data_7YLE # _model_server_result.job_id MWxMnKEbzh79qhb-xWJKsg _model_server_result.datetime_utc '2025-01-11 03:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7YLE # _exptl.entry_id 7YLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(dimethyl-lambda~4~-sulfanyl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YLE _cell.length_a 74.332 _cell.length_b 74.332 _cell.length_c 87.788 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 55 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 228 A CYS 228 1_555 A SG CYS 234 A CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C5 H12 O2 S' _chem_comp.formula_weight 136.213 _chem_comp.id DQY _chem_comp.mon_nstd_flag . _chem_comp.name '3-(dimethyl-lambda~4~-sulfanyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 S DQY sing 83 n n CM2 S DQY sing 84 n n S C3 DQY sing 85 n n C2 C1 DQY sing 86 n n C1 O1 DQY doub 87 n n C1 O2 DQY sing 88 n n C3 C2 DQY sing 89 n n C2 H2 DQY sing 90 n n C2 H2A DQY sing 91 n n O2 HO2 DQY sing 92 n n C3 H3 DQY sing 93 n n C3 H3A DQY sing 94 n n CM1 HM1 DQY sing 95 n n CM1 HM1A DQY sing 96 n n CM1 HM1B DQY sing 97 n n CM2 HM2 DQY sing 98 n n CM2 HM2A DQY sing 99 n n CM2 HM2B DQY sing 100 n n S HS DQY sing 101 n n # _atom_sites.entry_id 7YLE _atom_sites.fract_transf_matrix[1][1] 0.013453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQY A 1 401 350 DQY DQY . C 3 HOH A 1 501 201 HOH HOH . C 3 HOH A 2 502 181 HOH HOH . C 3 HOH A 3 503 176 HOH HOH . C 3 HOH A 4 504 122 HOH HOH . C 3 HOH A 5 505 77 HOH HOH . C 3 HOH A 6 506 265 HOH HOH . C 3 HOH A 7 507 196 HOH HOH . C 3 HOH A 8 508 113 HOH HOH . C 3 HOH A 9 509 101 HOH HOH . C 3 HOH A 10 510 189 HOH HOH . C 3 HOH A 11 511 52 HOH HOH . C 3 HOH A 12 512 97 HOH HOH . C 3 HOH A 13 513 27 HOH HOH . C 3 HOH A 14 514 226 HOH HOH . C 3 HOH A 15 515 35 HOH HOH . C 3 HOH A 16 516 15 HOH HOH . C 3 HOH A 17 517 7 HOH HOH . C 3 HOH A 18 518 110 HOH HOH . C 3 HOH A 19 519 135 HOH HOH . C 3 HOH A 20 520 13 HOH HOH . C 3 HOH A 21 521 267 HOH HOH . C 3 HOH A 22 522 262 HOH HOH . C 3 HOH A 23 523 66 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 39 HOH HOH . C 3 HOH A 26 526 4 HOH HOH . C 3 HOH A 27 527 9 HOH HOH . C 3 HOH A 28 528 50 HOH HOH . C 3 HOH A 29 529 74 HOH HOH . C 3 HOH A 30 530 78 HOH HOH . C 3 HOH A 31 531 48 HOH HOH . C 3 HOH A 32 532 43 HOH HOH . C 3 HOH A 33 533 49 HOH HOH . C 3 HOH A 34 534 90 HOH HOH . C 3 HOH A 35 535 136 HOH HOH . C 3 HOH A 36 536 23 HOH HOH . C 3 HOH A 37 537 261 HOH HOH . C 3 HOH A 38 538 223 HOH HOH . C 3 HOH A 39 539 5 HOH HOH . C 3 HOH A 40 540 1 HOH HOH . C 3 HOH A 41 541 84 HOH HOH . C 3 HOH A 42 542 41 HOH HOH . C 3 HOH A 43 543 22 HOH HOH . C 3 HOH A 44 544 61 HOH HOH . C 3 HOH A 45 545 58 HOH HOH . C 3 HOH A 46 546 173 HOH HOH . C 3 HOH A 47 547 85 HOH HOH . C 3 HOH A 48 548 67 HOH HOH . C 3 HOH A 49 549 37 HOH HOH . C 3 HOH A 50 550 18 HOH HOH . C 3 HOH A 51 551 2 HOH HOH . C 3 HOH A 52 552 234 HOH HOH . C 3 HOH A 53 553 25 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 12 HOH HOH . C 3 HOH A 56 556 123 HOH HOH . C 3 HOH A 57 557 14 HOH HOH . C 3 HOH A 58 558 220 HOH HOH . C 3 HOH A 59 559 147 HOH HOH . C 3 HOH A 60 560 38 HOH HOH . C 3 HOH A 61 561 56 HOH HOH . C 3 HOH A 62 562 95 HOH HOH . C 3 HOH A 63 563 34 HOH HOH . C 3 HOH A 64 564 116 HOH HOH . C 3 HOH A 65 565 11 HOH HOH . C 3 HOH A 66 566 40 HOH HOH . C 3 HOH A 67 567 143 HOH HOH . C 3 HOH A 68 568 108 HOH HOH . C 3 HOH A 69 569 145 HOH HOH . C 3 HOH A 70 570 112 HOH HOH . C 3 HOH A 71 571 3 HOH HOH . C 3 HOH A 72 572 177 HOH HOH . C 3 HOH A 73 573 164 HOH HOH . C 3 HOH A 74 574 72 HOH HOH . C 3 HOH A 75 575 271 HOH HOH . C 3 HOH A 76 576 243 HOH HOH . C 3 HOH A 77 577 120 HOH HOH . C 3 HOH A 78 578 16 HOH HOH . C 3 HOH A 79 579 114 HOH HOH . C 3 HOH A 80 580 29 HOH HOH . C 3 HOH A 81 581 19 HOH HOH . C 3 HOH A 82 582 94 HOH HOH . C 3 HOH A 83 583 10 HOH HOH . C 3 HOH A 84 584 87 HOH HOH . C 3 HOH A 85 585 132 HOH HOH . C 3 HOH A 86 586 238 HOH HOH . C 3 HOH A 87 587 228 HOH HOH . C 3 HOH A 88 588 248 HOH HOH . C 3 HOH A 89 589 93 HOH HOH . C 3 HOH A 90 590 152 HOH HOH . C 3 HOH A 91 591 200 HOH HOH . C 3 HOH A 92 592 118 HOH HOH . C 3 HOH A 93 593 75 HOH HOH . C 3 HOH A 94 594 126 HOH HOH . C 3 HOH A 95 595 47 HOH HOH . C 3 HOH A 96 596 45 HOH HOH . C 3 HOH A 97 597 8 HOH HOH . C 3 HOH A 98 598 81 HOH HOH . C 3 HOH A 99 599 33 HOH HOH . C 3 HOH A 100 600 28 HOH HOH . C 3 HOH A 101 601 51 HOH HOH . C 3 HOH A 102 602 109 HOH HOH . C 3 HOH A 103 603 139 HOH HOH . C 3 HOH A 104 604 36 HOH HOH . C 3 HOH A 105 605 42 HOH HOH . C 3 HOH A 106 606 186 HOH HOH . C 3 HOH A 107 607 165 HOH HOH . C 3 HOH A 108 608 6 HOH HOH . C 3 HOH A 109 609 125 HOH HOH . C 3 HOH A 110 610 155 HOH HOH . C 3 HOH A 111 611 46 HOH HOH . C 3 HOH A 112 612 124 HOH HOH . C 3 HOH A 113 613 21 HOH HOH . C 3 HOH A 114 614 65 HOH HOH . C 3 HOH A 115 615 232 HOH HOH . C 3 HOH A 116 616 59 HOH HOH . C 3 HOH A 117 617 96 HOH HOH . C 3 HOH A 118 618 20 HOH HOH . C 3 HOH A 119 619 57 HOH HOH . C 3 HOH A 120 620 179 HOH HOH . C 3 HOH A 121 621 218 HOH HOH . C 3 HOH A 122 622 83 HOH HOH . C 3 HOH A 123 623 264 HOH HOH . C 3 HOH A 124 624 30 HOH HOH . C 3 HOH A 125 625 127 HOH HOH . C 3 HOH A 126 626 119 HOH HOH . C 3 HOH A 127 627 17 HOH HOH . C 3 HOH A 128 628 131 HOH HOH . C 3 HOH A 129 629 216 HOH HOH . C 3 HOH A 130 630 188 HOH HOH . C 3 HOH A 131 631 213 HOH HOH . C 3 HOH A 132 632 169 HOH HOH . C 3 HOH A 133 633 162 HOH HOH . C 3 HOH A 134 634 92 HOH HOH . C 3 HOH A 135 635 138 HOH HOH . C 3 HOH A 136 636 44 HOH HOH . C 3 HOH A 137 637 129 HOH HOH . C 3 HOH A 138 638 185 HOH HOH . C 3 HOH A 139 639 68 HOH HOH . C 3 HOH A 140 640 172 HOH HOH . C 3 HOH A 141 641 208 HOH HOH . C 3 HOH A 142 642 26 HOH HOH . C 3 HOH A 143 643 180 HOH HOH . C 3 HOH A 144 644 63 HOH HOH . C 3 HOH A 145 645 259 HOH HOH . C 3 HOH A 146 646 242 HOH HOH . C 3 HOH A 147 647 237 HOH HOH . C 3 HOH A 148 648 142 HOH HOH . C 3 HOH A 149 649 150 HOH HOH . C 3 HOH A 150 650 193 HOH HOH . C 3 HOH A 151 651 255 HOH HOH . C 3 HOH A 152 652 73 HOH HOH . C 3 HOH A 153 653 256 HOH HOH . C 3 HOH A 154 654 86 HOH HOH . C 3 HOH A 155 655 105 HOH HOH . C 3 HOH A 156 656 227 HOH HOH . C 3 HOH A 157 657 254 HOH HOH . C 3 HOH A 158 658 203 HOH HOH . C 3 HOH A 159 659 249 HOH HOH . C 3 HOH A 160 660 197 HOH HOH . C 3 HOH A 161 661 89 HOH HOH . C 3 HOH A 162 662 88 HOH HOH . C 3 HOH A 163 663 134 HOH HOH . C 3 HOH A 164 664 253 HOH HOH . C 3 HOH A 165 665 102 HOH HOH . C 3 HOH A 166 666 69 HOH HOH . C 3 HOH A 167 667 233 HOH HOH . C 3 HOH A 168 668 32 HOH HOH . C 3 HOH A 169 669 91 HOH HOH . C 3 HOH A 170 670 53 HOH HOH . C 3 HOH A 171 671 168 HOH HOH . C 3 HOH A 172 672 104 HOH HOH . C 3 HOH A 173 673 210 HOH HOH . C 3 HOH A 174 674 133 HOH HOH . C 3 HOH A 175 675 121 HOH HOH . C 3 HOH A 176 676 190 HOH HOH . C 3 HOH A 177 677 117 HOH HOH . C 3 HOH A 178 678 222 HOH HOH . C 3 HOH A 179 679 215 HOH HOH . C 3 HOH A 180 680 99 HOH HOH . C 3 HOH A 181 681 137 HOH HOH . C 3 HOH A 182 682 55 HOH HOH . C 3 HOH A 183 683 106 HOH HOH . C 3 HOH A 184 684 151 HOH HOH . C 3 HOH A 185 685 241 HOH HOH . C 3 HOH A 186 686 199 HOH HOH . C 3 HOH A 187 687 212 HOH HOH . C 3 HOH A 188 688 194 HOH HOH . C 3 HOH A 189 689 111 HOH HOH . C 3 HOH A 190 690 204 HOH HOH . C 3 HOH A 191 691 107 HOH HOH . C 3 HOH A 192 692 130 HOH HOH . C 3 HOH A 193 693 174 HOH HOH . C 3 HOH A 194 694 209 HOH HOH . C 3 HOH A 195 695 219 HOH HOH . C 3 HOH A 196 696 257 HOH HOH . C 3 HOH A 197 697 202 HOH HOH . C 3 HOH A 198 698 62 HOH HOH . C 3 HOH A 199 699 273 HOH HOH . C 3 HOH A 200 700 60 HOH HOH . C 3 HOH A 201 701 207 HOH HOH . C 3 HOH A 202 702 258 HOH HOH . C 3 HOH A 203 703 211 HOH HOH . C 3 HOH A 204 704 272 HOH HOH . C 3 HOH A 205 705 270 HOH HOH . C 3 HOH A 206 706 171 HOH HOH . C 3 HOH A 207 707 229 HOH HOH . C 3 HOH A 208 708 250 HOH HOH . C 3 HOH A 209 709 252 HOH HOH . C 3 HOH A 210 710 247 HOH HOH . C 3 HOH A 211 711 230 HOH HOH . C 3 HOH A 212 712 100 HOH HOH . C 3 HOH A 213 713 251 HOH HOH . C 3 HOH A 214 714 146 HOH HOH . C 3 HOH A 215 715 263 HOH HOH . C 3 HOH A 216 716 128 HOH HOH . C 3 HOH A 217 717 268 HOH HOH . C 3 HOH A 218 718 175 HOH HOH . C 3 HOH A 219 719 149 HOH HOH . C 3 HOH A 220 720 71 HOH HOH . C 3 HOH A 221 721 103 HOH HOH . C 3 HOH A 222 722 236 HOH HOH . C 3 HOH A 223 723 64 HOH HOH . C 3 HOH A 224 724 244 HOH HOH . C 3 HOH A 225 725 76 HOH HOH . C 3 HOH A 226 726 115 HOH HOH . C 3 HOH A 227 727 231 HOH HOH . C 3 HOH A 228 728 191 HOH HOH . C 3 HOH A 229 729 163 HOH HOH . C 3 HOH A 230 730 153 HOH HOH . C 3 HOH A 231 731 148 HOH HOH . C 3 HOH A 232 732 187 HOH HOH . C 3 HOH A 233 733 266 HOH HOH . C 3 HOH A 234 734 82 HOH HOH . C 3 HOH A 235 735 80 HOH HOH . C 3 HOH A 236 736 79 HOH HOH . C 3 HOH A 237 737 239 HOH HOH . C 3 HOH A 238 738 192 HOH HOH . C 3 HOH A 239 739 195 HOH HOH . C 3 HOH A 240 740 269 HOH HOH . C 3 HOH A 241 741 167 HOH HOH . C 3 HOH A 242 742 70 HOH HOH . C 3 HOH A 243 743 224 HOH HOH . C 3 HOH A 244 744 98 HOH HOH . C 3 HOH A 245 745 161 HOH HOH . C 3 HOH A 246 746 182 HOH HOH . C 3 HOH A 247 747 31 HOH HOH . C 3 HOH A 248 748 221 HOH HOH . C 3 HOH A 249 749 184 HOH HOH . C 3 HOH A 250 750 156 HOH HOH . C 3 HOH A 251 751 157 HOH HOH . C 3 HOH A 252 752 166 HOH HOH . C 3 HOH A 253 753 160 HOH HOH . C 3 HOH A 254 754 206 HOH HOH . C 3 HOH A 255 755 140 HOH HOH . C 3 HOH A 256 756 205 HOH HOH . C 3 HOH A 257 757 158 HOH HOH . C 3 HOH A 258 758 159 HOH HOH . C 3 HOH A 259 759 154 HOH HOH . C 3 HOH A 260 760 141 HOH HOH . C 3 HOH A 261 761 178 HOH HOH . C 3 HOH A 262 762 214 HOH HOH . C 3 HOH A 263 763 225 HOH HOH . C 3 HOH A 264 764 217 HOH HOH . C 3 HOH A 265 765 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DQY . . . B 2 24.215 7.567 34.121 1 27.29 ? S DQY 401 A 1 HETATM 2 C C1 DQY . . . B 2 23.636 4.386 31.687 1 26.57 ? C1 DQY 401 A 1 HETATM 3 O O1 DQY . . . B 2 24.201 3.757 30.759 1 29.45 ? O1 DQY 401 A 1 HETATM 4 C C2 DQY . . . B 2 24.37 5.494 32.406 1 25.01 ? C2 DQY 401 A 1 HETATM 5 O O2 DQY . . . B 2 22.459 4.093 32.016 1 27.33 ? O2 DQY 401 A 1 HETATM 6 C C3 DQY . . . B 2 23.613 5.977 33.622 1 27.49 ? C3 DQY 401 A 1 HETATM 7 C CM1 DQY . . . B 2 23.546 8.218 35.507 1 24.28 ? CM1 DQY 401 A 1 HETATM 8 C CM2 DQY . . . B 2 24.537 8.824 33.069 1 26.49 ? CM2 DQY 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #