data_7YL5
#
_model_server_result.job_id            RlRu309iRTkVQ24DobogZw 
_model_server_result.datetime_utc      '2024-11-22 05:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":602}' 
#
_entry.id    7YL5 
#
_exptl.entry_id    7YL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YL5 
_cell.length_a            43.312 
_cell.length_b            273.164 
_cell.length_c            322.789 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,GA 1 1 
B,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 146 A ASP 152 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc2 A OD2 ASP 146 A ASP 152 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc3 A O TYR 148 A TYR 154 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc4 A OD1 ASN 150 A ASN 156 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc5 A OD2 ASP 160 A ASP 166 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc6 B OD1 ASP 146 B ASP 152 1_555 N CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc7 B OD2 ASP 146 B ASP 152 1_555 N CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc8 B O TYR 148 B TYR 154 1_555 N CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? 
metalc ? metalc9 B OD1 ASN 150 B ASN 156 1_555 N CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc10 B OD2 ASP 160 B ASP 166 1_555 N CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc11 N CA CA . B CA 601 1_555 HA O HOH . B HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 205 n n 
C1 O1 MAN sing 206 n n 
C1 O5 MAN sing 207 n n 
C1 H1 MAN sing 208 n n 
C2 C3 MAN sing 209 n n 
C2 O2 MAN sing 210 n n 
C2 H2 MAN sing 211 n n 
C3 C4 MAN sing 212 n n 
C3 O3 MAN sing 213 n n 
C3 H3 MAN sing 214 n n 
C4 C5 MAN sing 215 n n 
C4 O4 MAN sing 216 n n 
C4 H4 MAN sing 217 n n 
C5 C6 MAN sing 218 n n 
C5 O5 MAN sing 219 n n 
C5 H5 MAN sing 220 n n 
C6 O6 MAN sing 221 n n 
C6 H61 MAN sing 222 n n 
C6 H62 MAN sing 223 n n 
O1 HO1 MAN sing 224 n n 
O2 HO2 MAN sing 225 n n 
O3 HO3 MAN sing 226 n n 
O4 HO4 MAN sing 227 n n 
O6 HO6 MAN sing 228 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7YL5 
_atom_sites.fract_transf_matrix[1][1]    0.023088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003098 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 601 601 CA CA . 
D 3 MAN A 1 602 701 MAN MAN . 
E 4 SO4 A 1 603 801 SO4 SO4 . 
F 4 SO4 A 1 604 802 SO4 SO4 . 
G 4 SO4 A 1 605 803 SO4 SO4 . 
H 4 SO4 A 1 606 804 SO4 SO4 . 
I 4 SO4 A 1 607 806 SO4 SO4 . 
J 4 SO4 A 1 608 809 SO4 SO4 . 
K 4 SO4 A 1 609 810 SO4 SO4 . 
L 4 SO4 A 1 610 819 SO4 SO4 . 
M 4 SO4 A 1 611 820 SO4 SO4 . 
N 2 CA B 1 601 601 CA CA . 
O 3 MAN B 1 602 701 MAN MAN . 
P 3 MAN B 1 603 702 MAN MAN . 
Q 4 SO4 B 1 604 801 SO4 SO4 . 
R 4 SO4 B 1 605 802 SO4 SO4 . 
S 4 SO4 B 1 606 803 SO4 SO4 . 
T 4 SO4 B 1 607 804 SO4 SO4 . 
U 4 SO4 B 1 608 805 SO4 SO4 . 
V 4 SO4 B 1 609 807 SO4 SO4 . 
W 4 SO4 B 1 610 808 SO4 SO4 . 
X 4 SO4 B 1 611 811 SO4 SO4 . 
Y 4 SO4 B 1 612 812 SO4 SO4 . 
Z 4 SO4 B 1 613 813 SO4 SO4 . 
AA 4 SO4 B 1 614 814 SO4 SO4 . 
BA 4 SO4 B 1 615 815 SO4 SO4 . 
CA 4 SO4 B 1 616 816 SO4 SO4 . 
DA 4 SO4 B 1 617 817 SO4 SO4 . 
EA 4 SO4 B 1 618 818 SO4 SO4 . 
FA 4 SO4 B 1 619 821 SO4 SO4 . 
GA 5 HOH A 1 701 5 HOH HOH . 
GA 5 HOH A 2 702 33 HOH HOH . 
GA 5 HOH A 3 703 15 HOH HOH . 
GA 5 HOH A 4 704 31 HOH HOH . 
GA 5 HOH A 5 705 25 HOH HOH . 
HA 5 HOH B 1 701 10 HOH HOH . 
HA 5 HOH B 2 702 9 HOH HOH . 
HA 5 HOH B 3 703 29 HOH HOH . 
HA 5 HOH B 4 704 14 HOH HOH . 
HA 5 HOH B 5 705 1 HOH HOH . 
HA 5 HOH B 6 706 3 HOH HOH . 
HA 5 HOH B 7 707 28 HOH HOH . 
HA 5 HOH B 8 708 6 HOH HOH . 
HA 5 HOH B 9 709 2 HOH HOH . 
HA 5 HOH B 10 710 13 HOH HOH . 
HA 5 HOH B 11 711 4 HOH HOH . 
HA 5 HOH B 12 712 7 HOH HOH . 
HA 5 HOH B 13 713 16 HOH HOH . 
HA 5 HOH B 14 714 22 HOH HOH . 
HA 5 HOH B 15 715 12 HOH HOH . 
HA 5 HOH B 16 716 17 HOH HOH . 
HA 5 HOH B 17 717 23 HOH HOH . 
HA 5 HOH B 18 718 21 HOH HOH . 
HA 5 HOH B 19 719 19 HOH HOH . 
HA 5 HOH B 20 720 8 HOH HOH . 
HA 5 HOH B 21 721 30 HOH HOH . 
HA 5 HOH B 22 722 20 HOH HOH . 
HA 5 HOH B 23 723 27 HOH HOH . 
HA 5 HOH B 24 724 18 HOH HOH . 
HA 5 HOH B 25 725 26 HOH HOH . 
HA 5 HOH B 26 726 24 HOH HOH . 
HA 5 HOH B 27 727 32 HOH HOH . 
HA 5 HOH B 28 728 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . O 3 -5.226 26.231 86.135 1 86.03 0 C1 MAN 602 B 1 
HETATM 2 C C2 MAN . . . O 3 -5.447 27.62 85.496 1 86.4 0 C2 MAN 602 B 1 
HETATM 3 C C3 MAN . . . O 3 -6.054 28.615 86.557 1 84.21 0 C3 MAN 602 B 1 
HETATM 4 C C4 MAN . . . O 3 -6.913 27.958 87.708 1 90.93 0 C4 MAN 602 B 1 
HETATM 5 C C5 MAN . . . O 3 -6.531 26.458 88.054 1 93.77 0 C5 MAN 602 B 1 
HETATM 6 C C6 MAN . . . O 3 -7.629 25.734 88.802 1 83.53 0 C6 MAN 602 B 1 
HETATM 7 O O1 MAN . . . O 3 -4.305 26.496 87.191 1 105.72 0 O1 MAN 602 B 1 
HETATM 8 O O2 MAN . . . O 3 -6.099 27.429 84.205 1 91.54 0 O2 MAN 602 B 1 
HETATM 9 O O3 MAN . . . O 3 -6.863 29.632 85.946 1 74.92 0 O3 MAN 602 B 1 
HETATM 10 O O4 MAN . . . O 3 -6.978 28.748 88.939 1 65.27 0 O4 MAN 602 B 1 
HETATM 11 O O5 MAN . . . O 3 -6.301 25.642 86.87 1 92.79 0 O5 MAN 602 B 1 
HETATM 12 O O6 MAN . . . O 3 -8.778 25.67 87.89 1 72.21 0 O6 MAN 602 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           395 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#