data_7YNJ # _model_server_result.job_id EjslKsAdQwi4CSgFN3AJeA _model_server_result.datetime_utc '2024-11-21 14:06:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ynj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7YNJ # _exptl.entry_id 7YNJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 194.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YNJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 255 1_555 A SG CYS 511 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 345 A CYS 345 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 355 A CYS 355 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 517 A CYS 517 1_555 A SG CYS 522 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id GYP _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'METHYL-ALPHA-D-GLUCOPYRANOSIDE;ALPHA-METHYL-D-GLUCOPYRANOSIDE;methyl alpha-D-glucoside;methyl D-glucoside;methyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GYP sing 129 n n C1 O1 GYP sing 130 n n C1 O5 GYP sing 131 n n C1 H1 GYP sing 132 n n C2 C3 GYP sing 133 n n C2 O2 GYP sing 134 n n C2 H2 GYP sing 135 n n C3 C4 GYP sing 136 n n C3 O3 GYP sing 137 n n C3 H3 GYP sing 138 n n C4 C5 GYP sing 139 n n C4 O4 GYP sing 140 n n C4 H4 GYP sing 141 n n C5 C6 GYP sing 142 n n C5 O5 GYP sing 143 n n C5 H5 GYP sing 144 n n C6 O6 GYP sing 145 n n C6 H61 GYP sing 146 n n C6 H62 GYP sing 147 n n C7 O1 GYP sing 148 n n C7 H7C1 GYP sing 149 n n C7 H7C2 GYP sing 150 n n C7 H7C3 GYP sing 151 n n O2 HO2 GYP sing 152 n n O3 HO3 GYP sing 153 n n O4 HO4 GYP sing 154 n n O6 HO6 GYP sing 155 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GYP DGlcp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GYP 1-methyl-a-D-glucopyranose 'COMMON NAME' GMML 1 GYP methyl-a-D-glucopyranoside 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 7YNJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id GYP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id GYP _pdbx_nonpoly_scheme.auth_mon_id GYP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GYP . . . C 3 124.283 110.635 102.634 1 48.55 ? C1 GYP 701 A 1 HETATM 2 C C2 GYP . . . C 3 123.316 111.806 102.801 1 48.55 ? C2 GYP 701 A 1 HETATM 3 C C3 GYP . . . C 3 122.533 111.713 104.101 1 48.55 ? C3 GYP 701 A 1 HETATM 4 C C4 GYP . . . C 3 121.91 110.337 104.249 1 48.55 ? C4 GYP 701 A 1 HETATM 5 C C5 GYP . . . C 3 122.99 109.273 104.111 1 48.55 ? C5 GYP 701 A 1 HETATM 6 C C6 GYP . . . C 3 122.412 107.872 104.263 1 48.55 ? C6 GYP 701 A 1 HETATM 7 C C7 GYP . . . C 3 126.424 109.834 103.214 1 48.55 ? C7 GYP 701 A 1 HETATM 8 O O1 GYP . . . C 3 125.376 110.745 103.544 1 48.55 ? O1 GYP 701 A 1 HETATM 9 O O2 GYP . . . C 3 124.036 113.041 102.781 1 48.55 ? O2 GYP 701 A 1 HETATM 10 O O3 GYP . . . C 3 121.496 112.695 104.086 1 48.55 ? O3 GYP 701 A 1 HETATM 11 O O4 GYP . . . C 3 121.278 110.235 105.529 1 48.55 ? O4 GYP 701 A 1 HETATM 12 O O5 GYP . . . C 3 123.606 109.39 102.83 1 48.55 ? O5 GYP 701 A 1 HETATM 13 O O6 GYP . . . C 3 123.479 106.917 104.266 1 48.55 ? O6 GYP 701 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #