data_7YM8 # _model_server_result.job_id DJSvvjE4e6JBInTY5_cbEg _model_server_result.datetime_utc '2024-11-22 23:03:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ym8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 7YM8 # _exptl.entry_id 7YM8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YM8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 123 A CYS 99 1_555 B SG CYS 200 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 C SG CYS 44 D CYS 22 1_555 C SG CYS 116 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 418 n n CBA CAB Y01 sing 419 n n CBA CAN Y01 sing 420 n n CAN CAJ Y01 sing 421 n n CAJ CAO Y01 sing 422 n n CAO CBB Y01 sing 423 n n CBB CAC Y01 sing 424 n n CBB CBE Y01 sing 425 n n CBE CAP Y01 sing 426 n n CBE CBI Y01 sing 427 n n CAP CAQ Y01 sing 428 n n CAQ CBG Y01 sing 429 n n CBG CBI Y01 sing 430 n n CBG CBD Y01 sing 431 n n CBI CAE Y01 sing 432 n n CBI CAU Y01 sing 433 n n CAU CAS Y01 sing 434 n n CAS CBF Y01 sing 435 n n CBF CBD Y01 sing 436 n n CBF CBH Y01 sing 437 n n CBD CAK Y01 sing 438 n n CAK CAI Y01 sing 439 n n CAI CAZ Y01 doub 440 n n CAZ CAV Y01 sing 441 n n CAZ CBH Y01 sing 442 n n CAV CBC Y01 sing 443 n n CBH CAD Y01 sing 444 n n CBH CAT Y01 sing 445 n n CAT CAR Y01 sing 446 n n CAR CBC Y01 sing 447 n n CBC OAW Y01 sing 448 n n OAW CAY Y01 sing 449 n n CAY OAG Y01 doub 450 n n CAY CAM Y01 sing 451 n n CAM CAL Y01 sing 452 n n CAL CAX Y01 sing 453 n n CAX OAH Y01 sing 454 n n CAX OAF Y01 doub 455 n n CAA HAA1 Y01 sing 456 n n CAA HAA2 Y01 sing 457 n n CAA HAA3 Y01 sing 458 n n CBA HBA Y01 sing 459 n n CAB HAB1 Y01 sing 460 n n CAB HAB2 Y01 sing 461 n n CAB HAB3 Y01 sing 462 n n CAN HAN1 Y01 sing 463 n n CAN HAN2 Y01 sing 464 n n CAJ HAJ1 Y01 sing 465 n n CAJ HAJ2 Y01 sing 466 n n CAO HAO1 Y01 sing 467 n n CAO HAO2 Y01 sing 468 n n CBB HBB Y01 sing 469 n n CAC HAC1 Y01 sing 470 n n CAC HAC2 Y01 sing 471 n n CAC HAC3 Y01 sing 472 n n CBE HBE Y01 sing 473 n n CAP HAP1 Y01 sing 474 n n CAP HAP2 Y01 sing 475 n n CAQ HAQ1 Y01 sing 476 n n CAQ HAQ2 Y01 sing 477 n n CBG HBG Y01 sing 478 n n CBD HBD Y01 sing 479 n n CAE HAE1 Y01 sing 480 n n CAE HAE2 Y01 sing 481 n n CAE HAE3 Y01 sing 482 n n CAU HAU1 Y01 sing 483 n n CAU HAU2 Y01 sing 484 n n CAS HAS1 Y01 sing 485 n n CAS HAS2 Y01 sing 486 n n CBF HBF Y01 sing 487 n n CAK HAK1 Y01 sing 488 n n CAK HAK2 Y01 sing 489 n n CAI HAI Y01 sing 490 n n CAV HAV1 Y01 sing 491 n n CAV HAV2 Y01 sing 492 n n CBC HBC Y01 sing 493 n n CAD HAD1 Y01 sing 494 n n CAD HAD2 Y01 sing 495 n n CAD HAD3 Y01 sing 496 n n CAT HAT1 Y01 sing 497 n n CAT HAT2 Y01 sing 498 n n CAR HAR1 Y01 sing 499 n n CAR HAR2 Y01 sing 500 n n CAM HAM1 Y01 sing 501 n n CAM HAM2 Y01 sing 502 n n CAL HAL1 Y01 sing 503 n n CAL HAL2 Y01 sing 504 n n OAH HAH Y01 sing 505 n n # _atom_sites.entry_id 7YM8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 J5C A 1 501 501 J5C OXY . E 5 Y01 A 1 502 502 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 144.56 147.38 136.689 1 34.45 ? CAA Y01 502 A 1 HETATM 2 C CBA Y01 . . . E 5 144.256 147.552 135.211 1 34.45 ? CBA Y01 502 A 1 HETATM 3 C CAB Y01 . . . E 5 142.767 147.755 135.004 1 34.45 ? CAB Y01 502 A 1 HETATM 4 C CAN Y01 . . . E 5 144.774 146.37 134.398 1 34.45 ? CAN Y01 502 A 1 HETATM 5 C CAJ Y01 . . . E 5 144.802 146.556 132.896 1 34.45 ? CAJ Y01 502 A 1 HETATM 6 C CAO Y01 . . . E 5 145.639 145.527 132.154 1 34.45 ? CAO Y01 502 A 1 HETATM 7 C CBB Y01 . . . E 5 147.151 145.81 132.078 1 34.45 ? CBB Y01 502 A 1 HETATM 8 C CAC Y01 . . . E 5 147.893 145.077 133.196 1 34.45 ? CAC Y01 502 A 1 HETATM 9 C CBE Y01 . . . E 5 147.697 145.505 130.667 1 34.45 ? CBE Y01 502 A 1 HETATM 10 C CAP Y01 . . . E 5 146.726 145.982 129.55 1 34.45 ? CAP Y01 502 A 1 HETATM 11 C CAQ Y01 . . . E 5 147.585 146.554 128.409 1 34.45 ? CAQ Y01 502 A 1 HETATM 12 C CBG Y01 . . . E 5 148.946 145.929 128.683 1 34.45 ? CBG Y01 502 A 1 HETATM 13 C CBI Y01 . . . E 5 149.089 146.056 130.214 1 34.45 ? CBI Y01 502 A 1 HETATM 14 C CAE Y01 . . . E 5 149.232 147.524 130.658 1 34.45 ? CAE Y01 502 A 1 HETATM 15 C CAU Y01 . . . E 5 150.331 145.243 130.601 1 34.45 ? CAU Y01 502 A 1 HETATM 16 C CAS Y01 . . . E 5 151.586 145.698 129.85 1 34.45 ? CAS Y01 502 A 1 HETATM 17 C CBF Y01 . . . E 5 151.401 145.62 128.329 1 34.45 ? CBF Y01 502 A 1 HETATM 18 C CBD Y01 . . . E 5 150.154 146.409 127.887 1 34.45 ? CBD Y01 502 A 1 HETATM 19 C CAK Y01 . . . E 5 149.909 146.28 126.382 1 34.45 ? CAK Y01 502 A 1 HETATM 20 C CAI Y01 . . . E 5 151.171 146.269 125.575 1 34.45 ? CAI Y01 502 A 1 HETATM 21 C CAZ Y01 . . . E 5 152.341 145.888 126.06 1 34.45 ? CAZ Y01 502 A 1 HETATM 22 C CAV Y01 . . . E 5 153.338 145.145 125.187 1 34.45 ? CAV Y01 502 A 1 HETATM 23 C CBH Y01 . . . E 5 152.666 146.053 127.54 1 34.45 ? CBH Y01 502 A 1 HETATM 24 C CAD Y01 . . . E 5 153.019 147.525 127.84 1 34.45 ? CAD Y01 502 A 1 HETATM 25 C CAT Y01 . . . E 5 153.846 145.123 127.89 1 34.45 ? CAT Y01 502 A 1 HETATM 26 C CAR Y01 . . . E 5 155.078 145.339 127.005 1 34.45 ? CAR Y01 502 A 1 HETATM 27 C CBC Y01 . . . E 5 154.79 145.419 125.523 1 34.45 ? CBC Y01 502 A 1 HETATM 28 O OAW Y01 . . . E 5 155.094 146.769 125.055 1 34.45 ? OAW Y01 502 A 1 HETATM 29 C CAY Y01 . . . E 5 156.365 147.118 124.819 1 34.45 ? CAY Y01 502 A 1 HETATM 30 O OAG Y01 . . . E 5 156.81 148.195 125.094 1 34.45 ? OAG Y01 502 A 1 HETATM 31 C CAM Y01 . . . E 5 157.149 146.053 124.082 1 34.45 ? CAM Y01 502 A 1 HETATM 32 C CAL Y01 . . . E 5 157.834 146.448 122.789 1 34.45 ? CAL Y01 502 A 1 HETATM 33 C CAX Y01 . . . E 5 156.91 146.809 121.638 1 34.45 ? CAX Y01 502 A 1 HETATM 34 O OAH Y01 . . . E 5 157.423 147.22 120.579 1 34.45 ? OAH Y01 502 A 1 HETATM 35 O OAF Y01 . . . E 5 155.683 146.668 121.798 1 34.45 ? OAF Y01 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #