data_7YTL # _model_server_result.job_id 5aaz1IIYwsrN5vq2zUnSUA _model_server_result.datetime_utc '2024-10-11 10:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ytl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7YTL # _exptl.entry_id 7YTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YTL _cell.length_a 113.714 _cell.length_b 113.714 _cell.length_c 125.662 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -56.857 98.479213 -20.943667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 449 n n C1 C2 UQ1 sing 450 n n C1 C6 UQ1 sing 451 n n C2 O2 UQ1 sing 452 n n C2 C3 UQ1 doub 453 n n O2 CM2 UQ1 sing 454 n n CM2 HM21 UQ1 sing 455 n n CM2 HM22 UQ1 sing 456 n n CM2 HM23 UQ1 sing 457 n n C3 O3 UQ1 sing 458 n n C3 C4 UQ1 sing 459 n n O3 CM3 UQ1 sing 460 n n CM3 HM31 UQ1 sing 461 n n CM3 HM32 UQ1 sing 462 n n CM3 HM33 UQ1 sing 463 n n C4 O4 UQ1 doub 464 n n C4 C5 UQ1 sing 465 n n C5 CM5 UQ1 sing 466 n n C5 C6 UQ1 doub 467 n n CM5 HM51 UQ1 sing 468 n n CM5 HM52 UQ1 sing 469 n n CM5 HM53 UQ1 sing 470 n n C6 C7 UQ1 sing 471 n n C7 C8 UQ1 sing 472 n n C7 H71 UQ1 sing 473 n n C7 H72 UQ1 sing 474 n n C8 C9 UQ1 doub 475 n n C8 H8 UQ1 sing 476 n n C9 C10 UQ1 sing 477 n n C9 C11 UQ1 sing 478 n n C10 H101 UQ1 sing 479 n n C10 H102 UQ1 sing 480 n n C10 H103 UQ1 sing 481 n n C11 H111 UQ1 sing 482 n n C11 H112 UQ1 sing 483 n n C11 H113 UQ1 sing 484 n n # _atom_sites.entry_id 7YTL _atom_sites.fract_transf_matrix[1][1] 0.008794 _atom_sites.fract_transf_matrix[1][2] 0.005077 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 401 500 FAD FAD . C 3 UQ1 A 1 402 503 UQ1 UQ1 . D 4 HOH A 1 501 3 HOH HOH . D 4 HOH A 2 502 19 HOH HOH . D 4 HOH A 3 503 22 HOH HOH . D 4 HOH A 4 504 17 HOH HOH . D 4 HOH A 5 505 4 HOH HOH . D 4 HOH A 6 506 1 HOH HOH . D 4 HOH A 7 507 11 HOH HOH . D 4 HOH A 8 508 7 HOH HOH . D 4 HOH A 9 509 6 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 24 HOH HOH . D 4 HOH A 12 512 23 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 10 HOH HOH . D 4 HOH A 15 515 25 HOH HOH . D 4 HOH A 16 516 15 HOH HOH . D 4 HOH A 17 517 28 HOH HOH . D 4 HOH A 18 518 20 HOH HOH . D 4 HOH A 19 519 2 HOH HOH . D 4 HOH A 20 520 21 HOH HOH . D 4 HOH A 21 521 27 HOH HOH . D 4 HOH A 22 522 12 HOH HOH . D 4 HOH A 23 523 18 HOH HOH . D 4 HOH A 24 524 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . C 3 -22.644 36.556 -8.699 1 80.65 ? C1 UQ1 402 A 1 HETATM 2 O O1 UQ1 . . . C 3 -23.351 35.829 -9.317 1 81.2 ? O1 UQ1 402 A 1 HETATM 3 C C2 UQ1 . . . C 3 -21.465 35.979 -7.922 1 76.67 ? C2 UQ1 402 A 1 HETATM 4 O O2 UQ1 . . . C 3 -21.252 34.582 -8.012 1 79.37 ? O2 UQ1 402 A 1 HETATM 5 C CM2 UQ1 . . . C 3 -21.439 33.797 -6.861 1 78.44 ? CM2 UQ1 402 A 1 HETATM 6 C C3 UQ1 . . . C 3 -20.676 36.815 -7.23 1 75.79 ? C3 UQ1 402 A 1 HETATM 7 O O3 UQ1 . . . C 3 -19.573 36.318 -6.495 1 77.89 ? O3 UQ1 402 A 1 HETATM 8 C CM3 UQ1 . . . C 3 -19.678 36.433 -5.094 1 67.08 ? CM3 UQ1 402 A 1 HETATM 9 C C4 UQ1 . . . C 3 -20.969 38.336 -7.217 1 74.08 ? C4 UQ1 402 A 1 HETATM 10 O O4 UQ1 . . . C 3 -20.318 39.134 -6.615 1 73.15 ? O4 UQ1 402 A 1 HETATM 11 C C5 UQ1 . . . C 3 -22.149 38.887 -7.992 1 78.3 ? C5 UQ1 402 A 1 HETATM 12 C CM5 UQ1 . . . C 3 -22.398 40.391 -7.948 1 69.5 ? CM5 UQ1 402 A 1 HETATM 13 C C6 UQ1 . . . C 3 -22.921 38.062 -8.675 1 83.64 ? C6 UQ1 402 A 1 HETATM 14 C C7 UQ1 . . . C 3 -24.1 38.601 -9.463 1 85.94 ? C7 UQ1 402 A 1 HETATM 15 C C8 UQ1 . . . C 3 -25.317 38.782 -8.578 1 92.57 ? C8 UQ1 402 A 1 HETATM 16 C C9 UQ1 . . . C 3 -26.238 39.764 -9.283 1 101.39 ? C9 UQ1 402 A 1 HETATM 17 C C10 UQ1 . . . C 3 -27.655 39.672 -8.739 1 113.94 ? C10 UQ1 402 A 1 HETATM 18 C C11 UQ1 . . . C 3 -25.648 41.173 -9.361 1 94.83 ? C11 UQ1 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #