data_7YU4 # _model_server_result.job_id 1je8eDOlb0ruPpnV3qbWKg _model_server_result.datetime_utc '2025-07-31 04:19:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7YU4 # _exptl.entry_id 7YU4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 415.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YU4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 24 1_555 A SG CYS 199 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 197 A CYS 188 1_555 A SG CYS 204 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 293 A CYS 284 1_555 A SG CYS 296 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C20 H34 N O6 P' _chem_comp.formula_weight 415.461 _chem_comp.id K6L _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 K6L sing 171 n n C3 C2 K6L sing 172 n n C4 C5 K6L sing 173 n n C1 C2 K6L sing 174 n n C5 C6 K6L sing 175 n n C6 C7 K6L sing 176 n n C7 C8 K6L doub 177 n y C7 C12 K6L sing 178 n y C13 C12 K6L sing 179 n n C13 C14 K6L sing 180 n n C8 C9 K6L sing 181 n y C12 C11 K6L doub 182 n y C15 C16 K6L sing 183 n n C15 C14 K6L sing 184 n n C16 C17 K6L sing 185 n n C9 C10 K6L doub 186 n y C11 C10 K6L sing 187 n y C17 O1 K6L doub 188 n n C17 N1 K6L sing 189 n n N1 C18 K6L sing 190 n n O6 P1 K6L doub 191 n n O3 P1 K6L sing 192 n n O3 C20 K6L sing 193 n n O4 P1 K6L sing 194 n n P1 O5 K6L sing 195 n n C20 C18 K6L sing 196 n n C18 C19 K6L sing 197 n n C19 O2 K6L sing 198 n n N1 H1 K6L sing 199 n n C4 H2 K6L sing 200 n n C4 H3 K6L sing 201 n n C5 H4 K6L sing 202 n n C5 H5 K6L sing 203 n n C6 H6 K6L sing 204 n n C6 H7 K6L sing 205 n n C8 H8 K6L sing 206 n n C10 H9 K6L sing 207 n n C13 H10 K6L sing 208 n n C13 H11 K6L sing 209 n n C15 H12 K6L sing 210 n n C15 H13 K6L sing 211 n n C20 H14 K6L sing 212 n n C20 H15 K6L sing 213 n n C1 H16 K6L sing 214 n n C1 H17 K6L sing 215 n n C1 H18 K6L sing 216 n n C2 H19 K6L sing 217 n n C2 H20 K6L sing 218 n n C3 H21 K6L sing 219 n n C3 H22 K6L sing 220 n n C9 H23 K6L sing 221 n n C11 H24 K6L sing 222 n n C14 H25 K6L sing 223 n n C14 H26 K6L sing 224 n n C16 H27 K6L sing 225 n n C16 H28 K6L sing 226 n n C18 H29 K6L sing 227 n n C19 H30 K6L sing 228 n n C19 H31 K6L sing 229 n n O2 H32 K6L sing 230 n n O4 H33 K6L sing 231 n n O5 H34 K6L sing 232 n n # _atom_sites.entry_id 7YU4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id K6L _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id K6L _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K6L . . . B 2 173.927 146.512 160.009 1 97.51 ? N1 K6L 401 A 1 HETATM 2 C C4 K6L . . . B 2 171.429 151.219 152.95 1 125.38 ? C4 K6L 401 A 1 HETATM 3 C C5 K6L . . . B 2 171.184 151.492 154.416 1 125.32 ? C5 K6L 401 A 1 HETATM 4 C C6 K6L . . . B 2 170.332 150.452 155.082 1 127.92 ? C6 K6L 401 A 1 HETATM 5 C C7 K6L . . . B 2 170.212 150.646 156.578 1 121.12 ? C7 K6L 401 A 1 HETATM 6 C C8 K6L . . . B 2 169.146 151.397 157.061 1 116.38 ? C8 K6L 401 A 1 HETATM 7 C C10 K6L . . . B 2 169.839 151.027 159.301 1 108.73 ? C10 K6L 401 A 1 HETATM 8 C C13 K6L . . . B 2 172.279 149.232 157.03 1 109.25 ? C13 K6L 401 A 1 HETATM 9 C C15 K6L . . . B 2 174.313 147.922 157.683 1 103.16 ? C15 K6L 401 A 1 HETATM 10 C C17 K6L . . . B 2 173.508 145.877 158.922 1 88.35 ? C17 K6L 401 A 1 HETATM 11 C C20 K6L . . . B 2 175.143 144.92 161.269 1 122.08 ? C20 K6L 401 A 1 HETATM 12 C C1 K6L . . . B 2 173.691 148.103 152.918 1 147.61 ? C1 K6L 401 A 1 HETATM 13 C C2 K6L . . . B 2 173.264 149.532 153.16 1 141.15 ? C2 K6L 401 A 1 HETATM 14 C C3 K6L . . . B 2 171.933 149.877 152.604 1 131.94 ? C3 K6L 401 A 1 HETATM 15 C C9 K6L . . . B 2 168.957 151.578 158.414 1 113.39 ? C9 K6L 401 A 1 HETATM 16 C C11 K6L . . . B 2 170.899 150.28 158.841 1 109.58 ? C11 K6L 401 A 1 HETATM 17 C C12 K6L . . . B 2 171.113 150.076 157.487 1 111.47 ? C12 K6L 401 A 1 HETATM 18 C C14 K6L . . . B 2 173.418 149.111 157.993 1 106.06 ? C14 K6L 401 A 1 HETATM 19 C C16 K6L . . . B 2 173.601 146.605 157.609 1 94.76 ? C16 K6L 401 A 1 HETATM 20 O O1 K6L . . . B 2 173.074 144.736 158.98 1 78.23 ? O1 K6L 401 A 1 HETATM 21 C C18 K6L . . . B 2 173.971 145.867 161.305 1 114.4 ? C18 K6L 401 A 1 HETATM 22 C C19 K6L . . . B 2 174.161 146.879 162.403 1 120.52 ? C19 K6L 401 A 1 HETATM 23 O O2 K6L . . . B 2 174.338 146.322 163.676 1 119.23 ? O2 K6L 401 A 1 HETATM 24 O O3 K6L . . . B 2 174.821 143.648 160.692 1 135.1 ? O3 K6L 401 A 1 HETATM 25 P P1 K6L . . . B 2 175.756 142.424 161.113 1 143.6 ? P1 K6L 401 A 1 HETATM 26 O O4 K6L . . . B 2 177.092 143.069 161.256 1 134.59 ? O4 K6L 401 A 1 HETATM 27 O O5 K6L . . . B 2 175.226 141.944 162.431 1 136.09 ? O5 K6L 401 A 1 HETATM 28 O O6 K6L . . . B 2 175.683 141.381 160.018 1 137.38 ? O6 K6L 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #