data_7YTJ
#
_model_server_result.job_id            gBE9mY6docmtlQCVGA3pVQ 
_model_server_result.datetime_utc      '2025-02-18 04:27:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ytj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    7YTJ 
#
_exptl.entry_id    7YTJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YTJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 289 n n 
P O14 PC1 doub 290 n n 
P O13 PC1 sing 291 n n 
P O11 PC1 sing 292 n n 
O13 C11 PC1 sing 293 n n 
C11 C12 PC1 sing 294 n n 
C11 H111 PC1 sing 295 n n 
C11 H112 PC1 sing 296 n n 
C12 N PC1 sing 297 n n 
C12 H121 PC1 sing 298 n n 
C12 H122 PC1 sing 299 n n 
N C13 PC1 sing 300 n n 
N C14 PC1 sing 301 n n 
N C15 PC1 sing 302 n n 
C13 H131 PC1 sing 303 n n 
C13 H132 PC1 sing 304 n n 
C13 H133 PC1 sing 305 n n 
C14 H141 PC1 sing 306 n n 
C14 H142 PC1 sing 307 n n 
C14 H143 PC1 sing 308 n n 
C15 H151 PC1 sing 309 n n 
C15 H152 PC1 sing 310 n n 
C15 H153 PC1 sing 311 n n 
O11 C1 PC1 sing 312 n n 
C1 C2 PC1 sing 313 n n 
C1 H11 PC1 sing 314 n n 
C1 H12 PC1 sing 315 n n 
C2 O21 PC1 sing 316 n n 
C2 C3 PC1 sing 317 n n 
C2 H2 PC1 sing 318 n n 
O21 C21 PC1 sing 319 n n 
C21 O22 PC1 doub 320 n n 
C21 C22 PC1 sing 321 n n 
C22 C23 PC1 sing 322 n n 
C22 H221 PC1 sing 323 n n 
C22 H222 PC1 sing 324 n n 
C23 C24 PC1 sing 325 n n 
C23 H231 PC1 sing 326 n n 
C23 H232 PC1 sing 327 n n 
C24 C25 PC1 sing 328 n n 
C24 H241 PC1 sing 329 n n 
C24 H242 PC1 sing 330 n n 
C25 C26 PC1 sing 331 n n 
C25 H251 PC1 sing 332 n n 
C25 H252 PC1 sing 333 n n 
C26 C27 PC1 sing 334 n n 
C26 H261 PC1 sing 335 n n 
C26 H262 PC1 sing 336 n n 
C27 C28 PC1 sing 337 n n 
C27 H271 PC1 sing 338 n n 
C27 H272 PC1 sing 339 n n 
C28 C29 PC1 sing 340 n n 
C28 H281 PC1 sing 341 n n 
C28 H282 PC1 sing 342 n n 
C29 C2A PC1 sing 343 n n 
C29 H291 PC1 sing 344 n n 
C29 H292 PC1 sing 345 n n 
C2A C2B PC1 sing 346 n n 
C2A H2A1 PC1 sing 347 n n 
C2A H2A2 PC1 sing 348 n n 
C2B C2C PC1 sing 349 n n 
C2B H2B1 PC1 sing 350 n n 
C2B H2B2 PC1 sing 351 n n 
C2C C2D PC1 sing 352 n n 
C2C H2C1 PC1 sing 353 n n 
C2C H2C2 PC1 sing 354 n n 
C2D C2E PC1 sing 355 n n 
C2D H2D1 PC1 sing 356 n n 
C2D H2D2 PC1 sing 357 n n 
C2E C2F PC1 sing 358 n n 
C2E H2E1 PC1 sing 359 n n 
C2E H2E2 PC1 sing 360 n n 
C2F C2G PC1 sing 361 n n 
C2F H2F1 PC1 sing 362 n n 
C2F H2F2 PC1 sing 363 n n 
C2G C2H PC1 sing 364 n n 
C2G H2G1 PC1 sing 365 n n 
C2G H2G2 PC1 sing 366 n n 
C2H C2I PC1 sing 367 n n 
C2H H2H1 PC1 sing 368 n n 
C2H H2H2 PC1 sing 369 n n 
C2I H2I1 PC1 sing 370 n n 
C2I H2I2 PC1 sing 371 n n 
C2I H2I3 PC1 sing 372 n n 
C3 O31 PC1 sing 373 n n 
C3 H31 PC1 sing 374 n n 
C3 H32 PC1 sing 375 n n 
O31 C31 PC1 sing 376 n n 
C31 O32 PC1 doub 377 n n 
C31 C32 PC1 sing 378 n n 
C32 C33 PC1 sing 379 n n 
C32 H321 PC1 sing 380 n n 
C32 H322 PC1 sing 381 n n 
C33 C34 PC1 sing 382 n n 
C33 H331 PC1 sing 383 n n 
C33 H332 PC1 sing 384 n n 
C34 C35 PC1 sing 385 n n 
C34 H341 PC1 sing 386 n n 
C34 H342 PC1 sing 387 n n 
C35 C36 PC1 sing 388 n n 
C35 H351 PC1 sing 389 n n 
C35 H352 PC1 sing 390 n n 
C36 C37 PC1 sing 391 n n 
C36 H361 PC1 sing 392 n n 
C36 H362 PC1 sing 393 n n 
C37 C38 PC1 sing 394 n n 
C37 H371 PC1 sing 395 n n 
C37 H372 PC1 sing 396 n n 
C38 C39 PC1 sing 397 n n 
C38 H381 PC1 sing 398 n n 
C38 H382 PC1 sing 399 n n 
C39 C3A PC1 sing 400 n n 
C39 H391 PC1 sing 401 n n 
C39 H392 PC1 sing 402 n n 
C3A C3B PC1 sing 403 n n 
C3A H3A1 PC1 sing 404 n n 
C3A H3A2 PC1 sing 405 n n 
C3B C3C PC1 sing 406 n n 
C3B H3B1 PC1 sing 407 n n 
C3B H3B2 PC1 sing 408 n n 
C3C C3D PC1 sing 409 n n 
C3C H3C1 PC1 sing 410 n n 
C3C H3C2 PC1 sing 411 n n 
C3D C3E PC1 sing 412 n n 
C3D H3D1 PC1 sing 413 n n 
C3D H3D2 PC1 sing 414 n n 
C3E C3F PC1 sing 415 n n 
C3E H3E1 PC1 sing 416 n n 
C3E H3E2 PC1 sing 417 n n 
C3F C3G PC1 sing 418 n n 
C3F H3F1 PC1 sing 419 n n 
C3F H3F2 PC1 sing 420 n n 
C3G C3H PC1 sing 421 n n 
C3G H3G1 PC1 sing 422 n n 
C3G H3G2 PC1 sing 423 n n 
C3H C3I PC1 sing 424 n n 
C3H H3H1 PC1 sing 425 n n 
C3H H3H2 PC1 sing 426 n n 
C3I H3I1 PC1 sing 427 n n 
C3I H3I2 PC1 sing 428 n n 
C3I H3I3 PC1 sing 429 n n 
#
_atom_sites.entry_id                     7YTJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 IHP D 1 1001 1001 IHP IHP . 
G 4 IHP D 1 1002 1002 IHP IHP . 
H 5 PC1 D 1 1003 1004 PC1 PC1 . 
I 4 IHP D 1 1004 1005 IHP IHP . 
J 6 PO4 D 1 1005 1 PO4 PO4 . 
K 6 PO4 D 1 1006 2 PO4 PO4 . 
L 5 PC1 E 1 901 1003 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . L 5 135.753 152.035 107.489 1 45.96 ? O12 PC1 901 E 1 
HETATM 2 P P PC1 . . . L 5 136.711 152.715 108.438 1 65.15 ? P PC1 901 E 1 
HETATM 3 O O14 PC1 . . . L 5 138.122 152.29 108.11 1 42.28 ? O14 PC1 901 E 1 
HETATM 4 O O13 PC1 . . . L 5 136.576 154.35 108.279 1 43.86 ? O13 PC1 901 E 1 
HETATM 5 C C11 PC1 . . . L 5 136.619 154.911 106.999 1 36.79 ? C11 PC1 901 E 1 
HETATM 6 C C12 PC1 . . . L 5 137.132 156.349 107.101 1 38.35 ? C12 PC1 901 E 1 
HETATM 7 N N PC1 . . . L 5 138.486 156.463 106.579 1 46.36 ? N PC1 901 E 1 
HETATM 8 C C13 PC1 . . . L 5 139.36 155.485 107.204 1 33.66 ? C13 PC1 901 E 1 
HETATM 9 C C14 PC1 . . . L 5 138.471 156.248 105.145 1 38.29 ? C14 PC1 901 E 1 
HETATM 10 C C15 PC1 . . . L 5 138.989 157.795 106.86 1 41.24 ? C15 PC1 901 E 1 
HETATM 11 O O11 PC1 . . . L 5 136.359 152.294 109.993 1 37.51 ? O11 PC1 901 E 1 
HETATM 12 C C1 PC1 . . . L 5 136.061 153.313 110.905 1 38.62 ? C1 PC1 901 E 1 
HETATM 13 C C2 PC1 . . . L 5 136.312 152.838 112.333 1 41.61 ? C2 PC1 901 E 1 
HETATM 14 O O21 PC1 . . . L 5 137.159 153.756 112.966 1 44.22 ? O21 PC1 901 E 1 
HETATM 15 C C21 PC1 . . . L 5 136.857 154.032 114.305 1 34.31 ? C21 PC1 901 E 1 
HETATM 16 O O22 PC1 . . . L 5 136.043 154.849 114.571 1 29.35 ? O22 PC1 901 E 1 
HETATM 17 C C22 PC1 . . . L 5 137.579 153.289 115.428 1 32.78 ? C22 PC1 901 E 1 
HETATM 18 C C23 PC1 . . . L 5 137.676 154.201 116.648 1 31.86 ? C23 PC1 901 E 1 
HETATM 19 C C24 PC1 . . . L 5 139.142 154.419 117.013 1 31.15 ? C24 PC1 901 E 1 
HETATM 20 C C25 PC1 . . . L 5 139.695 153.174 117.702 1 32.24 ? C25 PC1 901 E 1 
HETATM 21 C C26 PC1 . . . L 5 140.864 153.574 118.598 1 26.21 ? C26 PC1 901 E 1 
HETATM 22 C C27 PC1 . . . L 5 141.24 152.4 119.499 1 28.09 ? C27 PC1 901 E 1 
HETATM 23 C C28 PC1 . . . L 5 142.349 152.822 120.463 1 32.54 ? C28 PC1 901 E 1 
HETATM 24 C C29 PC1 . . . L 5 142.484 151.769 121.564 1 39.3 ? C29 PC1 901 E 1 
HETATM 25 C C2A PC1 . . . L 5 143.646 152.113 122.495 1 34.69 ? C2A PC1 901 E 1 
HETATM 26 C C2B PC1 . . . L 5 143.554 151.242 123.747 1 35.61 ? C2B PC1 901 E 1 
HETATM 27 C C2C PC1 . . . L 5 144.907 150.636 124.104 1 30.27 ? C2C PC1 901 E 1 
HETATM 28 C C2D PC1 . . . L 5 144.696 149.591 125.198 1 30.31 ? C2D PC1 901 E 1 
HETATM 29 C C2E PC1 . . . L 5 145.748 148.49 125.086 1 31.96 ? C2E PC1 901 E 1 
HETATM 30 C C2F PC1 . . . L 5 145.809 147.969 123.651 1 30.64 ? C2F PC1 901 E 1 
HETATM 31 C C2G PC1 . . . L 5 147.07 147.13 123.463 1 35.91 ? C2G PC1 901 E 1 
HETATM 32 C C2H PC1 . . . L 5 147.274 146.83 121.98 1 36.66 ? C2H PC1 901 E 1 
HETATM 33 C C2I PC1 . . . L 5 146.252 145.798 121.517 1 30.61 ? C2I PC1 901 E 1 
HETATM 34 C C3 PC1 . . . L 5 136.969 151.458 112.301 1 35.51 ? C3 PC1 901 E 1 
HETATM 35 O O31 PC1 . . . L 5 138.353 151.595 112.164 1 40.93 ? O31 PC1 901 E 1 
HETATM 36 C C31 PC1 . . . L 5 139.066 150.407 112.357 1 41.4 ? C31 PC1 901 E 1 
HETATM 37 O O32 PC1 . . . L 5 139.233 149.665 111.449 1 43.97 ? O32 PC1 901 E 1 
HETATM 38 C C32 PC1 . . . L 5 139.635 150.07 113.731 1 32.02 ? C32 PC1 901 E 1 
HETATM 39 C C33 PC1 . . . L 5 141.021 150.695 113.862 1 27.84 ? C33 PC1 901 E 1 
HETATM 40 C C34 PC1 . . . L 5 142.038 149.616 114.22 1 28.48 ? C34 PC1 901 E 1 
HETATM 41 C C35 PC1 . . . L 5 142.682 149.95 115.562 1 22.26 ? C35 PC1 901 E 1 
HETATM 42 C C36 PC1 . . . L 5 143.382 151.303 115.469 1 25.74 ? C36 PC1 901 E 1 
HETATM 43 C C37 PC1 . . . L 5 144.358 151.454 116.631 1 30.94 ? C37 PC1 901 E 1 
HETATM 44 C C38 PC1 . . . L 5 144.927 152.869 116.629 1 21.75 ? C38 PC1 901 E 1 
HETATM 45 C C39 PC1 . . . L 5 146.163 152.915 117.522 1 22.25 ? C39 PC1 901 E 1 
HETATM 46 C C3A PC1 . . . L 5 146.88 154.245 117.311 1 25.24 ? C3A PC1 901 E 1 
HETATM 47 C C3B PC1 . . . L 5 148.314 154.156 117.825 1 27.85 ? C3B PC1 901 E 1 
HETATM 48 C C3C PC1 . . . L 5 148.489 155.172 118.948 1 24.05 ? C3C PC1 901 E 1 
HETATM 49 C C3D PC1 . . . L 5 149.852 155.003 119.611 1 24.81 ? C3D PC1 901 E 1 
HETATM 50 C C3E PC1 . . . L 5 149.916 155.884 120.858 1 24.31 ? C3E PC1 901 E 1 
HETATM 51 C C3F PC1 . . . L 5 149.542 157.317 120.49 1 22.86 ? C3F PC1 901 E 1 
HETATM 52 C C3G PC1 . . . L 5 150.599 158.281 121.021 1 25.15 ? C3G PC1 901 E 1 
HETATM 53 C C3H PC1 . . . L 5 150.621 158.235 122.545 1 33.01 ? C3H PC1 901 E 1 
HETATM 54 C C3I PC1 . . . L 5 151.115 159.576 123.077 1 36.36 ? C3I PC1 901 E 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           54 
#