data_7YTL
#
_model_server_result.job_id            wdbEm92jP7o5FPeoxzoofw 
_model_server_result.datetime_utc      '2024-10-11 10:17:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ytl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7YTL 
#
_exptl.entry_id    7YTL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7YTL 
_cell.length_a            113.714 
_cell.length_b            113.714 
_cell.length_c            125.662 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YTL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -56.857 98.479213 -20.943667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     7YTL 
_atom_sites.fract_transf_matrix[1][1]    0.008794 
_atom_sites.fract_transf_matrix[1][2]    0.005077 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007958 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 401 500 FAD FAD . 
C 3 UQ1 A 1 402 503 UQ1 UQ1 . 
D 4 HOH A 1 501 3 HOH HOH . 
D 4 HOH A 2 502 19 HOH HOH . 
D 4 HOH A 3 503 22 HOH HOH . 
D 4 HOH A 4 504 17 HOH HOH . 
D 4 HOH A 5 505 4 HOH HOH . 
D 4 HOH A 6 506 1 HOH HOH . 
D 4 HOH A 7 507 11 HOH HOH . 
D 4 HOH A 8 508 7 HOH HOH . 
D 4 HOH A 9 509 6 HOH HOH . 
D 4 HOH A 10 510 26 HOH HOH . 
D 4 HOH A 11 511 24 HOH HOH . 
D 4 HOH A 12 512 23 HOH HOH . 
D 4 HOH A 13 513 16 HOH HOH . 
D 4 HOH A 14 514 10 HOH HOH . 
D 4 HOH A 15 515 25 HOH HOH . 
D 4 HOH A 16 516 15 HOH HOH . 
D 4 HOH A 17 517 28 HOH HOH . 
D 4 HOH A 18 518 20 HOH HOH . 
D 4 HOH A 19 519 2 HOH HOH . 
D 4 HOH A 20 520 21 HOH HOH . 
D 4 HOH A 21 521 27 HOH HOH . 
D 4 HOH A 22 522 12 HOH HOH . 
D 4 HOH A 23 523 18 HOH HOH . 
D 4 HOH A 24 524 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -9.667 33.317 -6.708 1 37.42 ? PA FAD 401 A 1 
HETATM 2 O O1A FAD . . . B 2 -11.077 33.16 -6.306 1 35.59 ? O1A FAD 401 A 1 
HETATM 3 O O2A FAD . . . B 2 -8.814 34.319 -5.929 1 41.18 ? O2A FAD 401 A 1 
HETATM 4 O O5B FAD . . . B 2 -9.073 31.895 -6.721 1 28.72 ? O5B FAD 401 A 1 
HETATM 5 C C5B FAD . . . B 2 -7.706 31.672 -7.115 1 36.52 ? C5B FAD 401 A 1 
HETATM 6 C C4B FAD . . . B 2 -7.285 30.29 -6.699 1 37.93 ? C4B FAD 401 A 1 
HETATM 7 O O4B FAD . . . B 2 -6.018 29.972 -7.325 1 37.61 ? O4B FAD 401 A 1 
HETATM 8 C C3B FAD . . . B 2 -7.091 30.084 -5.195 1 33.88 ? C3B FAD 401 A 1 
HETATM 9 O O3B FAD . . . B 2 -7.859 28.991 -4.702 1 35.5 ? O3B FAD 401 A 1 
HETATM 10 C C2B FAD . . . B 2 -5.596 29.763 -5.062 1 37.27 ? C2B FAD 401 A 1 
HETATM 11 O O2B FAD . . . B 2 -5.379 28.803 -4.037 1 36.79 ? O2B FAD 401 A 1 
HETATM 12 C C1B FAD . . . B 2 -5.282 29.181 -6.434 1 32 ? C1B FAD 401 A 1 
HETATM 13 N N9A FAD . . . B 2 -3.883 29.285 -6.791 1 36.51 ? N9A FAD 401 A 1 
HETATM 14 C C8A FAD . . . B 2 -3.193 30.44 -7.037 1 38.89 ? C8A FAD 401 A 1 
HETATM 15 N N7A FAD . . . B 2 -1.928 30.254 -7.33 1 36.59 ? N7A FAD 401 A 1 
HETATM 16 C C5A FAD . . . B 2 -1.783 28.88 -7.298 1 32.79 ? C5A FAD 401 A 1 
HETATM 17 C C6A FAD . . . B 2 -0.675 28.041 -7.507 1 35.29 ? C6A FAD 401 A 1 
HETATM 18 N N6A FAD . . . B 2 0.541 28.493 -7.836 1 32.18 ? N6A FAD 401 A 1 
HETATM 19 N N1A FAD . . . B 2 -0.869 26.709 -7.408 1 35.18 ? N1A FAD 401 A 1 
HETATM 20 C C2A FAD . . . B 2 -2.085 26.261 -7.088 1 37.38 ? C2A FAD 401 A 1 
HETATM 21 N N3A FAD . . . B 2 -3.201 26.955 -6.85 1 36.08 ? N3A FAD 401 A 1 
HETATM 22 C C4A FAD . . . B 2 -2.982 28.264 -6.974 1 35.93 ? C4A FAD 401 A 1 
HETATM 23 N N1 FAD . . . B 2 -16.121 40.079 -6.06 1 46.98 ? N1 FAD 401 A 1 
HETATM 24 C C2 FAD . . . B 2 -17.442 40.051 -6.411 1 51.59 ? C2 FAD 401 A 1 
HETATM 25 O O2 FAD . . . B 2 -17.808 39.72 -7.542 1 51.56 ? O2 FAD 401 A 1 
HETATM 26 N N3 FAD . . . B 2 -18.407 40.41 -5.488 1 54.34 ? N3 FAD 401 A 1 
HETATM 27 C C4 FAD . . . B 2 -18.175 40.81 -4.197 1 55.01 ? C4 FAD 401 A 1 
HETATM 28 O O4 FAD . . . B 2 -19.114 41.094 -3.457 1 60.36 ? O4 FAD 401 A 1 
HETATM 29 C C4X FAD . . . B 2 -16.774 40.826 -3.831 1 50.34 ? C4X FAD 401 A 1 
HETATM 30 N N5 FAD . . . B 2 -16.474 41.177 -2.629 1 53.39 ? N5 FAD 401 A 1 
HETATM 31 C C5X FAD . . . B 2 -15.141 41.196 -2.268 1 52.59 ? C5X FAD 401 A 1 
HETATM 32 C C6 FAD . . . B 2 -14.814 41.572 -0.968 1 50.74 ? C6 FAD 401 A 1 
HETATM 33 C C7 FAD . . . B 2 -13.491 41.622 -0.553 1 53.97 ? C7 FAD 401 A 1 
HETATM 34 C C7M FAD . . . B 2 -13.178 42.048 0.856 1 53.45 ? C7M FAD 401 A 1 
HETATM 35 C C8 FAD . . . B 2 -12.466 41.276 -1.452 1 58.25 ? C8 FAD 401 A 1 
HETATM 36 C C8M FAD . . . B 2 -11.019 41.311 -1.029 1 52.56 ? C8M FAD 401 A 1 
HETATM 37 C C9 FAD . . . B 2 -12.791 40.893 -2.753 1 50.76 ? C9 FAD 401 A 1 
HETATM 38 C C9A FAD . . . B 2 -14.117 40.851 -3.166 1 50.65 ? C9A FAD 401 A 1 
HETATM 39 N N10 FAD . . . B 2 -14.489 40.47 -4.474 1 52.37 ? N10 FAD 401 A 1 
HETATM 40 C C10 FAD . . . B 2 -15.817 40.434 -4.834 1 47.1 ? C10 FAD 401 A 1 
HETATM 41 C C1' FAD . . . B 2 -13.47 40.056 -5.468 1 46.9 ? C1' FAD 401 A 1 
HETATM 42 C C2' FAD . . . B 2 -13.344 38.535 -5.57 1 44.22 ? C2' FAD 401 A 1 
HETATM 43 O O2' FAD . . . B 2 -12.993 37.952 -4.315 1 48.44 ? O2' FAD 401 A 1 
HETATM 44 C C3' FAD . . . B 2 -12.261 38.151 -6.575 1 40.17 ? C3' FAD 401 A 1 
HETATM 45 O O3' FAD . . . B 2 -12.333 38.998 -7.712 1 44.88 ? O3' FAD 401 A 1 
HETATM 46 C C4' FAD . . . B 2 -12.446 36.704 -7.039 1 42.23 ? C4' FAD 401 A 1 
HETATM 47 O O4' FAD . . . B 2 -12.131 35.76 -6.009 1 41.61 ? O4' FAD 401 A 1 
HETATM 48 C C5' FAD . . . B 2 -11.68 36.357 -8.293 1 38.48 ? C5' FAD 401 A 1 
HETATM 49 O O5' FAD . . . B 2 -11.786 34.936 -8.505 1 41.19 ? O5' FAD 401 A 1 
HETATM 50 P P FAD . . . B 2 -10.688 34.14 -9.301 1 30.55 ? P FAD 401 A 1 
HETATM 51 O O1P FAD . . . B 2 -9.997 35.06 -10.316 1 39.93 ? O1P FAD 401 A 1 
HETATM 52 O O2P FAD . . . B 2 -11.318 32.929 -9.839 1 36.47 ? O2P FAD 401 A 1 
HETATM 53 O O3P FAD . . . B 2 -9.568 33.756 -8.227 1 38.47 ? O3P FAD 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           53 
#