data_7YTJ
#
_model_server_result.job_id            HlJbXzwG9zg1pHq2jXPUkA 
_model_server_result.datetime_utc      '2025-02-18 04:37:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ytj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1003}' 
#
_entry.id    7YTJ 
#
_exptl.entry_id    7YTJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YTJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 289 n n 
P O14 PC1 doub 290 n n 
P O13 PC1 sing 291 n n 
P O11 PC1 sing 292 n n 
O13 C11 PC1 sing 293 n n 
C11 C12 PC1 sing 294 n n 
C11 H111 PC1 sing 295 n n 
C11 H112 PC1 sing 296 n n 
C12 N PC1 sing 297 n n 
C12 H121 PC1 sing 298 n n 
C12 H122 PC1 sing 299 n n 
N C13 PC1 sing 300 n n 
N C14 PC1 sing 301 n n 
N C15 PC1 sing 302 n n 
C13 H131 PC1 sing 303 n n 
C13 H132 PC1 sing 304 n n 
C13 H133 PC1 sing 305 n n 
C14 H141 PC1 sing 306 n n 
C14 H142 PC1 sing 307 n n 
C14 H143 PC1 sing 308 n n 
C15 H151 PC1 sing 309 n n 
C15 H152 PC1 sing 310 n n 
C15 H153 PC1 sing 311 n n 
O11 C1 PC1 sing 312 n n 
C1 C2 PC1 sing 313 n n 
C1 H11 PC1 sing 314 n n 
C1 H12 PC1 sing 315 n n 
C2 O21 PC1 sing 316 n n 
C2 C3 PC1 sing 317 n n 
C2 H2 PC1 sing 318 n n 
O21 C21 PC1 sing 319 n n 
C21 O22 PC1 doub 320 n n 
C21 C22 PC1 sing 321 n n 
C22 C23 PC1 sing 322 n n 
C22 H221 PC1 sing 323 n n 
C22 H222 PC1 sing 324 n n 
C23 C24 PC1 sing 325 n n 
C23 H231 PC1 sing 326 n n 
C23 H232 PC1 sing 327 n n 
C24 C25 PC1 sing 328 n n 
C24 H241 PC1 sing 329 n n 
C24 H242 PC1 sing 330 n n 
C25 C26 PC1 sing 331 n n 
C25 H251 PC1 sing 332 n n 
C25 H252 PC1 sing 333 n n 
C26 C27 PC1 sing 334 n n 
C26 H261 PC1 sing 335 n n 
C26 H262 PC1 sing 336 n n 
C27 C28 PC1 sing 337 n n 
C27 H271 PC1 sing 338 n n 
C27 H272 PC1 sing 339 n n 
C28 C29 PC1 sing 340 n n 
C28 H281 PC1 sing 341 n n 
C28 H282 PC1 sing 342 n n 
C29 C2A PC1 sing 343 n n 
C29 H291 PC1 sing 344 n n 
C29 H292 PC1 sing 345 n n 
C2A C2B PC1 sing 346 n n 
C2A H2A1 PC1 sing 347 n n 
C2A H2A2 PC1 sing 348 n n 
C2B C2C PC1 sing 349 n n 
C2B H2B1 PC1 sing 350 n n 
C2B H2B2 PC1 sing 351 n n 
C2C C2D PC1 sing 352 n n 
C2C H2C1 PC1 sing 353 n n 
C2C H2C2 PC1 sing 354 n n 
C2D C2E PC1 sing 355 n n 
C2D H2D1 PC1 sing 356 n n 
C2D H2D2 PC1 sing 357 n n 
C2E C2F PC1 sing 358 n n 
C2E H2E1 PC1 sing 359 n n 
C2E H2E2 PC1 sing 360 n n 
C2F C2G PC1 sing 361 n n 
C2F H2F1 PC1 sing 362 n n 
C2F H2F2 PC1 sing 363 n n 
C2G C2H PC1 sing 364 n n 
C2G H2G1 PC1 sing 365 n n 
C2G H2G2 PC1 sing 366 n n 
C2H C2I PC1 sing 367 n n 
C2H H2H1 PC1 sing 368 n n 
C2H H2H2 PC1 sing 369 n n 
C2I H2I1 PC1 sing 370 n n 
C2I H2I2 PC1 sing 371 n n 
C2I H2I3 PC1 sing 372 n n 
C3 O31 PC1 sing 373 n n 
C3 H31 PC1 sing 374 n n 
C3 H32 PC1 sing 375 n n 
O31 C31 PC1 sing 376 n n 
C31 O32 PC1 doub 377 n n 
C31 C32 PC1 sing 378 n n 
C32 C33 PC1 sing 379 n n 
C32 H321 PC1 sing 380 n n 
C32 H322 PC1 sing 381 n n 
C33 C34 PC1 sing 382 n n 
C33 H331 PC1 sing 383 n n 
C33 H332 PC1 sing 384 n n 
C34 C35 PC1 sing 385 n n 
C34 H341 PC1 sing 386 n n 
C34 H342 PC1 sing 387 n n 
C35 C36 PC1 sing 388 n n 
C35 H351 PC1 sing 389 n n 
C35 H352 PC1 sing 390 n n 
C36 C37 PC1 sing 391 n n 
C36 H361 PC1 sing 392 n n 
C36 H362 PC1 sing 393 n n 
C37 C38 PC1 sing 394 n n 
C37 H371 PC1 sing 395 n n 
C37 H372 PC1 sing 396 n n 
C38 C39 PC1 sing 397 n n 
C38 H381 PC1 sing 398 n n 
C38 H382 PC1 sing 399 n n 
C39 C3A PC1 sing 400 n n 
C39 H391 PC1 sing 401 n n 
C39 H392 PC1 sing 402 n n 
C3A C3B PC1 sing 403 n n 
C3A H3A1 PC1 sing 404 n n 
C3A H3A2 PC1 sing 405 n n 
C3B C3C PC1 sing 406 n n 
C3B H3B1 PC1 sing 407 n n 
C3B H3B2 PC1 sing 408 n n 
C3C C3D PC1 sing 409 n n 
C3C H3C1 PC1 sing 410 n n 
C3C H3C2 PC1 sing 411 n n 
C3D C3E PC1 sing 412 n n 
C3D H3D1 PC1 sing 413 n n 
C3D H3D2 PC1 sing 414 n n 
C3E C3F PC1 sing 415 n n 
C3E H3E1 PC1 sing 416 n n 
C3E H3E2 PC1 sing 417 n n 
C3F C3G PC1 sing 418 n n 
C3F H3F1 PC1 sing 419 n n 
C3F H3F2 PC1 sing 420 n n 
C3G C3H PC1 sing 421 n n 
C3G H3G1 PC1 sing 422 n n 
C3G H3G2 PC1 sing 423 n n 
C3H C3I PC1 sing 424 n n 
C3H H3H1 PC1 sing 425 n n 
C3H H3H2 PC1 sing 426 n n 
C3I H3I1 PC1 sing 427 n n 
C3I H3I2 PC1 sing 428 n n 
C3I H3I3 PC1 sing 429 n n 
#
_atom_sites.entry_id                     7YTJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 IHP D 1 1001 1001 IHP IHP . 
G 4 IHP D 1 1002 1002 IHP IHP . 
H 5 PC1 D 1 1003 1004 PC1 PC1 . 
I 4 IHP D 1 1004 1005 IHP IHP . 
J 6 PO4 D 1 1005 1 PO4 PO4 . 
K 6 PO4 D 1 1006 2 PO4 PO4 . 
L 5 PC1 E 1 901 1003 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . H 5 135.512 142.986 108.566 1 78.36 ? O12 PC1 1003 D 1 
HETATM 2 P P PC1 . . . H 5 134.742 144.252 108.856 1 99.19 ? P PC1 1003 D 1 
HETATM 3 O O14 PC1 . . . H 5 134.737 145.131 107.628 1 82.86 ? O14 PC1 1003 D 1 
HETATM 4 O O13 PC1 . . . H 5 133.19 143.885 109.273 1 83.61 ? O13 PC1 1003 D 1 
HETATM 5 C C11 PC1 . . . H 5 132.422 143.097 108.41 1 76.08 ? C11 PC1 1003 D 1 
HETATM 6 C C12 PC1 . . . H 5 130.949 143.487 108.554 1 79.29 ? C12 PC1 1003 D 1 
HETATM 7 N N PC1 . . . H 5 130.484 144.219 107.385 1 85.32 ? N PC1 1003 D 1 
HETATM 8 C C13 PC1 . . . H 5 131.347 145.357 107.115 1 78.69 ? C13 PC1 1003 D 1 
HETATM 9 C C14 PC1 . . . H 5 130.474 143.338 106.232 1 75.63 ? C14 PC1 1003 D 1 
HETATM 10 C C15 PC1 . . . H 5 129.136 144.697 107.63 1 77.46 ? C15 PC1 1003 D 1 
HETATM 11 O O11 PC1 . . . H 5 135.446 145.063 110.106 1 78.75 ? O11 PC1 1003 D 1 
HETATM 12 C C1 PC1 . . . H 5 134.741 146.134 110.665 1 73.06 ? C1 PC1 1003 D 1 
HETATM 13 C C2 PC1 . . . H 5 135.695 147.006 111.473 1 75.57 ? C2 PC1 1003 D 1 
HETATM 14 O O21 PC1 . . . H 5 136.599 146.199 112.166 1 74.08 ? O21 PC1 1003 D 1 
HETATM 15 C C21 PC1 . . . H 5 137.932 146.566 111.974 1 76.25 ? C21 PC1 1003 D 1 
HETATM 16 O O22 PC1 . . . H 5 138.289 146.961 110.915 1 76.8 ? O22 PC1 1003 D 1 
HETATM 17 C C22 PC1 . . . H 5 138.925 146.457 113.13 1 73.36 ? C22 PC1 1003 D 1 
HETATM 18 C C23 PC1 . . . H 5 138.205 145.925 114.368 1 72.8 ? C23 PC1 1003 D 1 
HETATM 19 C C24 PC1 . . . H 5 139.217 145.363 115.366 1 74.73 ? C24 PC1 1003 D 1 
HETATM 20 C C25 PC1 . . . H 5 140.366 146.348 115.56 1 73.73 ? C25 PC1 1003 D 1 
HETATM 21 C C26 PC1 . . . H 5 141.691 145.607 115.401 1 71.96 ? C26 PC1 1003 D 1 
HETATM 22 C C27 PC1 . . . H 5 142.275 145.292 116.775 1 71.02 ? C27 PC1 1003 D 1 
HETATM 23 C C28 PC1 . . . H 5 143.731 145.748 116.82 1 69.38 ? C28 PC1 1003 D 1 
HETATM 24 C C29 PC1 . . . H 5 144.193 145.832 118.274 1 68.43 ? C29 PC1 1003 D 1 
HETATM 25 C C2A PC1 . . . H 5 144.641 147.258 118.59 1 71.03 ? C2A PC1 1003 D 1 
HETATM 26 C C2B PC1 . . . H 5 143.433 148.192 118.596 1 78.08 ? C2B PC1 1003 D 1 
HETATM 27 C C2C PC1 . . . H 5 142.736 148.14 119.955 1 77.84 ? C2C PC1 1003 D 1 
HETATM 28 C C2D PC1 . . . H 5 141.331 148.73 119.84 1 71.39 ? C2D PC1 1003 D 1 
HETATM 29 C C2E PC1 . . . H 5 140.385 147.693 119.238 1 76.36 ? C2E PC1 1003 D 1 
HETATM 30 C C2F PC1 . . . H 5 140.38 146.438 120.111 1 78.16 ? C2F PC1 1003 D 1 
HETATM 31 C C2G PC1 . . . H 5 139.7 145.289 119.369 1 73.47 ? C2G PC1 1003 D 1 
HETATM 32 C C2H PC1 . . . H 5 140.161 143.957 119.958 1 68.95 ? C2H PC1 1003 D 1 
HETATM 33 C C2I PC1 . . . H 5 139.821 142.823 118.997 1 68.45 ? C2I PC1 1003 D 1 
HETATM 34 C C3 PC1 . . . H 5 134.914 147.827 112.494 1 77.68 ? C3 PC1 1003 D 1 
HETATM 35 O O31 PC1 . . . H 5 135.461 147.568 113.755 1 76.89 ? O31 PC1 1003 D 1 
HETATM 36 C C31 PC1 . . . H 5 135.568 148.687 114.585 1 76.96 ? C31 PC1 1003 D 1 
HETATM 37 O O32 PC1 . . . H 5 135.109 149.726 114.249 1 77.28 ? O32 PC1 1003 D 1 
HETATM 38 C C32 PC1 . . . H 5 136.274 148.563 115.929 1 70.91 ? C32 PC1 1003 D 1 
HETATM 39 C C33 PC1 . . . H 5 135.976 149.793 116.778 1 70.4 ? C33 PC1 1003 D 1 
HETATM 40 C C34 PC1 . . . H 5 136.417 149.518 118.212 1 73.27 ? C34 PC1 1003 D 1 
HETATM 41 C C35 PC1 . . . H 5 135.819 148.19 118.675 1 70.88 ? C35 PC1 1003 D 1 
HETATM 42 C C36 PC1 . . . H 5 135.757 148.148 120.2 1 70.64 ? C36 PC1 1003 D 1 
HETATM 43 C C37 PC1 . . . H 5 137.117 148.525 120.777 1 72.2 ? C37 PC1 1003 D 1 
HETATM 44 C C38 PC1 . . . H 5 137.357 147.731 122.056 1 72.3 ? C38 PC1 1003 D 1 
HETATM 45 C C39 PC1 . . . H 5 138.155 148.589 123.033 1 73.31 ? C39 PC1 1003 D 1 
HETATM 46 C C3A PC1 . . . H 5 138.548 147.738 124.239 1 71.06 ? C3A PC1 1003 D 1 
HETATM 47 C C3B PC1 . . . H 5 139.258 148.605 125.278 1 73.47 ? C3B PC1 1003 D 1 
HETATM 48 C C3C PC1 . . . H 5 140.674 148.079 125.494 1 72.07 ? C3C PC1 1003 D 1 
HETATM 49 C C3D PC1 . . . H 5 141.469 148.234 124.2 1 75.09 ? C3D PC1 1003 D 1 
HETATM 50 C C3E PC1 . . . H 5 142.355 147.008 123.983 1 82.07 ? C3E PC1 1003 D 1 
HETATM 51 C C3F PC1 . . . H 5 141.503 145.741 123.979 1 78.07 ? C3F PC1 1003 D 1 
HETATM 52 C C3G PC1 . . . H 5 142.043 144.773 122.929 1 72.43 ? C3G PC1 1003 D 1 
HETATM 53 C C3H PC1 . . . H 5 143.454 144.341 123.314 1 68 ? C3H PC1 1003 D 1 
HETATM 54 C C3I PC1 . . . H 5 143.379 143.378 124.495 1 70.8 ? C3I PC1 1003 D 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#