data_7YK6
#
_model_server_result.job_id            rKnsL3UHcMxgZGN_LwuA6A 
_model_server_result.datetime_utc      '2024-12-27 00:17:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yk6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    7YK6 
#
_exptl.entry_id    7YK6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              383.875 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[2-(4-chlorophenyl)ethyl]-3-[(7-ethyl-5-oxidanyl-1H-indol-3-yl)methylideneamino]guanidine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YK6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YK6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 114 R CYS 114 1_555 C SG CYS 191 R CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 160 S CYS 159 1_555 D SG CYS 230 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C20 H22 Cl N5 O' 
_chem_comp.formula_weight    383.875 
_chem_comp.id                IYF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[2-(4-chlorophenyl)ethyl]-3-[(7-ethyl-5-oxidanyl-1H-indol-3-yl)methylideneamino]guanidine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C20 IYF doub 171 n y 
C19 C18 IYF sing 172 n y 
C20 C21 IYF sing 173 n y 
C17 C18 IYF sing 174 n n 
C17 C16 IYF sing 175 n n 
C18 C24 IYF doub 176 n y 
C21 CL1 IYF sing 177 n n 
C21 C23 IYF doub 178 n y 
C16 N15 IYF sing 179 n n 
C24 C23 IYF sing 180 n y 
N15 C13 IYF sing 181 n n 
C13 N14 IYF doub 182 n n 
C13 N12 IYF sing 183 n n 
N12 N11 IYF sing 184 n n 
N11 C10 IYF doub 185 e n 
C10 C9 IYF sing 186 n n 
C25 C9 IYF doub 187 n y 
C25 N26 IYF sing 188 n y 
C9 C8 IYF sing 189 n y 
N26 C27 IYF sing 190 n y 
C8 C7 IYF doub 191 n y 
C8 C27 IYF sing 192 n y 
C7 C5 IYF sing 193 n y 
C27 C3 IYF doub 194 n y 
C3 C4 IYF sing 195 n y 
C3 C2 IYF sing 196 n n 
C5 C4 IYF doub 197 n y 
C5 O6 IYF sing 198 n n 
C2 C1 IYF sing 199 n n 
C10 H1 IYF sing 200 n n 
C16 H3 IYF sing 201 n n 
C16 H4 IYF sing 202 n n 
C17 H5 IYF sing 203 n n 
C17 H6 IYF sing 204 n n 
C19 H7 IYF sing 205 n n 
C20 H8 IYF sing 206 n n 
C23 H9 IYF sing 207 n n 
C24 H10 IYF sing 208 n n 
C25 H11 IYF sing 209 n n 
C1 H12 IYF sing 210 n n 
C1 H13 IYF sing 211 n n 
C1 H14 IYF sing 212 n n 
C2 H15 IYF sing 213 n n 
C2 H16 IYF sing 214 n n 
C4 H17 IYF sing 215 n n 
C7 H18 IYF sing 216 n n 
N12 H20 IYF sing 217 n n 
N14 H21 IYF sing 218 n n 
N15 H22 IYF sing 219 n n 
N26 H23 IYF sing 220 n n 
O6 H24 IYF sing 221 n n 
#
_atom_sites.entry_id                     7YK6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           IYF 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       IYF 
_pdbx_nonpoly_scheme.auth_mon_id      CPD 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 IYF . . . F 6 129.97 144.573 102.464 1 70.68 ? C10 IYF 601 R 1 
HETATM 2 C C13 IYF . . . F 6 129.433 146.606 100.161 1 70.68 ? C13 IYF 601 R 1 
HETATM 3 C C16 IYF . . . F 6 130.244 145.792 98.032 1 70.68 ? C16 IYF 601 R 1 
HETATM 4 C C17 IYF . . . F 6 130.631 146.363 96.651 1 70.68 ? C17 IYF 601 R 1 
HETATM 5 C C18 IYF . . . F 6 131.867 147.258 96.807 1 70.68 ? C18 IYF 601 R 1 
HETATM 6 C C19 IYF . . . F 6 132.669 147.533 95.713 1 70.68 ? C19 IYF 601 R 1 
HETATM 7 C C20 IYF . . . F 6 133.781 148.338 95.866 1 70.68 ? C20 IYF 601 R 1 
HETATM 8 C C21 IYF . . . F 6 134.093 148.865 97.108 1 70.68 ? C21 IYF 601 R 1 
HETATM 9 C C23 IYF . . . F 6 133.294 148.585 98.199 1 70.68 ? C23 IYF 601 R 1 
HETATM 10 C C24 IYF . . . F 6 132.183 147.786 98.048 1 70.68 ? C24 IYF 601 R 1 
HETATM 11 C C25 IYF . . . F 6 131.605 146.24 103.075 1 70.68 ? C25 IYF 601 R 1 
HETATM 12 C C27 IYF . . . F 6 132.804 145.043 104.745 1 70.68 ? C27 IYF 601 R 1 
HETATM 13 C C1 IYF . . . F 6 134.102 146.777 106.724 1 70.68 ? C1 IYF 601 R 1 
HETATM 14 C C2 IYF . . . F 6 134.74 145.471 106.25 1 70.68 ? C2 IYF 601 R 1 
HETATM 15 C C3 IYF . . . F 6 133.64 144.571 105.719 1 70.68 ? C3 IYF 601 R 1 
HETATM 16 C C4 IYF . . . F 6 133.478 143.278 106.223 1 70.68 ? C4 IYF 601 R 1 
HETATM 17 C C5 IYF . . . F 6 132.441 142.443 105.725 1 70.68 ? C5 IYF 601 R 1 
HETATM 18 C C7 IYF . . . F 6 131.577 142.913 104.72 1 70.68 ? C7 IYF 601 R 1 
HETATM 19 C C8 IYF . . . F 6 131.731 144.172 104.226 1 70.68 ? C8 IYF 601 R 1 
HETATM 20 C C9 IYF . . . F 6 131.182 145.062 103.295 1 70.68 ? C9 IYF 601 R 1 
HETATM 21 N N11 IYF . . . F 6 128.983 145.656 102.293 1 70.68 ? N11 IYF 601 R 1 
HETATM 22 N N12 IYF . . . F 6 128.56 145.685 100.928 1 70.68 ? N12 IYF 601 R 1 
HETATM 23 N N14 IYF . . . F 6 130.074 147.492 100.771 1 70.68 ? N14 IYF 601 R 1 
HETATM 24 N N15 IYF . . . F 6 129.299 146.706 98.698 1 70.68 ? N15 IYF 601 R 1 
HETATM 25 N N26 IYF . . . F 6 132.631 146.307 103.951 1 70.68 ? N26 IYF 601 R 1 
HETATM 26 O O6 IYF . . . F 6 132.285 141.163 106.237 1 70.68 ? O6 IYF 601 R 1 
HETATM 27 CL CL1 IYF . . . F 6 135.523 149.899 97.306 1 70.68 ? CL1 IYF 601 R 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           27 
#