data_7YKL
#
_model_server_result.job_id            mOhpWbNGXc6ZmT3U-E5Ugw 
_model_server_result.datetime_utc      '2024-12-18 19:21:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ykl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":801}' 
#
_entry.id    7YKL 
#
_exptl.entry_id    7YKL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YKL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7YKL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ATP F 1 801 801 ATP ATP . 
H 2 ATP A 1 801 801 ATP ATP . 
I 2 ATP B 1 801 801 ATP ATP . 
J 2 ATP C 1 801 801 ATP ATP . 
K 2 ATP D 1 801 801 ATP ATP . 
L 2 ATP E 1 801 801 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . L 2 101.779 105.323 125.499 1 149.9 ? PG ATP 801 E 1 
HETATM 2 O O1G ATP . . . L 2 102.935 104.491 125.938 1 149.9 ? O1G ATP 801 E 1 
HETATM 3 O O2G ATP . . . L 2 102.185 106.568 124.702 1 149.9 ? O2G ATP 801 E 1 
HETATM 4 O O3G ATP . . . L 2 100.853 105.744 126.646 1 149.9 ? O3G ATP 801 E 1 
HETATM 5 P PB ATP . . . L 2 99.719 103.365 124.546 1 149.9 ? PB ATP 801 E 1 
HETATM 6 O O1B ATP . . . L 2 98.422 103.85 124.033 1 149.9 ? O1B ATP 801 E 1 
HETATM 7 O O2B ATP . . . L 2 99.7 102.798 125.965 1 149.9 ? O2B ATP 801 E 1 
HETATM 8 O O3B ATP . . . L 2 100.836 104.498 124.504 1 149.9 ? O3B ATP 801 E 1 
HETATM 9 P PA ATP . . . L 2 99.895 100.857 122.981 1 149.9 ? PA ATP 801 E 1 
HETATM 10 O O1A ATP . . . L 2 98.588 100.966 122.301 1 149.9 ? O1A ATP 801 E 1 
HETATM 11 O O2A ATP . . . L 2 101.041 100.36 122.1 1 149.9 ? O2A ATP 801 E 1 
HETATM 12 O O3A ATP . . . L 2 100.352 102.25 123.601 1 149.9 ? O3A ATP 801 E 1 
HETATM 13 O O5' ATP . . . L 2 99.797 99.916 124.246 1 149.9 ? O5' ATP 801 E 1 
HETATM 14 C C5' ATP . . . L 2 100.872 99.02 124.598 1 149.9 ? C5' ATP 801 E 1 
HETATM 15 C C4' ATP . . . L 2 100.396 97.595 124.463 1 149.9 ? C4' ATP 801 E 1 
HETATM 16 O O4' ATP . . . L 2 99.972 97.103 125.753 1 149.9 ? O4' ATP 801 E 1 
HETATM 17 C C3' ATP . . . L 2 99.196 97.392 123.545 1 149.9 ? C3' ATP 801 E 1 
HETATM 18 O O3' ATP . . . L 2 99.609 97.219 122.194 1 149.9 ? O3' ATP 801 E 1 
HETATM 19 C C2' ATP . . . L 2 98.562 96.121 124.114 1 149.9 ? C2' ATP 801 E 1 
HETATM 20 O O2' ATP . . . L 2 99.203 94.947 123.629 1 149.9 ? O2' ATP 801 E 1 
HETATM 21 C C1' ATP . . . L 2 98.816 96.292 125.615 1 149.9 ? C1' ATP 801 E 1 
HETATM 22 N N9 ATP . . . L 2 97.721 96.924 126.344 1 149.9 ? N9 ATP 801 E 1 
HETATM 23 C C8 ATP . . . L 2 97.732 98.156 126.945 1 149.9 ? C8 ATP 801 E 1 
HETATM 24 N N7 ATP . . . L 2 96.606 98.474 127.537 1 149.9 ? N7 ATP 801 E 1 
HETATM 25 C C5 ATP . . . L 2 95.794 97.372 127.311 1 149.9 ? C5 ATP 801 E 1 
HETATM 26 C C6 ATP . . . L 2 94.467 97.079 127.677 1 149.9 ? C6 ATP 801 E 1 
HETATM 27 N N6 ATP . . . L 2 93.689 97.906 128.383 1 149.9 ? N6 ATP 801 E 1 
HETATM 28 N N1 ATP . . . L 2 93.956 95.888 127.291 1 149.9 ? N1 ATP 801 E 1 
HETATM 29 C C2 ATP . . . L 2 94.727 95.057 126.585 1 149.9 ? C2 ATP 801 E 1 
HETATM 30 N N3 ATP . . . L 2 95.988 95.226 126.18 1 149.9 ? N3 ATP 801 E 1 
HETATM 31 C C4 ATP . . . L 2 96.469 96.408 126.58 1 149.9 ? C4 ATP 801 E 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#