3 HOH B 22 722 75 HOH HOH . F 3 HOH B 23 723 74 HOH HOH . F 3 HOH B 24 724 110 HOH HOH . F 3 HOH B 25 725 111 HOH HOH . F 3 HOH B 26 726 59 HOH HOH . F 3 HOH B 27 727 50 HOH HOH . F 3 HOH B 28 728 63 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AU _atom_site.label_atom_id AU _atom_site.label_comp_id AU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.108 _atom_site.Cartn_y 33.631 _atom_site.Cartn_z 34.334 _atom_site.occupancy 0.18 _atom_site.B_iso_or_equiv 28.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AU _atom_site.auth_comp_id AU _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #