data_7YMK
#
_model_server_result.job_id            kgTGsRA3s16WCi0t-JiXDQ 
_model_server_result.datetime_utc      '2025-01-10 07:57:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ymk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    7YMK 
#
_exptl.entry_id    7YMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YMK 
_cell.length_a            52.481 
_cell.length_b            101.48 
_cell.length_c            195.807 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,H,I 1 1 
C,D,F,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 313 n n 
C1 C2 PEG sing 314 n n 
C1 H11 PEG sing 315 n n 
C1 H12 PEG sing 316 n n 
O1 HO1 PEG sing 317 n n 
C2 O2 PEG sing 318 n n 
C2 H21 PEG sing 319 n n 
C2 H22 PEG sing 320 n n 
O2 C3 PEG sing 321 n n 
C3 C4 PEG sing 322 n n 
C3 H31 PEG sing 323 n n 
C3 H32 PEG sing 324 n n 
C4 O4 PEG sing 325 n n 
C4 H41 PEG sing 326 n n 
C4 H42 PEG sing 327 n n 
O4 HO4 PEG sing 328 n n 
#
_atom_sites.entry_id                     7YMK 
_atom_sites.fract_transf_matrix[1][1]    0.019055 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009854 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005107 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PEG A 1 601 601 PEG PEG . 
F 4 IX0 B 1 601 601 IX0 DRG . 
G 5 SO4 B 1 602 602 SO4 SO4 . 
H 6 HOH A 1 701 69 HOH HOH . 
H 6 HOH A 2 702 152 HOH HOH . 
H 6 HOH A 3 703 118 HOH HOH . 
H 6 HOH A 4 704 61 HOH HOH . 
H 6 HOH A 5 705 62 HOH HOH . 
H 6 HOH A 6 706 65 HOH HOH . 
H 6 HOH A 7 707 28 HOH HOH . 
H 6 HOH A 8 708 90 HOH HOH . 
H 6 HOH A 9 709 139 HOH HOH . 
H 6 HOH A 10 710 16 HOH HOH . 
H 6 HOH A 11 711 30 HOH HOH . 
H 6 HOH A 12 712 36 HOH HOH . 
H 6 HOH A 13 713 46 HOH HOH . 
H 6 HOH A 14 714 109 HOH HOH . 
H 6 HOH A 15 715 116 HOH HOH . 
H 6 HOH A 16 716 43 HOH HOH . 
H 6 HOH A 17 717 71 HOH HOH . 
H 6 HOH A 18 718 76 HOH HOH . 
H 6 HOH A 19 719 117 HOH HOH . 
H 6 HOH A 20 720 68 HOH HOH . 
H 6 HOH A 21 721 22 HOH HOH . 
H 6 HOH A 22 722 7 HOH HOH . 
H 6 HOH A 23 723 122 HOH HOH . 
H 6 HOH A 24 724 84 HOH HOH . 
H 6 HOH A 25 725 104 HOH HOH . 
H 6 HOH A 26 726 149 HOH HOH . 
H 6 HOH A 27 727 3 HOH HOH . 
H 6 HOH A 28 728 66 HOH HOH . 
H 6 HOH A 29 729 64 HOH HOH . 
H 6 HOH A 30 730 56 HOH HOH . 
H 6 HOH A 31 731 125 HOH HOH . 
H 6 HOH A 32 732 27 HOH HOH . 
H 6 HOH A 33 733 5 HOH HOH . 
H 6 HOH A 34 734 70 HOH HOH . 
H 6 HOH A 35 735 148 HOH HOH . 
H 6 HOH A 36 736 37 HOH HOH . 
H 6 HOH A 37 737 63 HOH HOH . 
H 6 HOH A 38 738 24 HOH HOH . 
H 6 HOH A 39 739 72 HOH HOH . 
H 6 HOH A 40 740 55 HOH HOH . 
H 6 HOH A 41 741 153 HOH HOH . 
H 6 HOH A 42 742 4 HOH HOH . 
H 6 HOH A 43 743 14 HOH HOH . 
H 6 HOH A 44 744 42 HOH HOH . 
H 6 HOH A 45 745 150 HOH HOH . 
H 6 HOH A 46 746 6 HOH HOH . 
H 6 HOH A 47 747 60 HOH HOH . 
H 6 HOH A 48 748 138 HOH HOH . 
H 6 HOH A 49 749 38 HOH HOH . 
H 6 HOH A 50 750 26 HOH HOH . 
H 6 HOH A 51 751 29 HOH HOH . 
H 6 HOH A 52 752 74 HOH HOH . 
H 6 HOH A 53 753 1 HOH HOH . 
H 6 HOH A 54 754 75 HOH HOH . 
H 6 HOH A 55 755 145 HOH HOH . 
H 6 HOH A 56 756 59 HOH HOH . 
H 6 HOH A 57 757 57 HOH HOH . 
H 6 HOH A 58 758 17 HOH HOH . 
H 6 HOH A 59 759 48 HOH HOH . 
H 6 HOH A 60 760 15 HOH HOH . 
H 6 HOH A 61 761 32 HOH HOH . 
H 6 HOH A 62 762 119 HOH HOH . 
H 6 HOH A 63 763 93 HOH HOH . 
H 6 HOH A 64 764 11 HOH HOH . 
H 6 HOH A 65 765 18 HOH HOH . 
H 6 HOH A 66 766 135 HOH HOH . 
H 6 HOH A 67 767 144 HOH HOH . 
H 6 HOH A 68 768 10 HOH HOH . 
H 6 HOH A 69 769 108 HOH HOH . 
H 6 HOH A 70 770 124 HOH HOH . 
H 6 HOH A 71 771 73 HOH HOH . 
H 6 HOH A 72 772 58 HOH HOH . 
H 6 HOH A 73 773 77 HOH HOH . 
H 6 HOH A 74 774 87 HOH HOH . 
H 6 HOH A 75 775 121 HOH HOH . 
H 6 HOH A 76 776 34 HOH HOH . 
H 6 HOH A 77 777 91 HOH HOH . 
H 6 HOH A 78 778 141 HOH HOH . 
H 6 HOH A 79 779 50 HOH HOH . 
H 6 HOH A 80 780 140 HOH HOH . 
H 6 HOH A 81 781 85 HOH HOH . 
H 6 HOH A 82 782 47 HOH HOH . 
H 6 HOH A 83 783 53 HOH HOH . 
H 6 HOH A 84 784 54 HOH HOH . 
H 6 HOH A 85 785 143 HOH HOH . 
H 6 HOH A 86 786 151 HOH HOH . 
H 6 HOH A 87 787 142 HOH HOH . 
H 6 HOH A 88 788 86 HOH HOH . 
I 6 HOH C 1 701 111 HOH HOH . 
I 6 HOH C 2 702 110 HOH HOH . 
I 6 HOH C 3 703 67 HOH HOH . 
J 6 HOH B 1 701 130 HOH HOH . 
J 6 HOH B 2 702 126 HOH HOH . 
J 6 HOH B 3 703 102 HOH HOH . 
J 6 HOH B 4 704 79 HOH HOH . 
J 6 HOH B 5 705 136 HOH HOH . 
J 6 HOH B 6 706 120 HOH HOH . 
J 6 HOH B 7 707 49 HOH HOH . 
J 6 HOH B 8 708 31 HOH HOH . 
J 6 HOH B 9 709 41 HOH HOH . 
J 6 HOH B 10 710 9 HOH HOH . 
J 6 HOH B 11 711 82 HOH HOH . 
J 6 HOH B 12 712 21 HOH HOH . 
J 6 HOH B 13 713 99 HOH HOH . 
J 6 HOH B 14 714 13 HOH HOH . 
J 6 HOH B 15 715 92 HOH HOH . 
J 6 HOH B 16 716 101 HOH HOH . 
J 6 HOH B 17 717 23 HOH HOH . 
J 6 HOH B 18 718 45 HOH HOH . 
J 6 HOH B 19 719 131 HOH HOH . 
J 6 HOH B 20 720 2 HOH HOH . 
J 6 HOH B 21 721 12 HOH HOH . 
J 6 HOH B 22 722 39 HOH HOH . 
J 6 HOH B 23 723 33 HOH HOH . 
J 6 HOH B 24 724 19 HOH HOH . 
J 6 HOH B 25 725 97 HOH HOH . 
J 6 HOH B 26 726 40 HOH HOH . 
J 6 HOH B 27 727 98 HOH HOH . 
J 6 HOH B 28 728 133 HOH HOH . 
J 6 HOH B 29 729 80 HOH HOH . 
J 6 HOH B 30 730 89 HOH HOH . 
J 6 HOH B 31 731 137 HOH HOH . 
J 6 HOH B 32 732 20 HOH HOH . 
J 6 HOH B 33 733 81 HOH HOH . 
J 6 HOH B 34 734 78 HOH HOH . 
J 6 HOH B 35 735 51 HOH HOH . 
J 6 HOH B 36 736 128 HOH HOH . 
J 6 HOH B 37 737 35 HOH HOH . 
J 6 HOH B 38 738 8 HOH HOH . 
J 6 HOH B 39 739 146 HOH HOH . 
J 6 HOH B 40 740 88 HOH HOH . 
J 6 HOH B 41 741 105 HOH HOH . 
J 6 HOH B 42 742 113 HOH HOH . 
J 6 HOH B 43 743 44 HOH HOH . 
J 6 HOH B 44 744 129 HOH HOH . 
J 6 HOH B 45 745 106 HOH HOH . 
J 6 HOH B 46 746 25 HOH HOH . 
J 6 HOH B 47 747 107 HOH HOH . 
J 6 HOH B 48 748 94 HOH HOH . 
J 6 HOH B 49 749 52 HOH HOH . 
J 6 HOH B 50 750 114 HOH HOH . 
J 6 HOH B 51 751 115 HOH HOH . 
J 6 HOH B 52 752 147 HOH HOH . 
J 6 HOH B 53 753 83 HOH HOH . 
J 6 HOH B 54 754 103 HOH HOH . 
J 6 HOH B 55 755 134 HOH HOH . 
J 6 HOH B 56 756 112 HOH HOH . 
J 6 HOH B 57 757 100 HOH HOH . 
J 6 HOH B 58 758 127 HOH HOH . 
J 6 HOH B 59 759 132 HOH HOH . 
J 6 HOH B 60 760 123 HOH HOH . 
K 6 HOH D 1 701 96 HOH HOH . 
K 6 HOH D 2 702 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . E 3 0.388 11.152 8.978 1 51.22 ? C1 PEG 601 A 1 
HETATM 2 O O1 PEG . . . E 3 -0.205 12.439 8.682 1 47.99 ? O1 PEG 601 A 1 
HETATM 3 C C2 PEG . . . E 3 0.89 11.085 10.406 1 57.62 ? C2 PEG 601 A 1 
HETATM 4 O O2 PEG . . . E 3 1.251 9.751 10.787 1 61.07 ? O2 PEG 601 A 1 
HETATM 5 C C3 PEG . . . E 3 1.474 9.636 12.197 1 62.93 ? C3 PEG 601 A 1 
HETATM 6 C C4 PEG . . . E 3 2.21 8.356 12.55 1 65.93 ? C4 PEG 601 A 1 
HETATM 7 O O4 PEG . . . E 3 1.951 7.93 13.884 1 57.71 ? O4 PEG 601 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#