data_7YLF # _model_server_result.job_id p20wwqMxug6IbV6GXq-IXQ _model_server_result.datetime_utc '2024-10-10 18:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ylf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7YLF # _exptl.entry_id 7YLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YLF _cell.length_a 64.299 _cell.length_b 64.299 _cell.length_c 95.782 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -63.854667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 737 1_555 A SG CYS 64 A CYS 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A C TRP 84 A TRP 776 1_555 A N CME 85 A CME 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C CME 85 A CME 777 1_555 A N GLN 86 A GLN 778 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 324 n n S O2 SO4 doub 325 n n S O3 SO4 sing 326 n n S O4 SO4 sing 327 n n # _atom_sites.entry_id 7YLF _atom_sites.fract_transf_matrix[1][1] 0.015552 _atom_sites.fract_transf_matrix[1][2] 0.008979 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 1 SO4 SO4 . C 2 SO4 A 1 902 2 SO4 SO4 . D 2 SO4 A 1 903 3 SO4 SO4 . E 3 GOL A 1 904 1 GOL GOL . F 4 HOH A 1 1001 9 HOH HOH . F 4 HOH A 2 1002 28 HOH HOH . F 4 HOH A 3 1003 18 HOH HOH . F 4 HOH A 4 1004 6 HOH HOH . F 4 HOH A 5 1005 78 HOH HOH . F 4 HOH A 6 1006 35 HOH HOH . F 4 HOH A 7 1007 32 HOH HOH . F 4 HOH A 8 1008 22 HOH HOH . F 4 HOH A 9 1009 11 HOH HOH . F 4 HOH A 10 1010 39 HOH HOH . F 4 HOH A 11 1011 27 HOH HOH . F 4 HOH A 12 1012 56 HOH HOH . F 4 HOH A 13 1013 62 HOH HOH . F 4 HOH A 14 1014 20 HOH HOH . F 4 HOH A 15 1015 47 HOH HOH . F 4 HOH A 16 1016 88 HOH HOH . F 4 HOH A 17 1017 15 HOH HOH . F 4 HOH A 18 1018 72 HOH HOH . F 4 HOH A 19 1019 68 HOH HOH . F 4 HOH A 20 1020 16 HOH HOH . F 4 HOH A 21 1021 8 HOH HOH . F 4 HOH A 22 1022 48 HOH HOH . F 4 HOH A 23 1023 30 HOH HOH . F 4 HOH A 24 1024 52 HOH HOH . F 4 HOH A 25 1025 79 HOH HOH . F 4 HOH A 26 1026 38 HOH HOH . F 4 HOH A 27 1027 43 HOH HOH . F 4 HOH A 28 1028 34 HOH HOH . F 4 HOH A 29 1029 12 HOH HOH . F 4 HOH A 30 1030 29 HOH HOH . F 4 HOH A 31 1031 77 HOH HOH . F 4 HOH A 32 1032 24 HOH HOH . F 4 HOH A 33 1033 25 HOH HOH . F 4 HOH A 34 1034 42 HOH HOH . F 4 HOH A 35 1035 36 HOH HOH . F 4 HOH A 36 1036 50 HOH HOH . F 4 HOH A 37 1037 45 HOH HOH . F 4 HOH A 38 1038 17 HOH HOH . F 4 HOH A 39 1039 40 HOH HOH . F 4 HOH A 40 1040 23 HOH HOH . F 4 HOH A 41 1041 3 HOH HOH . F 4 HOH A 42 1042 46 HOH HOH . F 4 HOH A 43 1043 26 HOH HOH . F 4 HOH A 44 1044 37 HOH HOH . F 4 HOH A 45 1045 5 HOH HOH . F 4 HOH A 46 1046 14 HOH HOH . F 4 HOH A 47 1047 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 46.669 -14.575 -24.863 1 80.82 ? S SO4 901 A 1 HETATM 2 O O1 SO4 . . . B 2 46.346 -15.976 -25.12 1 81.03 ? O1 SO4 901 A 1 HETATM 3 O O2 SO4 . . . B 2 45.916 -13.744 -25.796 1 82.6 ? O2 SO4 901 A 1 HETATM 4 O O3 SO4 . . . B 2 48.1 -14.363 -25.059 1 83.68 ? O3 SO4 901 A 1 HETATM 5 O O4 SO4 . . . B 2 46.312 -14.205 -23.495 1 79.94 ? O4 SO4 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #