data_7YK1 # _model_server_result.job_id 70_Q3zZ3iTQBraHoy4_aQA _model_server_result.datetime_utc '2024-11-24 19:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 7YK1 # _exptl.entry_id 7YK1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YK1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 K N N ? 2 Q N N ? 2 T N N ? 2 Y N N ? 2 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 49 A ARG 49 1_555 J O1A ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale2 B NH2 ARG 49 B ARG 49 1_555 M O2A ADP . B ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale3 C NH2 ARG 49 C ARG 49 1_555 P O2A ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale4 D NH2 ARG 49 D ARG 49 1_555 S O2A ADP . D ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale5 E NH2 ARG 49 E ARG 49 1_555 W O1A ADP . E ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale6 F NH2 ARG 49 F ARG 49 1_555 BA O1A ADP . F ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc1 H MG MG . A MG 402 1_555 O O1A ADP . C ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 H MG MG . A MG 402 1_555 O O1B ADP . C ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 I O3B ADP . A ADP 403 1_555 R MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 I O2A ADP . A ADP 403 1_555 R MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 L MG MG . B MG 402 1_555 X O3B ADP . E ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 L MG MG . B MG 402 1_555 X O2A ADP . E ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 N O1B ADP . B ADP 404 1_555 Z MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc8 N O1A ADP . B ADP 404 1_555 Z MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc9 U MG MG . D MG 403 1_555 AA O2A ADP . F ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc10 U MG MG . D MG 403 1_555 AA O3B ADP . F ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc11 V O1B ADP . D ADP 404 1_555 DA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc12 V O1A ADP . D ADP 404 1_555 DA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 302 n n P O2 PO4 sing 303 n n P O3 PO4 sing 304 n n P O4 PO4 sing 305 n n # _atom_sites.entry_id 7YK1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 401 401 PO4 PO4 . H 3 MG A 1 402 404 MG MG . I 4 ADP A 1 403 403 ADP ADP . J 4 ADP A 1 404 402 ADP ADP . K 2 PO4 B 1 401 401 PO4 PO4 . L 3 MG B 1 402 404 MG MG . M 4 ADP B 1 403 402 ADP ADP . N 4 ADP B 1 404 403 ADP ADP . O 4 ADP C 1 401 403 ADP ADP . P 4 ADP C 1 402 402 ADP ADP . Q 2 PO4 C 1 403 401 PO4 PO4 . R 3 MG C 1 404 404 MG MG . S 4 ADP D 1 401 402 ADP ADP . T 2 PO4 D 1 402 401 PO4 PO4 . U 3 MG D 1 403 404 MG MG . V 4 ADP D 1 404 403 ADP ADP . W 4 ADP E 1 401 402 ADP ADP . X 4 ADP E 1 402 403 ADP ADP . Y 2 PO4 E 1 403 401 PO4 PO4 . Z 3 MG E 1 404 404 MG MG . AA 4 ADP F 1 401 403 ADP ADP . BA 4 ADP F 1 402 402 ADP ADP . CA 2 PO4 F 1 403 401 PO4 PO4 . DA 3 MG F 1 404 404 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 2 100.827 119.604 135.219 1 56.28 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . G 2 99.797 119.202 134.193 1 44.38 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . G 2 100.629 121.041 135.633 1 46.98 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . G 2 102.199 119.457 134.62 1 46.7 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . G 2 100.7 118.72 136.432 1 41.88 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #