data_7YSH # _model_server_result.job_id JhL7yve1Pn3xVmWDkJIECw _model_server_result.datetime_utc '2024-10-19 11:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ysh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 7YSH # _exptl.entry_id 7YSH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YSH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 IDS SGN C1 O1 . O4 HO4 . sing 2 ? 4 3 2 SGN IDS C1 O1 . O4 HO4 . sing 3 ? 4 4 3 IDS SGN C1 O1 . O4 HO4 . sing 4 ? 4 5 4 SGN IDS C1 O1 . O4 HO4 . sing 5 ? 4 6 5 IDS SGN C1 O1 . O4 HO4 . sing 6 ? 4 7 6 SGN IDS C1 O1 . O4 HO4 . sing 7 ? 4 8 7 IDS SGN C1 O1 . O4 HO4 . sing 8 ? 4 9 8 SGN IDS C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n E SGN 1 F 1 SGN F 1 SGN 4 n E IDS 2 F 2 IDS F 2 IDS 4 n E SGN 3 F 3 SGN F 3 SGN 4 n E IDS 4 F 4 IDS F 4 IDS 4 n E SGN 5 F 5 SGN F 5 SGN 4 n E IDS 6 F 6 IDS F 6 IDS 4 n E SGN 7 F 7 SGN F 7 SGN 4 n E IDS 8 F 8 IDS F 8 IDS 4 n E SGN 9 F 9 SGN F 9 SGN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 488 A CYS 521 1_555 A SG CYS 930 A CYS 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 539 A CYS 572 1_555 A SG CYS 588 A CYS 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 877 A CYS 910 1_555 A SG CYS 937 A CYS 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 117 B CYS 95 1_555 B SG CYS 135 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 37 D CYS 178 1_555 C SG CYS 89 D CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 136 D CYS 277 1_555 C SG CYS 200 D CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 37 E CYS 178 1_555 D SG CYS 89 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 136 E CYS 277 1_555 D SG CYS 200 E CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 E O4 SGN . F SGN 1 1_555 E C1 IDS . F IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale2 E O4 IDS . F IDS 2 1_555 E C1 SGN . F SGN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale3 E O4 SGN . F SGN 3 1_555 E C1 IDS . F IDS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale4 E O4 IDS . F IDS 4 1_555 E C1 SGN . F SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale5 E O4 SGN . F SGN 5 1_555 E C1 IDS . F IDS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale6 E O4 IDS . F IDS 6 1_555 E C1 SGN . F SGN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale7 E O4 SGN . F SGN 7 1_555 E C1 IDS . F IDS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale8 E O4 IDS . F IDS 8 1_555 E C1 SGN . F SGN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? metalc ? metalc1 A OD1 ASP 393 A ASP 426 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A OD2 ASP 393 A ASP 426 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A SG CYS 706 A CYS 739 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A OD2 ASP 712 A ASP 745 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 A OD2 ASP 782 A ASP 815 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 C NE2 HIS 112 D HIS 253 1_555 G CU CU . D CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc7 G CU CU . D CU 401 1_555 D NE2 HIS 112 E HIS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YSH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 ZN A 1 1001 1008 ZN ZN . G 6 CU D 1 401 401 CU CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 136.81 _atom_site.Cartn_y 130.178 _atom_site.Cartn_z 102.371 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #