data_7YK1
#
_model_server_result.job_id            1kEA7FZJjkg-8lCkJojPXg 
_model_server_result.datetime_utc      '2024-11-22 00:07:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":404}' 
#
_entry.id    7YK1 
#
_exptl.entry_id    7YK1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YK1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
? 3 R N N 
? 3 U N N 
? 3 Z N N 
? 3 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NH2 ARG 49 A ARG 49 1_555 J O1A ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 B NH2 ARG 49 B ARG 49 1_555 M O2A ADP . B ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale3 C NH2 ARG 49 C ARG 49 1_555 P O2A ADP . C ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale4 D NH2 ARG 49 D ARG 49 1_555 S O2A ADP . D ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale5 E NH2 ARG 49 E ARG 49 1_555 W O1A ADP . E ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale6 F NH2 ARG 49 F ARG 49 1_555 BA O1A ADP . F ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 H MG MG . A MG 402 1_555 O O1A ADP . C ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc2 H MG MG . A MG 402 1_555 O O1B ADP . C ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 I O3B ADP . A ADP 403 1_555 R MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 I O2A ADP . A ADP 403 1_555 R MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 L MG MG . B MG 402 1_555 X O3B ADP . E ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc6 L MG MG . B MG 402 1_555 X O2A ADP . E ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc7 N O1B ADP . B ADP 404 1_555 Z MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc8 N O1A ADP . B ADP 404 1_555 Z MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc9 U MG MG . D MG 403 1_555 AA O2A ADP . F ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc10 U MG MG . D MG 403 1_555 AA O3B ADP . F ADP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc11 V O1B ADP . D ADP 404 1_555 DA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc12 V O1A ADP . D ADP 404 1_555 DA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7YK1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PO4 A 1 401 401 PO4 PO4 . 
H 3 MG A 1 402 404 MG MG . 
I 4 ADP A 1 403 403 ADP ADP . 
J 4 ADP A 1 404 402 ADP ADP . 
K 2 PO4 B 1 401 401 PO4 PO4 . 
L 3 MG B 1 402 404 MG MG . 
M 4 ADP B 1 403 402 ADP ADP . 
N 4 ADP B 1 404 403 ADP ADP . 
O 4 ADP C 1 401 403 ADP ADP . 
P 4 ADP C 1 402 402 ADP ADP . 
Q 2 PO4 C 1 403 401 PO4 PO4 . 
R 3 MG C 1 404 404 MG MG . 
S 4 ADP D 1 401 402 ADP ADP . 
T 2 PO4 D 1 402 401 PO4 PO4 . 
U 3 MG D 1 403 404 MG MG . 
V 4 ADP D 1 404 403 ADP ADP . 
W 4 ADP E 1 401 402 ADP ADP . 
X 4 ADP E 1 402 403 ADP ADP . 
Y 2 PO4 E 1 403 401 PO4 PO4 . 
Z 3 MG E 1 404 404 MG MG . 
AA 4 ADP F 1 401 403 ADP ADP . 
BA 4 ADP F 1 402 402 ADP ADP . 
CA 2 PO4 F 1 403 401 PO4 PO4 . 
DA 3 MG F 1 404 404 MG MG . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         DA 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               155.82 
_atom_site.Cartn_y               113.872 
_atom_site.Cartn_z               136.716 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        8.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#