data_7YTF # _model_server_result.job_id aJce3inGPNk0MOCE7mKHyQ _model_server_result.datetime_utc '2024-12-12 11:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ytf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7YTF # _exptl.entry_id 7YTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.84 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "beta,beta-carotene-4,4'-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YTF _cell.length_a 154.635 _cell.length_b 154.635 _cell.length_c 86.866 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H52 O2' _chem_comp.formula_weight 564.84 _chem_comp.id 45D _chem_comp.mon_nstd_flag . _chem_comp.name "beta,beta-carotene-4,4'-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Isomer of Canthaxanthin' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C17 45D doub 1 n n C17 C09 45D sing 2 n n C17 C15 45D sing 3 n n C21 C15 45D sing 4 n n C09 C05 45D sing 5 n n C15 C07 45D doub 6 n n C05 C03 45D sing 7 n n C07 C03 45D sing 8 n n C07 C19 45D sing 9 n n C03 C12 45D sing 10 n n C03 C11 45D sing 11 n n C19 C23 45D doub 12 e n C23 C25 45D sing 13 n n C25 C27 45D sing 14 n n C25 C29 45D doub 15 e n C29 C31 45D sing 16 n n C31 C33 45D doub 17 e n C33 C35 45D sing 18 n n C35 C37 45D doub 19 e n C35 C39 45D sing 20 n n C37 C41 45D sing 21 n n C41 C42 45D doub 22 e n C42 C38 45D sing 23 n n C40 C36 45D sing 24 n n C38 C36 45D doub 25 e n C36 C34 45D sing 26 n n C34 C32 45D doub 27 e n C32 C30 45D sing 28 n n C28 C26 45D sing 29 n n C30 C26 45D doub 30 e n C26 C24 45D sing 31 n n C24 C20 45D doub 32 e n C20 C08 45D sing 33 n n C14 C04 45D sing 34 n n C08 C04 45D sing 35 n n C08 C16 45D doub 36 n n C22 C16 45D sing 37 n n C13 C04 45D sing 38 n n C04 C06 45D sing 39 n n C16 C18 45D sing 40 n n C06 C10 45D sing 41 n n C18 C10 45D sing 42 n n C18 O02 45D doub 43 n n C05 H052 45D sing 44 n n C05 H051 45D sing 45 n n C06 H062 45D sing 46 n n C06 H061 45D sing 47 n n C09 H092 45D sing 48 n n C09 H091 45D sing 49 n n C10 H102 45D sing 50 n n C10 H101 45D sing 51 n n C11 H113 45D sing 52 n n C11 H111 45D sing 53 n n C11 H112 45D sing 54 n n C12 H122 45D sing 55 n n C12 H123 45D sing 56 n n C12 H121 45D sing 57 n n C13 H131 45D sing 58 n n C13 H132 45D sing 59 n n C13 H133 45D sing 60 n n C14 H141 45D sing 61 n n C14 H143 45D sing 62 n n C14 H142 45D sing 63 n n C19 H191 45D sing 64 n n C20 H201 45D sing 65 n n C21 H212 45D sing 66 n n C21 H213 45D sing 67 n n C21 H211 45D sing 68 n n C22 H223 45D sing 69 n n C22 H222 45D sing 70 n n C22 H221 45D sing 71 n n C23 H231 45D sing 72 n n C24 H241 45D sing 73 n n C27 H273 45D sing 74 n n C27 H272 45D sing 75 n n C27 H271 45D sing 76 n n C28 H281 45D sing 77 n n C28 H282 45D sing 78 n n C28 H283 45D sing 79 n n C29 H291 45D sing 80 n n C30 H301 45D sing 81 n n C31 H311 45D sing 82 n n C32 H321 45D sing 83 n n C33 H331 45D sing 84 n n C34 H341 45D sing 85 n n C37 H371 45D sing 86 n n C38 H381 45D sing 87 n n C39 H393 45D sing 88 n n C39 H392 45D sing 89 n n C39 H391 45D sing 90 n n C40 H401 45D sing 91 n n C40 H402 45D sing 92 n n C40 H403 45D sing 93 n n C41 H411 45D sing 94 n n C42 H421 45D sing 95 n n # _atom_sites.entry_id 7YTF _atom_sites.fract_transf_matrix[1][1] 0.006467 _atom_sites.fract_transf_matrix[1][2] 0.003734 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 45D A 1 501 501 45D 45D . C 3 HOH A 1 601 84 HOH HOH . C 3 HOH A 2 602 52 HOH HOH . C 3 HOH A 3 603 14 HOH HOH . C 3 HOH A 4 604 67 HOH HOH . C 3 HOH A 5 605 22 HOH HOH . C 3 HOH A 6 606 48 HOH HOH . C 3 HOH A 7 607 72 HOH HOH . C 3 HOH A 8 608 38 HOH HOH . C 3 HOH A 9 609 4 HOH HOH . C 3 HOH A 10 610 6 HOH HOH . C 3 HOH A 11 611 21 HOH HOH . C 3 HOH A 12 612 32 HOH HOH . C 3 HOH A 13 613 50 HOH HOH . C 3 HOH A 14 614 2 HOH HOH . C 3 HOH A 15 615 17 HOH HOH . C 3 HOH A 16 616 74 HOH HOH . C 3 HOH A 17 617 81 HOH HOH . C 3 HOH A 18 618 75 HOH HOH . C 3 HOH A 19 619 33 HOH HOH . C 3 HOH A 20 620 79 HOH HOH . C 3 HOH A 21 621 12 HOH HOH . C 3 HOH A 22 622 47 HOH HOH . C 3 HOH A 23 623 37 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 8 HOH HOH . C 3 HOH A 26 626 23 HOH HOH . C 3 HOH A 27 627 9 HOH HOH . C 3 HOH A 28 628 3 HOH HOH . C 3 HOH A 29 629 13 HOH HOH . C 3 HOH A 30 630 83 HOH HOH . C 3 HOH A 31 631 36 HOH HOH . C 3 HOH A 32 632 16 HOH HOH . C 3 HOH A 33 633 27 HOH HOH . C 3 HOH A 34 634 88 HOH HOH . C 3 HOH A 35 635 39 HOH HOH . C 3 HOH A 36 636 58 HOH HOH . C 3 HOH A 37 637 73 HOH HOH . C 3 HOH A 38 638 89 HOH HOH . C 3 HOH A 39 639 70 HOH HOH . C 3 HOH A 40 640 87 HOH HOH . C 3 HOH A 41 641 62 HOH HOH . C 3 HOH A 42 642 7 HOH HOH . C 3 HOH A 43 643 24 HOH HOH . C 3 HOH A 44 644 61 HOH HOH . C 3 HOH A 45 645 28 HOH HOH . C 3 HOH A 46 646 19 HOH HOH . C 3 HOH A 47 647 86 HOH HOH . C 3 HOH A 48 648 45 HOH HOH . C 3 HOH A 49 649 42 HOH HOH . C 3 HOH A 50 650 65 HOH HOH . C 3 HOH A 51 651 90 HOH HOH . C 3 HOH A 52 652 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 45D . . . B 2 -53.536 62.721 -2.002 1 57.35 ? O01 45D 501 A 1 HETATM 2 O O02 45D . . . B 2 -49.602 38.841 -15.45 1 132.51 ? O02 45D 501 A 1 HETATM 3 C C03 45D . . . B 2 -51.891 59.02 -2.746 1 56.83 ? C03 45D 501 A 1 HETATM 4 C C04 45D . . . B 2 -50.285 41.065 -18.296 1 85.93 ? C04 45D 501 A 1 HETATM 5 C C05 45D . . . B 2 -51.064 60.187 -2.206 1 61.07 ? C05 45D 501 A 1 HETATM 6 C C06 45D . . . B 2 -51.286 39.913 -18.41 1 87.89 ? C06 45D 501 A 1 HETATM 7 C C07 45D . . . B 2 -53.256 59.438 -3.256 1 56.81 ? C07 45D 501 A 1 HETATM 8 C C08 45D . . . B 2 -50.423 41.776 -16.969 1 80.97 ? C08 45D 501 A 1 HETATM 9 C C09 45D . . . B 2 -51.923 61.136 -1.39 1 56.56 ? C09 45D 501 A 1 HETATM 10 C C10 45D . . . B 2 -51.168 38.991 -17.206 1 95.81 ? C10 45D 501 A 1 HETATM 11 C C11 45D . . . B 2 -52.041 57.995 -1.652 1 58.33 ? C11 45D 501 A 1 HETATM 12 C C12 45D . . . B 2 -51.078 58.393 -3.849 1 59.41 ? C12 45D 501 A 1 HETATM 13 C C13 45D . . . B 2 -48.907 40.465 -18.422 1 99.15 ? C13 45D 501 A 1 HETATM 14 C C14 45D . . . B 2 -50.497 42.033 -19.437 1 82.31 ? C14 45D 501 A 1 HETATM 15 C C15 45D . . . B 2 -53.796 60.664 -3.034 1 53.09 ? C15 45D 501 A 1 HETATM 16 C C16 45D . . . B 2 -50.353 40.991 -15.888 1 91.87 ? C16 45D 501 A 1 HETATM 17 C C17 45D . . . B 2 -53.129 61.584 -2.151 1 57.18 ? C17 45D 501 A 1 HETATM 18 C C18 45D . . . B 2 -50.324 39.574 -16.113 1 98.65 ? C18 45D 501 A 1 HETATM 19 C C19 45D . . . B 2 -54.033 58.513 -3.99 1 53.72 ? C19 45D 501 A 1 HETATM 20 C C20 45D . . . B 2 -50.618 43.161 -16.879 1 71.42 ? C20 45D 501 A 1 HETATM 21 C C21 45D . . . B 2 -55.078 61.157 -3.626 1 63.1 ? C21 45D 501 A 1 HETATM 22 C C22 45D . . . B 2 -50.283 41.434 -14.458 1 90.88 ? C22 45D 501 A 1 HETATM 23 C C23 45D . . . B 2 -53.669 57.857 -5.105 1 55.84 ? C23 45D 501 A 1 HETATM 24 C C24 45D . . . B 2 -51.097 43.819 -15.82 1 58.86 ? C24 45D 501 A 1 HETATM 25 C C25 45D . . . B 2 -54.391 56.83 -5.66 1 58.46 ? C25 45D 501 A 1 HETATM 26 C C26 45D . . . B 2 -51.297 45.168 -15.839 1 62.38 ? C26 45D 501 A 1 HETATM 27 C C27 45D . . . B 2 -55.795 56.653 -5.288 1 61.58 ? C27 45D 501 A 1 HETATM 28 C C28 45D . . . B 2 -50.744 45.953 -16.943 1 61.1 ? C28 45D 501 A 1 HETATM 29 C C29 45D . . . B 2 -53.856 55.933 -6.568 1 50.98 ? C29 45D 501 A 1 HETATM 30 C C30 45D . . . B 2 -52.014 45.846 -14.864 1 56.06 ? C30 45D 501 A 1 HETATM 31 C C31 45D . . . B 2 -54.47 54.889 -7.194 1 52.22 ? C31 45D 501 A 1 HETATM 32 C C32 45D . . . B 2 -52.262 47.186 -14.768 1 56.13 ? C32 45D 501 A 1 HETATM 33 C C33 45D . . . B 2 -53.914 54.161 -8.205 1 57.93 ? C33 45D 501 A 1 HETATM 34 C C34 45D . . . B 2 -52.878 47.812 -13.724 1 53.51 ? C34 45D 501 A 1 HETATM 35 C C35 45D . . . B 2 -54.375 53.011 -8.826 1 57.06 ? C35 45D 501 A 1 HETATM 36 C C36 45D . . . B 2 -52.902 49.159 -13.416 1 49.18 ? C36 45D 501 A 1 HETATM 37 C C37 45D . . . B 2 -53.925 52.588 -10.055 1 51.25 ? C37 45D 501 A 1 HETATM 38 C C38 45D . . . B 2 -53.625 49.678 -12.365 1 45 ? C38 45D 501 A 1 HETATM 39 C C39 45D . . . B 2 -55.378 52.194 -8.141 1 57.26 ? C39 45D 501 A 1 HETATM 40 C C40 45D . . . B 2 -52.119 50.076 -14.241 1 54.87 ? C40 45D 501 A 1 HETATM 41 C C41 45D . . . B 2 -54.021 51.348 -10.598 1 49.67 ? C41 45D 501 A 1 HETATM 42 C C42 45D . . . B 2 -53.407 50.84 -11.702 1 45.14 ? C42 45D 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #