data_7YM8 # _model_server_result.job_id ePXgaA5S0PP7QM-XLA0ZDw _model_server_result.datetime_utc '2025-02-17 01:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ym8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7YM8 # _exptl.entry_id 7YM8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 260.375 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Oxymetazoline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YM8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 123 A CYS 99 1_555 B SG CYS 200 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 C SG CYS 44 D CYS 22 1_555 C SG CYS 116 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C16 H24 N2 O' _chem_comp.formula_weight 260.375 _chem_comp.id J5C _chem_comp.mon_nstd_flag . _chem_comp.name Oxymetazoline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C6 J5C sing 171 n n N13 C9 J5C doub 172 n n N13 C12 J5C sing 173 n n C8 C9 J5C sing 174 n n C8 C7 J5C sing 175 n n C9 N10 J5C sing 176 n n C12 C11 J5C sing 177 n n C6 C7 J5C doub 178 n y C6 C5 J5C sing 179 n y C7 C2 J5C sing 180 n y N10 C11 J5C sing 181 n n O15 C5 J5C sing 182 n n C5 C4 J5C doub 183 n y C2 C1 J5C sing 184 n n C2 C3 J5C doub 185 n y C4 C3 J5C sing 186 n y C4 C16 J5C sing 187 n n C19 C16 J5C sing 188 n n C16 C18 J5C sing 189 n n C16 C17 J5C sing 190 n n C1 H1 J5C sing 191 n n C1 H2 J5C sing 192 n n C1 H3 J5C sing 193 n n C3 H4 J5C sing 194 n n C8 H5 J5C sing 195 n n C8 H6 J5C sing 196 n n N10 H7 J5C sing 197 n n C11 H8 J5C sing 198 n n C12 H9 J5C sing 199 n n C14 H11 J5C sing 200 n n C14 H12 J5C sing 201 n n C14 H13 J5C sing 202 n n O15 H14 J5C sing 203 n n C17 H15 J5C sing 204 n n C17 H16 J5C sing 205 n n C17 H17 J5C sing 206 n n C18 H18 J5C sing 207 n n C18 H19 J5C sing 208 n n C18 H20 J5C sing 209 n n C19 H21 J5C sing 210 n n C19 H22 J5C sing 211 n n C19 H23 J5C sing 212 n n C11 H24 J5C sing 213 n n C12 H25 J5C sing 214 n n # _atom_sites.entry_id 7YM8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 J5C A 1 501 501 J5C OXY . E 5 Y01 A 1 502 502 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J5C . . . D 4 139.198 140.025 151.453 1 27.83 ? C1 J5C 501 A 1 HETATM 2 C C2 J5C . . . D 4 139.351 140.924 150.23 1 27.83 ? C2 J5C 501 A 1 HETATM 3 C C3 J5C . . . D 4 139.496 142.287 150.407 1 27.83 ? C3 J5C 501 A 1 HETATM 4 C C4 J5C . . . D 4 139.639 143.163 149.335 1 27.83 ? C4 J5C 501 A 1 HETATM 5 C C5 J5C . . . D 4 139.635 142.608 148.051 1 27.83 ? C5 J5C 501 A 1 HETATM 6 C C6 J5C . . . D 4 139.488 141.249 147.875 1 27.83 ? C6 J5C 501 A 1 HETATM 7 C C7 J5C . . . D 4 139.339 140.393 148.954 1 27.83 ? C7 J5C 501 A 1 HETATM 8 C C8 J5C . . . D 4 139.192 138.888 148.741 1 27.83 ? C8 J5C 501 A 1 HETATM 9 C C9 J5C . . . D 4 137.754 138.404 148.598 1 27.83 ? C9 J5C 501 A 1 HETATM 10 N N10 J5C . . . D 4 136.537 139.216 148.526 1 27.83 ? N10 J5C 501 A 1 HETATM 11 C C11 J5C . . . D 4 135.403 138.345 148.386 1 27.83 ? C11 J5C 501 A 1 HETATM 12 C C12 J5C . . . D 4 135.919 136.948 148.358 1 27.83 ? C12 J5C 501 A 1 HETATM 13 N N13 J5C . . . D 4 137.349 137.002 148.491 1 27.83 ? N13 J5C 501 A 1 HETATM 14 C C14 J5C . . . D 4 139.489 140.725 146.447 1 27.83 ? C14 J5C 501 A 1 HETATM 15 O O15 J5C . . . D 4 139.767 143.347 146.869 1 27.83 ? O15 J5C 501 A 1 HETATM 16 C C16 J5C . . . D 4 139.798 144.675 149.628 1 27.83 ? C16 J5C 501 A 1 HETATM 17 C C17 J5C . . . D 4 138.679 145.51 149.009 1 27.83 ? C17 J5C 501 A 1 HETATM 18 C C18 J5C . . . D 4 139.756 144.954 151.129 1 27.83 ? C18 J5C 501 A 1 HETATM 19 C C19 J5C . . . D 4 141.149 145.19 149.144 1 27.83 ? C19 J5C 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #