data_7YMK # _model_server_result.job_id j-SKaKoI79pD9PuUbWfFMA _model_server_result.datetime_utc '2025-01-10 08:11:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ymk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7YMK # _exptl.entry_id 7YMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 614.632 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-((1S,4S,6R)-3-(4-hydroxyphenyl)-6-(N-(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)sulfamoyl)-7-oxabicyclo[2.2.1]hept-2-en-2-yl)phenyl)-3-methylbut-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YMK _cell.length_a 52.481 _cell.length_b 101.48 _cell.length_c 195.807 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,H,I 1 1 C,D,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H29 F3 N2 O6 S' _chem_comp.formula_weight 614.632 _chem_comp.id IX0 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-((1S,4S,6R)-3-(4-hydroxyphenyl)-6-(N-(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)sulfamoyl)-7-oxabicyclo[2.2.1]hept-2-en-2-yl)phenyl)-3-methylbut-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FBC CAZ IX0 sing 173 n n CAY CAZ IX0 sing 174 n n CAY NAX IX0 sing 175 n n CAZ FBA IX0 sing 176 n n CAZ FBB IX0 sing 177 n n OAV SAU IX0 doub 178 n n OAW SAU IX0 doub 179 n n SAU NAX IX0 sing 180 n n SAU CAS IX0 sing 181 n n NAX CBD IX0 sing 182 n n CBI CBD IX0 doub 183 n y CBI CBH IX0 sing 184 n y CBD CBE IX0 sing 185 n y CAR CAS IX0 sing 186 n n CAR CAQ IX0 sing 187 n n CAS CAN IX0 sing 188 n n CBH CBG IX0 doub 189 n y OAT CAN IX0 sing 190 n n OAT CAQ IX0 sing 191 n n CBE CBF IX0 doub 192 n y CAN CAO IX0 sing 193 n n CAQ CAP IX0 sing 194 n n CBG CBF IX0 sing 195 n y CBG OBJ IX0 sing 196 n n CAO CAP IX0 doub 197 n n CAO CAK IX0 sing 198 n n CAP CBK IX0 sing 199 n n CBP CBK IX0 doub 200 n y CBP CBO IX0 sing 201 n y CAK CAJ IX0 doub 202 n y CAK CAL IX0 sing 203 n y CBK CBL IX0 sing 204 n y CAJ CAI IX0 sing 205 n y CAL CAM IX0 doub 206 n y CBO CBN IX0 doub 207 n y CAI CAH IX0 doub 208 n y OAE CAA IX0 doub 209 n n CBL CBM IX0 doub 210 n y CAM CAH IX0 sing 211 n y CAH NAF IX0 sing 212 n n CBN CBM IX0 sing 213 n y CBN OBQ IX0 sing 214 n n CAG CAC IX0 sing 215 n n CAA NAF IX0 sing 216 n n CAA CAB IX0 sing 217 n n CAC CAB IX0 doub 218 n n CAC CAD IX0 sing 219 n n CAD H1 IX0 sing 220 n n CAD H2 IX0 sing 221 n n CAD H3 IX0 sing 222 n n CAG H4 IX0 sing 223 n n CAG H5 IX0 sing 224 n n CAG H6 IX0 sing 225 n n CAB H7 IX0 sing 226 n n NAF H8 IX0 sing 227 n n CAM H9 IX0 sing 228 n n CAL H10 IX0 sing 229 n n CAI H11 IX0 sing 230 n n CAJ H12 IX0 sing 231 n n CBL H15 IX0 sing 232 n n CBM H16 IX0 sing 233 n n OBQ H17 IX0 sing 234 n n CBO H18 IX0 sing 235 n n CBP H19 IX0 sing 236 n n CAQ H20 IX0 sing 237 n n CAR H21 IX0 sing 238 n n CAR H22 IX0 sing 239 n n CAN H23 IX0 sing 240 n n CAS H24 IX0 sing 241 n n CAY H25 IX0 sing 242 n n CAY H26 IX0 sing 243 n n CBE H27 IX0 sing 244 n n CBF H28 IX0 sing 245 n n OBJ H29 IX0 sing 246 n n CBH H30 IX0 sing 247 n n CBI H31 IX0 sing 248 n n # _atom_sites.entry_id 7YMK _atom_sites.fract_transf_matrix[1][1] 0.019055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PEG A 1 601 601 PEG PEG . F 4 IX0 B 1 601 601 IX0 DRG . G 5 SO4 B 1 602 602 SO4 SO4 . H 6 HOH A 1 701 69 HOH HOH . H 6 HOH A 2 702 152 HOH HOH . H 6 HOH A 3 703 118 HOH HOH . H 6 HOH A 4 704 61 HOH HOH . H 6 HOH A 5 705 62 HOH HOH . H 6 HOH A 6 706 65 HOH HOH . H 6 HOH A 7 707 28 HOH HOH . H 6 HOH A 8 708 90 HOH HOH . H 6 HOH A 9 709 139 HOH HOH . H 6 HOH A 10 710 16 HOH HOH . H 6 HOH A 11 711 30 HOH HOH . H 6 HOH A 12 712 36 HOH HOH . H 6 HOH A 13 713 46 HOH HOH . H 6 HOH A 14 714 109 HOH HOH . H 6 HOH A 15 715 116 HOH HOH . H 6 HOH A 16 716 43 HOH HOH . H 6 HOH A 17 717 71 HOH HOH . H 6 HOH A 18 718 76 HOH HOH . H 6 HOH A 19 719 117 HOH HOH . H 6 HOH A 20 720 68 HOH HOH . H 6 HOH A 21 721 22 HOH HOH . H 6 HOH A 22 722 7 HOH HOH . H 6 HOH A 23 723 122 HOH HOH . H 6 HOH A 24 724 84 HOH HOH . H 6 HOH A 25 725 104 HOH HOH . H 6 HOH A 26 726 149 HOH HOH . H 6 HOH A 27 727 3 HOH HOH . H 6 HOH A 28 728 66 HOH HOH . H 6 HOH A 29 729 64 HOH HOH . H 6 HOH A 30 730 56 HOH HOH . H 6 HOH A 31 731 125 HOH HOH . H 6 HOH A 32 732 27 HOH HOH . H 6 HOH A 33 733 5 HOH HOH . H 6 HOH A 34 734 70 HOH HOH . H 6 HOH A 35 735 148 HOH HOH . H 6 HOH A 36 736 37 HOH HOH . H 6 HOH A 37 737 63 HOH HOH . H 6 HOH A 38 738 24 HOH HOH . H 6 HOH A 39 739 72 HOH HOH . H 6 HOH A 40 740 55 HOH HOH . H 6 HOH A 41 741 153 HOH HOH . H 6 HOH A 42 742 4 HOH HOH . H 6 HOH A 43 743 14 HOH HOH . H 6 HOH A 44 744 42 HOH HOH . H 6 HOH A 45 745 150 HOH HOH . H 6 HOH A 46 746 6 HOH HOH . H 6 HOH A 47 747 60 HOH HOH . H 6 HOH A 48 748 138 HOH HOH . H 6 HOH A 49 749 38 HOH HOH . H 6 HOH A 50 750 26 HOH HOH . H 6 HOH A 51 751 29 HOH HOH . H 6 HOH A 52 752 74 HOH HOH . H 6 HOH A 53 753 1 HOH HOH . H 6 HOH A 54 754 75 HOH HOH . H 6 HOH A 55 755 145 HOH HOH . H 6 HOH A 56 756 59 HOH HOH . H 6 HOH A 57 757 57 HOH HOH . H 6 HOH A 58 758 17 HOH HOH . H 6 HOH A 59 759 48 HOH HOH . H 6 HOH A 60 760 15 HOH HOH . H 6 HOH A 61 761 32 HOH HOH . H 6 HOH A 62 762 119 HOH HOH . H 6 HOH A 63 763 93 HOH HOH . H 6 HOH A 64 764 11 HOH HOH . H 6 HOH A 65 765 18 HOH HOH . H 6 HOH A 66 766 135 HOH HOH . H 6 HOH A 67 767 144 HOH HOH . H 6 HOH A 68 768 10 HOH HOH . H 6 HOH A 69 769 108 HOH HOH . H 6 HOH A 70 770 124 HOH HOH . H 6 HOH A 71 771 73 HOH HOH . H 6 HOH A 72 772 58 HOH HOH . H 6 HOH A 73 773 77 HOH HOH . H 6 HOH A 74 774 87 HOH HOH . H 6 HOH A 75 775 121 HOH HOH . H 6 HOH A 76 776 34 HOH HOH . H 6 HOH A 77 777 91 HOH HOH . H 6 HOH A 78 778 141 HOH HOH . H 6 HOH A 79 779 50 HOH HOH . H 6 HOH A 80 780 140 HOH HOH . H 6 HOH A 81 781 85 HOH HOH . H 6 HOH A 82 782 47 HOH HOH . H 6 HOH A 83 783 53 HOH HOH . H 6 HOH A 84 784 54 HOH HOH . H 6 HOH A 85 785 143 HOH HOH . H 6 HOH A 86 786 151 HOH HOH . H 6 HOH A 87 787 142 HOH HOH . H 6 HOH A 88 788 86 HOH HOH . I 6 HOH C 1 701 111 HOH HOH . I 6 HOH C 2 702 110 HOH HOH . I 6 HOH C 3 703 67 HOH HOH . J 6 HOH B 1 701 130 HOH HOH . J 6 HOH B 2 702 126 HOH HOH . J 6 HOH B 3 703 102 HOH HOH . J 6 HOH B 4 704 79 HOH HOH . J 6 HOH B 5 705 136 HOH HOH . J 6 HOH B 6 706 120 HOH HOH . J 6 HOH B 7 707 49 HOH HOH . J 6 HOH B 8 708 31 HOH HOH . J 6 HOH B 9 709 41 HOH HOH . J 6 HOH B 10 710 9 HOH HOH . J 6 HOH B 11 711 82 HOH HOH . J 6 HOH B 12 712 21 HOH HOH . J 6 HOH B 13 713 99 HOH HOH . J 6 HOH B 14 714 13 HOH HOH . J 6 HOH B 15 715 92 HOH HOH . J 6 HOH B 16 716 101 HOH HOH . J 6 HOH B 17 717 23 HOH HOH . J 6 HOH B 18 718 45 HOH HOH . J 6 HOH B 19 719 131 HOH HOH . J 6 HOH B 20 720 2 HOH HOH . J 6 HOH B 21 721 12 HOH HOH . J 6 HOH B 22 722 39 HOH HOH . J 6 HOH B 23 723 33 HOH HOH . J 6 HOH B 24 724 19 HOH HOH . J 6 HOH B 25 725 97 HOH HOH . J 6 HOH B 26 726 40 HOH HOH . J 6 HOH B 27 727 98 HOH HOH . J 6 HOH B 28 728 133 HOH HOH . J 6 HOH B 29 729 80 HOH HOH . J 6 HOH B 30 730 89 HOH HOH . J 6 HOH B 31 731 137 HOH HOH . J 6 HOH B 32 732 20 HOH HOH . J 6 HOH B 33 733 81 HOH HOH . J 6 HOH B 34 734 78 HOH HOH . J 6 HOH B 35 735 51 HOH HOH . J 6 HOH B 36 736 128 HOH HOH . J 6 HOH B 37 737 35 HOH HOH . J 6 HOH B 38 738 8 HOH HOH . J 6 HOH B 39 739 146 HOH HOH . J 6 HOH B 40 740 88 HOH HOH . J 6 HOH B 41 741 105 HOH HOH . J 6 HOH B 42 742 113 HOH HOH . J 6 HOH B 43 743 44 HOH HOH . J 6 HOH B 44 744 129 HOH HOH . J 6 HOH B 45 745 106 HOH HOH . J 6 HOH B 46 746 25 HOH HOH . J 6 HOH B 47 747 107 HOH HOH . J 6 HOH B 48 748 94 HOH HOH . J 6 HOH B 49 749 52 HOH HOH . J 6 HOH B 50 750 114 HOH HOH . J 6 HOH B 51 751 115 HOH HOH . J 6 HOH B 52 752 147 HOH HOH . J 6 HOH B 53 753 83 HOH HOH . J 6 HOH B 54 754 103 HOH HOH . J 6 HOH B 55 755 134 HOH HOH . J 6 HOH B 56 756 112 HOH HOH . J 6 HOH B 57 757 100 HOH HOH . J 6 HOH B 58 758 127 HOH HOH . J 6 HOH B 59 759 132 HOH HOH . J 6 HOH B 60 760 123 HOH HOH . K 6 HOH D 1 701 96 HOH HOH . K 6 HOH D 2 702 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD IX0 . . . F 4 18.755 5.353 38.437 1 72.54 ? CAD IX0 601 B 1 HETATM 2 C CAC IX0 . . . F 4 19.533 5.811 37.192 1 68.79 ? CAC IX0 601 B 1 HETATM 3 C CAG IX0 . . . F 4 19.62 4.872 35.976 1 69.2 ? CAG IX0 601 B 1 HETATM 4 C CAB IX0 . . . F 4 20.217 7.187 37.2 1 71.2 ? CAB IX0 601 B 1 HETATM 5 C CAA IX0 . . . F 4 21.063 7.769 35.998 1 70.29 ? CAA IX0 601 B 1 HETATM 6 O OAE IX0 . . . F 4 21.283 7.197 34.941 1 76.74 ? OAE IX0 601 B 1 HETATM 7 N NAF IX0 . . . F 4 21.587 8.942 36.275 1 64.89 ? NAF IX0 601 B 1 HETATM 8 C CAH IX0 . . . F 4 22.193 9.694 35.369 1 59.72 ? CAH IX0 601 B 1 HETATM 9 C CAM IX0 . . . F 4 21.487 10.891 35.154 1 54.83 ? CAM IX0 601 B 1 HETATM 10 C CAL IX0 . . . F 4 21.957 11.866 34.294 1 53.95 ? CAL IX0 601 B 1 HETATM 11 C CAI IX0 . . . F 4 23.397 9.44 34.705 1 52.37 ? CAI IX0 601 B 1 HETATM 12 C CAJ IX0 . . . F 4 23.857 10.434 33.836 1 50.83 ? CAJ IX0 601 B 1 HETATM 13 C CAK IX0 . . . F 4 23.157 11.644 33.65 1 49.35 ? CAK IX0 601 B 1 HETATM 14 C CAO IX0 . . . F 4 23.555 12.554 32.791 1 48.24 ? CAO IX0 601 B 1 HETATM 15 C CAP IX0 . . . F 4 23.529 13.902 32.799 1 44.88 ? CAP IX0 601 B 1 HETATM 16 C CBK IX0 . . . F 4 23.342 14.804 33.765 1 41.26 ? CBK IX0 601 B 1 HETATM 17 C CBL IX0 . . . F 4 23.596 14.55 35.111 1 41.54 ? CBL IX0 601 B 1 HETATM 18 C CBM IX0 . . . F 4 23.421 15.556 36.058 1 36.94 ? CBM IX0 601 B 1 HETATM 19 C CBN IX0 . . . F 4 22.987 16.803 35.673 1 35.7 ? CBN IX0 601 B 1 HETATM 20 O OBQ IX0 . . . F 4 22.82 17.779 36.581 1 38.17 ? OBQ IX0 601 B 1 HETATM 21 C CBO IX0 . . . F 4 22.713 17.066 34.344 1 35.8 ? CBO IX0 601 B 1 HETATM 22 C CBP IX0 . . . F 4 22.917 16.087 33.409 1 35.85 ? CBP IX0 601 B 1 HETATM 23 C CAQ IX0 . . . F 4 23.9 14.304 31.467 1 49.76 ? CAQ IX0 601 B 1 HETATM 24 C CAR IX0 . . . F 4 22.714 14.158 30.581 1 48.75 ? CAR IX0 601 B 1 HETATM 25 O OAT IX0 . . . F 4 24.672 13.193 30.976 1 51.56 ? OAT IX0 601 B 1 HETATM 26 C CAN IX0 . . . F 4 23.755 12.205 31.456 1 51.31 ? CAN IX0 601 B 1 HETATM 27 C CAS IX0 . . . F 4 22.502 12.637 30.773 1 51.33 ? CAS IX0 601 B 1 HETATM 28 S SAU IX0 . . . F 4 22.479 11.914 29.024 1 56.46 ? SAU IX0 601 B 1 HETATM 29 O OAV IX0 . . . F 4 23.706 12.395 28.22 1 57.11 ? OAV IX0 601 B 1 HETATM 30 O OAW IX0 . . . F 4 21.166 12.429 28.428 1 56.89 ? OAW IX0 601 B 1 HETATM 31 N NAX IX0 . . . F 4 22.351 10.305 29.028 1 61.93 ? NAX IX0 601 B 1 HETATM 32 C CAY IX0 . . . F 4 22.763 9.678 27.776 1 69.53 ? CAY IX0 601 B 1 HETATM 33 C CAZ IX0 . . . F 4 23.549 8.399 27.996 1 75.15 ? CAZ IX0 601 B 1 HETATM 34 F FBB IX0 . . . F 4 24.657 8.592 28.736 1 82.31 ? FBB IX0 601 B 1 HETATM 35 F FBC IX0 . . . F 4 23.875 8.041 26.868 1 73.77 ? FBC IX0 601 B 1 HETATM 36 F FBA IX0 . . . F 4 22.749 7.46 28.576 1 94.77 ? FBA IX0 601 B 1 HETATM 37 C CBD IX0 . . . F 4 21.631 9.751 30.004 1 63.78 ? CBD IX0 601 B 1 HETATM 38 C CBE IX0 . . . F 4 22.206 9.137 31.113 1 66.4 ? CBE IX0 601 B 1 HETATM 39 C CBF IX0 . . . F 4 21.369 8.591 32.089 1 65.96 ? CBF IX0 601 B 1 HETATM 40 C CBG IX0 . . . F 4 19.979 8.656 31.984 1 60.66 ? CBG IX0 601 B 1 HETATM 41 O OBJ IX0 . . . F 4 19.165 8.136 32.935 1 68.21 ? OBJ IX0 601 B 1 HETATM 42 C CBH IX0 . . . F 4 19.41 9.267 30.9 1 60.73 ? CBH IX0 601 B 1 HETATM 43 C CBI IX0 . . . F 4 20.24 9.808 29.917 1 64.52 ? CBI IX0 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #