data_7YK3 # _model_server_result.job_id 3SD6CpgBc9ALCLSxJue4KQ _model_server_result.datetime_utc '2024-10-11 04:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7YK3 # _exptl.entry_id 7YK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.03 _cell.angle_beta 93.1 _cell.angle_gamma 102.69 _cell.entry_id 7YK3 _cell.length_a 40.53 _cell.length_b 54.55 _cell.length_c 93.09 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 7YK3 _atom_sites.fract_transf_matrix[1][1] 0.024673 _atom_sites.fract_transf_matrix[1][2] 0.005556 _atom_sites.fract_transf_matrix[1][3] 0.003002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018791 _atom_sites.fract_transf_matrix[2][3] 0.005447 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 301 2 PO4 PO4 . F 3 PO4 C 1 301 1 PO4 PO4 . G 4 HOH A 1 401 210 HOH HOH . G 4 HOH A 2 402 219 HOH HOH . G 4 HOH A 3 403 302 HOH HOH . G 4 HOH A 4 404 230 HOH HOH . G 4 HOH A 5 405 248 HOH HOH . G 4 HOH A 6 406 239 HOH HOH . G 4 HOH A 7 407 243 HOH HOH . G 4 HOH A 8 408 145 HOH HOH . G 4 HOH A 9 409 138 HOH HOH . G 4 HOH A 10 410 299 HOH HOH . G 4 HOH A 11 411 48 HOH HOH . G 4 HOH A 12 412 76 HOH HOH . G 4 HOH A 13 413 136 HOH HOH . G 4 HOH A 14 414 103 HOH HOH . G 4 HOH A 15 415 50 HOH HOH . G 4 HOH A 16 416 41 HOH HOH . G 4 HOH A 17 417 242 HOH HOH . G 4 HOH A 18 418 213 HOH HOH . G 4 HOH A 19 419 93 HOH HOH . G 4 HOH A 20 420 220 HOH HOH . G 4 HOH A 21 421 82 HOH HOH . G 4 HOH A 22 422 89 HOH HOH . G 4 HOH A 23 423 85 HOH HOH . G 4 HOH A 24 424 162 HOH HOH . G 4 HOH A 25 425 176 HOH HOH . G 4 HOH A 26 426 22 HOH HOH . G 4 HOH A 27 427 83 HOH HOH . G 4 HOH A 28 428 264 HOH HOH . G 4 HOH A 29 429 6 HOH HOH . G 4 HOH A 30 430 87 HOH HOH . G 4 HOH A 31 431 8 HOH HOH . G 4 HOH A 32 432 61 HOH HOH . G 4 HOH A 33 433 251 HOH HOH . G 4 HOH A 34 434 130 HOH HOH . G 4 HOH A 35 435 28 HOH HOH . G 4 HOH A 36 436 1 HOH HOH . G 4 HOH A 37 437 259 HOH HOH . G 4 HOH A 38 438 209 HOH HOH . G 4 HOH A 39 439 237 HOH HOH . G 4 HOH A 40 440 92 HOH HOH . G 4 HOH A 41 441 149 HOH HOH . G 4 HOH A 42 442 258 HOH HOH . G 4 HOH A 43 443 18 HOH HOH . G 4 HOH A 44 444 2 HOH HOH . G 4 HOH A 45 445 45 HOH HOH . G 4 HOH A 46 446 157 HOH HOH . G 4 HOH A 47 447 47 HOH HOH . G 4 HOH A 48 448 20 HOH HOH . G 4 HOH A 49 449 245 HOH HOH . G 4 HOH A 50 450 12 HOH HOH . G 4 HOH A 51 451 297 HOH HOH . G 4 HOH A 52 452 179 HOH HOH . G 4 HOH A 53 453 24 HOH HOH . G 4 HOH A 54 454 55 HOH HOH . G 4 HOH A 55 455 319 HOH HOH . G 4 HOH A 56 456 26 HOH HOH . G 4 HOH A 57 457 310 HOH HOH . G 4 HOH A 58 458 183 HOH HOH . G 4 HOH A 59 459 46 HOH HOH . G 4 HOH A 60 460 58 HOH HOH . G 4 HOH A 61 461 227 HOH HOH . G 4 HOH A 62 462 111 HOH HOH . G 4 HOH A 63 463 235 HOH HOH . G 4 HOH A 64 464 217 HOH HOH . G 4 HOH A 65 465 181 HOH HOH . G 4 HOH A 66 466 266 HOH HOH . G 4 HOH A 67 467 262 HOH HOH . G 4 HOH A 68 468 218 HOH HOH . G 4 HOH A 69 469 65 HOH HOH . G 4 HOH A 70 470 57 HOH HOH . G 4 HOH A 71 471 129 HOH HOH . G 4 HOH A 72 472 191 HOH HOH . G 4 HOH A 73 473 203 HOH HOH . G 4 HOH A 74 474 155 HOH HOH . G 4 HOH A 75 475 287 HOH HOH . G 4 HOH A 76 476 320 HOH HOH . G 4 HOH A 77 477 293 HOH HOH . G 4 HOH A 78 478 54 HOH HOH . G 4 HOH A 79 479 112 HOH HOH . G 4 HOH A 80 480 263 HOH HOH . G 4 HOH A 81 481 188 HOH HOH . G 4 HOH A 82 482 29 HOH HOH . G 4 HOH A 83 483 295 HOH HOH . G 4 HOH A 84 484 101 HOH HOH . G 4 HOH A 85 485 283 HOH HOH . G 4 HOH A 86 486 301 HOH HOH . G 4 HOH A 87 487 254 HOH HOH . G 4 HOH A 88 488 229 HOH HOH . G 4 HOH A 89 489 317 HOH HOH . G 4 HOH A 90 490 161 HOH HOH . G 4 HOH A 91 491 225 HOH HOH . G 4 HOH A 92 492 105 HOH HOH . G 4 HOH A 93 493 306 HOH HOH . G 4 HOH A 94 494 52 HOH HOH . G 4 HOH A 95 495 238 HOH HOH . G 4 HOH A 96 496 247 HOH HOH . G 4 HOH A 97 497 318 HOH HOH . G 4 HOH A 98 498 300 HOH HOH . G 4 HOH A 99 499 324 HOH HOH . G 4 HOH A 100 500 272 HOH HOH . G 4 HOH A 101 501 152 HOH HOH . G 4 HOH A 102 502 305 HOH HOH . G 4 HOH A 103 503 226 HOH HOH . G 4 HOH A 104 504 294 HOH HOH . G 4 HOH A 105 505 325 HOH HOH . H 4 HOH B 1 201 163 HOH HOH . H 4 HOH B 2 202 308 HOH HOH . H 4 HOH B 3 203 313 HOH HOH . H 4 HOH B 4 204 80 HOH HOH . H 4 HOH B 5 205 146 HOH HOH . H 4 HOH B 6 206 172 HOH HOH . H 4 HOH B 7 207 298 HOH HOH . H 4 HOH B 8 208 95 HOH HOH . H 4 HOH B 9 209 190 HOH HOH . H 4 HOH B 10 210 234 HOH HOH . H 4 HOH B 11 211 97 HOH HOH . H 4 HOH B 12 212 186 HOH HOH . H 4 HOH B 13 213 56 HOH HOH . H 4 HOH B 14 214 139 HOH HOH . H 4 HOH B 15 215 15 HOH HOH . H 4 HOH B 16 216 60 HOH HOH . H 4 HOH B 17 217 115 HOH HOH . H 4 HOH B 18 218 309 HOH HOH . H 4 HOH B 19 219 214 HOH HOH . H 4 HOH B 20 220 64 HOH HOH . H 4 HOH B 21 221 284 HOH HOH . H 4 HOH B 22 222 215 HOH HOH . H 4 HOH B 23 223 148 HOH HOH . H 4 HOH B 24 224 104 HOH HOH . H 4 HOH B 25 225 221 HOH HOH . H 4 HOH B 26 226 315 HOH HOH . H 4 HOH B 27 227 86 HOH HOH . H 4 HOH B 28 228 67 HOH HOH . H 4 HOH B 29 229 25 HOH HOH . H 4 HOH B 30 230 39 HOH HOH . H 4 HOH B 31 231 189 HOH HOH . H 4 HOH B 32 232 51 HOH HOH . H 4 HOH B 33 233 72 HOH HOH . H 4 HOH B 34 234 316 HOH HOH . H 4 HOH B 35 235 84 HOH HOH . H 4 HOH B 36 236 106 HOH HOH . H 4 HOH B 37 237 31 HOH HOH . H 4 HOH B 38 238 34 HOH HOH . H 4 HOH B 39 239 119 HOH HOH . H 4 HOH B 40 240 142 HOH HOH . H 4 HOH B 41 241 21 HOH HOH . H 4 HOH B 42 242 113 HOH HOH . H 4 HOH B 43 243 151 HOH HOH . H 4 HOH B 44 244 100 HOH HOH . H 4 HOH B 45 245 124 HOH HOH . H 4 HOH B 46 246 49 HOH HOH . H 4 HOH B 47 247 261 HOH HOH . H 4 HOH B 48 248 3 HOH HOH . H 4 HOH B 49 249 128 HOH HOH . H 4 HOH B 50 250 53 HOH HOH . H 4 HOH B 51 251 166 HOH HOH . H 4 HOH B 52 252 307 HOH HOH . H 4 HOH B 53 253 131 HOH HOH . H 4 HOH B 54 254 205 HOH HOH . H 4 HOH B 55 255 222 HOH HOH . H 4 HOH B 56 256 150 HOH HOH . H 4 HOH B 57 257 121 HOH HOH . H 4 HOH B 58 258 285 HOH HOH . H 4 HOH B 59 259 81 HOH HOH . H 4 HOH B 60 260 32 HOH HOH . H 4 HOH B 61 261 137 HOH HOH . H 4 HOH B 62 262 274 HOH HOH . H 4 HOH B 63 263 275 HOH HOH . H 4 HOH B 64 264 196 HOH HOH . H 4 HOH B 65 265 241 HOH HOH . H 4 HOH B 66 266 201 HOH HOH . H 4 HOH B 67 267 147 HOH HOH . H 4 HOH B 68 268 27 HOH HOH . H 4 HOH B 69 269 197 HOH HOH . H 4 HOH B 70 270 279 HOH HOH . H 4 HOH B 71 271 173 HOH HOH . H 4 HOH B 72 272 135 HOH HOH . H 4 HOH B 73 273 281 HOH HOH . H 4 HOH B 74 274 252 HOH HOH . H 4 HOH B 75 275 296 HOH HOH . H 4 HOH B 76 276 265 HOH HOH . H 4 HOH B 77 277 185 HOH HOH . H 4 HOH B 78 278 116 HOH HOH . H 4 HOH B 79 279 192 HOH HOH . H 4 HOH B 80 280 33 HOH HOH . H 4 HOH B 81 281 117 HOH HOH . H 4 HOH B 82 282 257 HOH HOH . I 4 HOH C 1 401 273 HOH HOH . I 4 HOH C 2 402 78 HOH HOH . I 4 HOH C 3 403 182 HOH HOH . I 4 HOH C 4 404 202 HOH HOH . I 4 HOH C 5 405 174 HOH HOH . I 4 HOH C 6 406 171 HOH HOH . I 4 HOH C 7 407 304 HOH HOH . I 4 HOH C 8 408 143 HOH HOH . I 4 HOH C 9 409 327 HOH HOH . I 4 HOH C 10 410 156 HOH HOH . I 4 HOH C 11 411 5 HOH HOH . I 4 HOH C 12 412 269 HOH HOH . I 4 HOH C 13 413 195 HOH HOH . I 4 HOH C 14 414 35 HOH HOH . I 4 HOH C 15 415 17 HOH HOH . I 4 HOH C 16 416 90 HOH HOH . I 4 HOH C 17 417 71 HOH HOH . I 4 HOH C 18 418 288 HOH HOH . I 4 HOH C 19 419 193 HOH HOH . I 4 HOH C 20 420 126 HOH HOH . I 4 HOH C 21 421 231 HOH HOH . I 4 HOH C 22 422 77 HOH HOH . I 4 HOH C 23 423 14 HOH HOH . I 4 HOH C 24 424 140 HOH HOH . I 4 HOH C 25 425 44 HOH HOH . I 4 HOH C 26 426 9 HOH HOH . I 4 HOH C 27 427 206 HOH HOH . I 4 HOH C 28 428 125 HOH HOH . I 4 HOH C 29 429 232 HOH HOH . I 4 HOH C 30 430 88 HOH HOH . I 4 HOH C 31 431 7 HOH HOH . I 4 HOH C 32 432 154 HOH HOH . I 4 HOH C 33 433 30 HOH HOH . I 4 HOH C 34 434 37 HOH HOH . I 4 HOH C 35 435 36 HOH HOH . I 4 HOH C 36 436 244 HOH HOH . I 4 HOH C 37 437 11 HOH HOH . I 4 HOH C 38 438 267 HOH HOH . I 4 HOH C 39 439 323 HOH HOH . I 4 HOH C 40 440 114 HOH HOH . I 4 HOH C 41 441 99 HOH HOH . I 4 HOH C 42 442 184 HOH HOH . I 4 HOH C 43 443 23 HOH HOH . I 4 HOH C 44 444 70 HOH HOH . I 4 HOH C 45 445 68 HOH HOH . I 4 HOH C 46 446 223 HOH HOH . I 4 HOH C 47 447 73 HOH HOH . I 4 HOH C 48 448 164 HOH HOH . I 4 HOH C 49 449 91 HOH HOH . I 4 HOH C 50 450 134 HOH HOH . I 4 HOH C 51 451 250 HOH HOH . I 4 HOH C 52 452 79 HOH HOH . I 4 HOH C 53 453 329 HOH HOH . I 4 HOH C 54 454 127 HOH HOH . I 4 HOH C 55 455 63 HOH HOH . I 4 HOH C 56 456 107 HOH HOH . I 4 HOH C 57 457 144 HOH HOH . I 4 HOH C 58 458 198 HOH HOH . I 4 HOH C 59 459 16 HOH HOH . I 4 HOH C 60 460 303 HOH HOH . I 4 HOH C 61 461 326 HOH HOH . I 4 HOH C 62 462 165 HOH HOH . I 4 HOH C 63 463 249 HOH HOH . I 4 HOH C 64 464 62 HOH HOH . I 4 HOH C 65 465 255 HOH HOH . I 4 HOH C 66 466 328 HOH HOH . I 4 HOH C 67 467 207 HOH HOH . I 4 HOH C 68 468 153 HOH HOH . I 4 HOH C 69 469 178 HOH HOH . I 4 HOH C 70 470 224 HOH HOH . I 4 HOH C 71 471 169 HOH HOH . I 4 HOH C 72 472 270 HOH HOH . I 4 HOH C 73 473 260 HOH HOH . I 4 HOH C 74 474 280 HOH HOH . I 4 HOH C 75 475 199 HOH HOH . I 4 HOH C 76 476 233 HOH HOH . J 4 HOH D 1 201 253 HOH HOH . J 4 HOH D 2 202 278 HOH HOH . J 4 HOH D 3 203 177 HOH HOH . J 4 HOH D 4 204 322 HOH HOH . J 4 HOH D 5 205 94 HOH HOH . J 4 HOH D 6 206 160 HOH HOH . J 4 HOH D 7 207 10 HOH HOH . J 4 HOH D 8 208 194 HOH HOH . J 4 HOH D 9 209 74 HOH HOH . J 4 HOH D 10 210 120 HOH HOH . J 4 HOH D 11 211 102 HOH HOH . J 4 HOH D 12 212 321 HOH HOH . J 4 HOH D 13 213 292 HOH HOH . J 4 HOH D 14 214 282 HOH HOH . J 4 HOH D 15 215 110 HOH HOH . J 4 HOH D 16 216 208 HOH HOH . J 4 HOH D 17 217 75 HOH HOH . J 4 HOH D 18 218 13 HOH HOH . J 4 HOH D 19 219 19 HOH HOH . J 4 HOH D 20 220 216 HOH HOH . J 4 HOH D 21 221 132 HOH HOH . J 4 HOH D 22 222 4 HOH HOH . J 4 HOH D 23 223 66 HOH HOH . J 4 HOH D 24 224 59 HOH HOH . J 4 HOH D 25 225 180 HOH HOH . J 4 HOH D 26 226 312 HOH HOH . J 4 HOH D 27 227 170 HOH HOH . J 4 HOH D 28 228 167 HOH HOH . J 4 HOH D 29 229 122 HOH HOH . J 4 HOH D 30 230 246 HOH HOH . J 4 HOH D 31 231 98 HOH HOH . J 4 HOH D 32 232 314 HOH HOH . J 4 HOH D 33 233 277 HOH HOH . J 4 HOH D 34 234 38 HOH HOH . J 4 HOH D 35 235 96 HOH HOH . J 4 HOH D 36 236 42 HOH HOH . J 4 HOH D 37 237 133 HOH HOH . J 4 HOH D 38 238 256 HOH HOH . J 4 HOH D 39 239 108 HOH HOH . J 4 HOH D 40 240 159 HOH HOH . J 4 HOH D 41 241 40 HOH HOH . J 4 HOH D 42 242 43 HOH HOH . J 4 HOH D 43 243 276 HOH HOH . J 4 HOH D 44 244 290 HOH HOH . J 4 HOH D 45 245 212 HOH HOH . J 4 HOH D 46 246 109 HOH HOH . J 4 HOH D 47 247 118 HOH HOH . J 4 HOH D 48 248 187 HOH HOH . J 4 HOH D 49 249 236 HOH HOH . J 4 HOH D 50 250 268 HOH HOH . J 4 HOH D 51 251 228 HOH HOH . J 4 HOH D 52 252 168 HOH HOH . J 4 HOH D 53 253 69 HOH HOH . J 4 HOH D 54 254 291 HOH HOH . J 4 HOH D 55 255 240 HOH HOH . J 4 HOH D 56 256 286 HOH HOH . J 4 HOH D 57 257 289 HOH HOH . J 4 HOH D 58 258 211 HOH HOH . J 4 HOH D 59 259 141 HOH HOH . J 4 HOH D 60 260 311 HOH HOH . J 4 HOH D 61 261 158 HOH HOH . J 4 HOH D 62 262 271 HOH HOH . J 4 HOH D 63 263 204 HOH HOH . J 4 HOH D 64 264 123 HOH HOH . J 4 HOH D 65 265 175 HOH HOH . J 4 HOH D 66 266 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 3 3.543 38.365 16.752 1 15.25 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . E 3 2.297 38.675 15.984 1 37.82 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . E 3 4.743 38.925 16.041 1 42 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . E 3 3.631 36.871 16.873 1 41.57 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . E 3 3.545 38.907 18.146 1 32.93 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #