data_7YS6 # _model_server_result.job_id pW8fakrOssgcljBFi6ldbg _model_server_result.datetime_utc '2024-12-26 12:35:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ys6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7YS6 # _exptl.entry_id 7YS6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 176.215 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YS6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 288 n n OH HOH SRO sing 289 n n CZ3 CE3 SRO doub 290 n y CZ3 CH2 SRO sing 291 n y CH2 CZ2 SRO doub 292 n y CH2 HH2 SRO sing 293 n n CZ2 CE2 SRO sing 294 n y CZ2 HZ2 SRO sing 295 n n CE2 NE1 SRO sing 296 n y CE2 CD2 SRO doub 297 n y NE1 CD1 SRO sing 298 n y NE1 HNE1 SRO sing 299 n n CD1 CG SRO doub 300 n y CD1 HD1 SRO sing 301 n n CG CB SRO sing 302 n n CG CD2 SRO sing 303 n y CD2 CE3 SRO sing 304 n y CE3 HE3 SRO sing 305 n n CB CA SRO sing 306 n n CB HB1 SRO sing 307 n n CB HB2 SRO sing 308 n n CA NZ SRO sing 309 n n CA HA1 SRO sing 310 n n CA HA2 SRO sing 311 n n NZ HNZ1 SRO sing 312 n n NZ HNZ2 SRO sing 313 n n # _atom_sites.entry_id 7YS6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id SRO _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id SRO _pdbx_nonpoly_scheme.auth_mon_id SRO _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . F 6 113.897 179.906 137 1 32.16 ? OH SRO 401 A 1 HETATM 2 C CZ3 SRO . . . F 6 114.396 178.667 136.73 1 31.44 ? CZ3 SRO 401 A 1 HETATM 3 C CH2 SRO . . . F 6 114.58 178.313 135.382 1 30.83 ? CH2 SRO 401 A 1 HETATM 4 C CZ2 SRO . . . F 6 115.077 177.082 135.034 1 29.31 ? CZ2 SRO 401 A 1 HETATM 5 C CE2 SRO . . . F 6 115.392 176.198 136.06 1 27.34 ? CE2 SRO 401 A 1 HETATM 6 N NE1 SRO . . . F 6 115.896 174.926 136.012 1 27.48 ? NE1 SRO 401 A 1 HETATM 7 C CD1 SRO . . . F 6 116.043 174.457 137.29 1 30.47 ? CD1 SRO 401 A 1 HETATM 8 C CG SRO . . . F 6 115.634 175.4 138.188 1 29.13 ? CG SRO 401 A 1 HETATM 9 C CD2 SRO . . . F 6 115.213 176.535 137.412 1 27.79 ? CD2 SRO 401 A 1 HETATM 10 C CE3 SRO . . . F 6 114.703 177.8 137.741 1 30.61 ? CE3 SRO 401 A 1 HETATM 11 C CB SRO . . . F 6 115.626 175.301 139.682 1 29.7 ? CB SRO 401 A 1 HETATM 12 C CA SRO . . . F 6 116.736 176.103 140.341 1 34.51 ? CA SRO 401 A 1 HETATM 13 N NZ SRO . . . F 6 116.643 176.005 141.797 1 37.63 ? NZ SRO 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #