data_7YL1 # _model_server_result.job_id ZkHpYhOYleshpkVue7mixg _model_server_result.datetime_utc '2024-11-07 13:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7YL1 # _exptl.entry_id 7YL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-hexyl-3-methyl-8-sulfanylidene-9H-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YL1 _cell.length_a 50.149 _cell.length_b 71.985 _cell.length_c 107.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H18 N4 O2 S' _chem_comp.formula_weight 282.362 _chem_comp.id J6F _chem_comp.mon_nstd_flag . _chem_comp.name 7-hexyl-3-methyl-8-sulfanylidene-9H-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S8 C8 J6F doub 173 n n CAJ N7 J6F sing 174 n n CAJ CAI J6F sing 175 n n C8 N7 J6F sing 176 n n C8 N9 J6F sing 177 n n N7 C5 J6F sing 178 n n CAI CAH J6F sing 179 n n CAH CAG J6F sing 180 n n N9 C4 J6F sing 181 n n C5 C4 J6F doub 182 n n C5 C6 J6F sing 183 n n CAG CAF J6F sing 184 n n C4 N3 J6F sing 185 n n O6 C6 J6F doub 186 n n C6 N1 J6F sing 187 n n N3 CAB J6F sing 188 n n N3 C2 J6F sing 189 n n CAF CAA J6F sing 190 n n N1 C2 J6F sing 191 n n C2 O2 J6F doub 192 n n N1 H1 J6F sing 193 n n CAA H2 J6F sing 194 n n CAA H3 J6F sing 195 n n CAA H4 J6F sing 196 n n CAF H5 J6F sing 197 n n CAF H6 J6F sing 198 n n CAG H7 J6F sing 199 n n CAG H8 J6F sing 200 n n CAH H9 J6F sing 201 n n CAH H10 J6F sing 202 n n CAI H11 J6F sing 203 n n CAI H12 J6F sing 204 n n CAJ H13 J6F sing 205 n n CAJ H14 J6F sing 206 n n CAB H15 J6F sing 207 n n CAB H16 J6F sing 208 n n CAB H17 J6F sing 209 n n N9 H18 J6F sing 210 n n # _atom_sites.entry_id 7YL1 _atom_sites.fract_transf_matrix[1][1] 0.019941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J6F A 1 501 1 J6F DRG . C 3 HOH A 1 601 21 HOH HOH . C 3 HOH A 2 602 30 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 32 HOH HOH . C 3 HOH A 5 605 43 HOH HOH . C 3 HOH A 6 606 9 HOH HOH . C 3 HOH A 7 607 1 HOH HOH . C 3 HOH A 8 608 41 HOH HOH . C 3 HOH A 9 609 48 HOH HOH . C 3 HOH A 10 610 26 HOH HOH . C 3 HOH A 11 611 2 HOH HOH . C 3 HOH A 12 612 31 HOH HOH . C 3 HOH A 13 613 20 HOH HOH . C 3 HOH A 14 614 18 HOH HOH . C 3 HOH A 15 615 35 HOH HOH . C 3 HOH A 16 616 4 HOH HOH . C 3 HOH A 17 617 27 HOH HOH . C 3 HOH A 18 618 12 HOH HOH . C 3 HOH A 19 619 16 HOH HOH . C 3 HOH A 20 620 45 HOH HOH . C 3 HOH A 21 621 24 HOH HOH . C 3 HOH A 22 622 36 HOH HOH . C 3 HOH A 23 623 37 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 28 HOH HOH . C 3 HOH A 26 626 29 HOH HOH . C 3 HOH A 27 627 10 HOH HOH . C 3 HOH A 28 628 5 HOH HOH . C 3 HOH A 29 629 11 HOH HOH . C 3 HOH A 30 630 6 HOH HOH . C 3 HOH A 31 631 47 HOH HOH . C 3 HOH A 32 632 7 HOH HOH . C 3 HOH A 33 633 19 HOH HOH . C 3 HOH A 34 634 44 HOH HOH . C 3 HOH A 35 635 46 HOH HOH . C 3 HOH A 36 636 8 HOH HOH . C 3 HOH A 37 637 14 HOH HOH . C 3 HOH A 38 638 15 HOH HOH . C 3 HOH A 39 639 13 HOH HOH . C 3 HOH A 40 640 23 HOH HOH . C 3 HOH A 41 641 42 HOH HOH . C 3 HOH A 42 642 39 HOH HOH . C 3 HOH A 43 643 22 HOH HOH . C 3 HOH A 44 644 49 HOH HOH . C 3 HOH A 45 645 17 HOH HOH . C 3 HOH A 46 646 38 HOH HOH . C 3 HOH A 47 647 33 HOH HOH . C 3 HOH A 48 648 34 HOH HOH . C 3 HOH A 49 649 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 J6F . . . B 2 4.637 26.767 32.137 1 51.31 ? C4 J6F 501 A 1 HETATM 2 C C5 J6F . . . B 2 4.811 28.1 31.914 1 48.67 ? C5 J6F 501 A 1 HETATM 3 C C6 J6F . . . B 2 5.855 28.752 32.47 1 49.22 ? C6 J6F 501 A 1 HETATM 4 C C8 J6F . . . B 2 3.059 27.443 30.857 1 46.6 ? C8 J6F 501 A 1 HETATM 5 N N1 J6F . . . B 2 6.763 28.046 33.272 1 46.14 ? N1 J6F 501 A 1 HETATM 6 N N3 J6F . . . B 2 5.501 26.056 32.927 1 48.77 ? N3 J6F 501 A 1 HETATM 7 C CAA J6F . . . B 2 0.338 34.184 33.817 1 55.84 ? CAA J6F 501 A 1 HETATM 8 C CAF J6F . . . B 2 1.584 33.679 33.057 1 49.75 ? CAF J6F 501 A 1 HETATM 9 C CAG J6F . . . B 2 1.213 32.548 32.092 1 46.36 ? CAG J6F 501 A 1 HETATM 10 C CAH J6F . . . B 2 2.498 32.01 31.449 1 49.8 ? CAH J6F 501 A 1 HETATM 11 C CAI J6F . . . B 2 2.312 30.515 31.159 1 50.93 ? CAI J6F 501 A 1 HETATM 12 C CAJ J6F . . . B 2 3.607 29.903 30.6 1 47.8 ? CAJ J6F 501 A 1 HETATM 13 N N7 J6F . . . B 2 3.82 28.511 31.108 1 46.85 ? N7 J6F 501 A 1 HETATM 14 O O6 J6F . . . B 2 6.051 29.958 32.292 1 50.42 ? O6 J6F 501 A 1 HETATM 15 C C2 J6F . . . B 2 6.552 26.668 33.498 1 47.09 ? C2 J6F 501 A 1 HETATM 16 O O2 J6F . . . B 2 7.324 26.01 34.207 1 51.86 ? O2 J6F 501 A 1 HETATM 17 C CAB J6F . . . B 2 5.319 24.588 33.17 1 46.61 ? CAB J6F 501 A 1 HETATM 18 N N9 J6F . . . B 2 3.534 26.37 31.48 1 49.81 ? N9 J6F 501 A 1 HETATM 19 S S8 J6F . . . B 2 1.652 27.405 29.856 1 41.89 ? S8 J6F 501 A 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #