data_7YKD # _model_server_result.job_id AvMF_Uk20WsLuTujvAb1Tw _model_server_result.datetime_utc '2024-10-11 00:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ykd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 7YKD # _exptl.entry_id 7YKD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 112 A CYS 112 1_555 B SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 F SG CYS 22 S CYS 22 1_555 F SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 F SG CYS 159 S CYS 159 1_555 F SG CYS 229 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YKD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 CLR A 1 401 401 CLR CLR . H 7 CLR A 1 402 402 CLR CLR . I 7 CLR A 1 403 403 CLR CLR . J 7 CLR A 1 404 404 CLR CLR . K 7 CLR A 1 405 405 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 7 132.187 110.944 108.207 1 20 ? C1 CLR 401 A 1 HETATM 2 C C2 CLR . . . G 7 132.775 109.56 108.472 1 20 ? C2 CLR 401 A 1 HETATM 3 C C3 CLR . . . G 7 132.006 108.645 109.418 1 20 ? C3 CLR 401 A 1 HETATM 4 C C4 CLR . . . G 7 131.088 109.393 110.373 1 20 ? C4 CLR 401 A 1 HETATM 5 C C5 CLR . . . G 7 130.352 110.575 109.788 1 20 ? C5 CLR 401 A 1 HETATM 6 C C6 CLR . . . G 7 129.41 111.106 110.587 1 20 ? C6 CLR 401 A 1 HETATM 7 C C7 CLR . . . G 7 128.613 112.344 110.266 1 20 ? C7 CLR 401 A 1 HETATM 8 C C8 CLR . . . G 7 128.844 112.841 108.851 1 20 ? C8 CLR 401 A 1 HETATM 9 C C9 CLR . . . G 7 130.314 112.637 108.46 1 20 ? C9 CLR 401 A 1 HETATM 10 C C10 CLR . . . G 7 130.683 111.135 108.428 1 20 ? C10 CLR 401 A 1 HETATM 11 C C11 CLR . . . G 7 130.759 113.436 107.213 1 20 ? C11 CLR 401 A 1 HETATM 12 C C12 CLR . . . G 7 130.15 114.821 107.012 1 20 ? C12 CLR 401 A 1 HETATM 13 C C13 CLR . . . G 7 128.661 114.906 107.306 1 20 ? C13 CLR 401 A 1 HETATM 14 C C14 CLR . . . G 7 128.481 114.313 108.701 1 20 ? C14 CLR 401 A 1 HETATM 15 C C15 CLR . . . G 7 127.074 114.699 109.122 1 20 ? C15 CLR 401 A 1 HETATM 16 C C16 CLR . . . G 7 126.874 116.054 108.469 1 20 ? C16 CLR 401 A 1 HETATM 17 C C17 CLR . . . G 7 128.082 116.318 107.549 1 20 ? C17 CLR 401 A 1 HETATM 18 C C18 CLR . . . G 7 127.88 114.157 106.193 1 20 ? C18 CLR 401 A 1 HETATM 19 C C19 CLR . . . G 7 129.883 110.315 107.395 1 20 ? C19 CLR 401 A 1 HETATM 20 C C20 CLR . . . G 7 127.732 117.244 106.36 1 20 ? C20 CLR 401 A 1 HETATM 21 C C21 CLR . . . G 7 128.863 117.467 105.35 1 20 ? C21 CLR 401 A 1 HETATM 22 C C22 CLR . . . G 7 127.287 118.639 106.828 1 20 ? C22 CLR 401 A 1 HETATM 23 C C23 CLR . . . G 7 126.022 119.086 106.107 1 20 ? C23 CLR 401 A 1 HETATM 24 C C24 CLR . . . G 7 125.72 120.561 106.35 1 20 ? C24 CLR 401 A 1 HETATM 25 C C25 CLR . . . G 7 125.915 121.382 105.082 1 20 ? C25 CLR 401 A 1 HETATM 26 C C26 CLR . . . G 7 125.115 122.676 105.167 1 20 ? C26 CLR 401 A 1 HETATM 27 C C27 CLR . . . G 7 127.389 121.672 104.824 1 20 ? C27 CLR 401 A 1 HETATM 28 O O1 CLR . . . G 7 131.239 107.694 108.668 1 20 ? O1 CLR 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #