data_7YU3
#
_model_server_result.job_id            vN6NZhnv14wFNYDwA6l50Q 
_model_server_result.datetime_utc      '2024-11-23 10:25:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yu3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7YU3 
#
_exptl.entry_id    7YU3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              415.461 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YU3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 33 R CYS 24 1_555 D SG CYS 199 R CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 D SG CYS 197 R CYS 188 1_555 D SG CYS 204 R CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 D SG CYS 293 R CYS 284 1_555 D SG CYS 296 R CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C20 H34 N O6 P' 
_chem_comp.formula_weight    415.461 
_chem_comp.id                K6L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C4 K6L sing 171 n n 
C3 C2 K6L sing 172 n n 
C4 C5 K6L sing 173 n n 
C1 C2 K6L sing 174 n n 
C5 C6 K6L sing 175 n n 
C6 C7 K6L sing 176 n n 
C7 C8 K6L doub 177 n y 
C7 C12 K6L sing 178 n y 
C13 C12 K6L sing 179 n n 
C13 C14 K6L sing 180 n n 
C8 C9 K6L sing 181 n y 
C12 C11 K6L doub 182 n y 
C15 C16 K6L sing 183 n n 
C15 C14 K6L sing 184 n n 
C16 C17 K6L sing 185 n n 
C9 C10 K6L doub 186 n y 
C11 C10 K6L sing 187 n y 
C17 O1 K6L doub 188 n n 
C17 N1 K6L sing 189 n n 
N1 C18 K6L sing 190 n n 
O6 P1 K6L doub 191 n n 
O3 P1 K6L sing 192 n n 
O3 C20 K6L sing 193 n n 
O4 P1 K6L sing 194 n n 
P1 O5 K6L sing 195 n n 
C20 C18 K6L sing 196 n n 
C18 C19 K6L sing 197 n n 
C19 O2 K6L sing 198 n n 
N1 H1 K6L sing 199 n n 
C4 H2 K6L sing 200 n n 
C4 H3 K6L sing 201 n n 
C5 H4 K6L sing 202 n n 
C5 H5 K6L sing 203 n n 
C6 H6 K6L sing 204 n n 
C6 H7 K6L sing 205 n n 
C8 H8 K6L sing 206 n n 
C10 H9 K6L sing 207 n n 
C13 H10 K6L sing 208 n n 
C13 H11 K6L sing 209 n n 
C15 H12 K6L sing 210 n n 
C15 H13 K6L sing 211 n n 
C20 H14 K6L sing 212 n n 
C20 H15 K6L sing 213 n n 
C1 H16 K6L sing 214 n n 
C1 H17 K6L sing 215 n n 
C1 H18 K6L sing 216 n n 
C2 H19 K6L sing 217 n n 
C2 H20 K6L sing 218 n n 
C3 H21 K6L sing 219 n n 
C3 H22 K6L sing 220 n n 
C9 H23 K6L sing 221 n n 
C11 H24 K6L sing 222 n n 
C14 H25 K6L sing 223 n n 
C14 H26 K6L sing 224 n n 
C16 H27 K6L sing 225 n n 
C16 H28 K6L sing 226 n n 
C18 H29 K6L sing 227 n n 
C19 H30 K6L sing 228 n n 
C19 H31 K6L sing 229 n n 
O2 H32 K6L sing 230 n n 
O4 H33 K6L sing 231 n n 
O5 H34 K6L sing 232 n n 
#
_atom_sites.entry_id                     7YU3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           K6L 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       K6L 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 K6L . . . F 6 173.768 146.406 160.025 1 120.96 ? N1 K6L 401 R 1 
HETATM 2 C C4 K6L . . . F 6 171.406 151.322 152.925 1 125.78 ? C4 K6L 401 R 1 
HETATM 3 C C5 K6L . . . F 6 171.13 151.51 154.406 1 140.08 ? C5 K6L 401 R 1 
HETATM 4 C C6 K6L . . . F 6 170.32 150.399 155.027 1 163.26 ? C6 K6L 401 R 1 
HETATM 5 C C7 K6L . . . F 6 170.151 150.58 156.526 1 156.82 ? C7 K6L 401 R 1 
HETATM 6 C C8 K6L . . . F 6 169.087 151.348 156.995 1 145.3 ? C8 K6L 401 R 1 
HETATM 7 C C10 K6L . . . F 6 169.788 151.02 159.238 1 153.04 ? C10 K6L 401 R 1 
HETATM 8 C C13 K6L . . . F 6 172.195 149.141 156.967 1 153.37 ? C13 K6L 401 R 1 
HETATM 9 C C15 K6L . . . F 6 174.205 147.735 157.566 1 136.08 ? C15 K6L 401 R 1 
HETATM 10 C C17 K6L . . . F 6 173.361 145.75 158.941 1 113.07 ? C17 K6L 401 R 1 
HETATM 11 C C20 K6L . . . F 6 174.927 144.845 161.306 1 182.86 ? C20 K6L 401 R 1 
HETATM 12 C C1 K6L . . . F 6 174.275 148.757 153.24 1 138.12 ? C1 K6L 401 R 1 
HETATM 13 C C2 K6L . . . F 6 173.541 150.077 153.292 1 114.65 ? C2 K6L 401 R 1 
HETATM 14 C C3 K6L . . . F 6 172.211 150.105 152.601 1 114.97 ? C3 K6L 401 R 1 
HETATM 15 C C9 K6L . . . F 6 168.92 151.584 158.338 1 160.06 ? C9 K6L 401 R 1 
HETATM 16 C C11 K6L . . . F 6 170.828 150.23 158.797 1 143.36 ? C11 K6L 401 R 1 
HETATM 17 C C12 K6L . . . F 6 171.051 150.015 157.442 1 147.65 ? C12 K6L 401 R 1 
HETATM 18 C C14 K6L . . . F 6 173.347 148.949 157.916 1 154.2 ? C14 K6L 401 R 1 
HETATM 19 C C16 K6L . . . F 6 173.515 146.402 157.587 1 116.77 ? C16 K6L 401 R 1 
HETATM 20 O O1 K6L . . . F 6 172.864 144.628 159.034 1 102.23 ? O1 K6L 401 R 1 
HETATM 21 C C18 K6L . . . F 6 173.731 145.769 161.33 1 170.96 ? C18 K6L 401 R 1 
HETATM 22 C C19 K6L . . . F 6 173.799 146.79 162.457 1 194.2 ? C19 K6L 401 R 1 
HETATM 23 O O2 K6L . . . F 6 174.006 146.23 163.735 1 221.6 ? O2 K6L 401 R 1 
HETATM 24 O O3 K6L . . . F 6 174.586 143.538 160.808 1 180.48 ? O3 K6L 401 R 1 
HETATM 25 P P1 K6L . . . F 6 175.628 142.377 161.173 1 162.75 ? P1 K6L 401 R 1 
HETATM 26 O O4 K6L . . . F 6 176.974 143.083 161.075 1 130.35 ? O4 K6L 401 R 1 
HETATM 27 O O5 K6L . . . F 6 175.288 141.928 162.593 1 145.99 ? O5 K6L 401 R 1 
HETATM 28 O O6 K6L . . . F 6 175.452 141.26 160.159 1 141.76 ? O6 K6L 401 R 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#