data_7YU5
#
_model_server_result.job_id            -YxQ-7LWXvydXm3x0qBzow 
_model_server_result.datetime_utc      '2024-11-21 22:38:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yu5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7YU5 
#
_exptl.entry_id    7YU5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              415.461 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YU5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YU5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 33 R CYS 24 1_555 D SG CYS 199 R CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 D SG CYS 197 R CYS 188 1_555 D SG CYS 204 R CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf3 D SG CYS 293 R CYS 284 1_555 D SG CYS 296 R CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C20 H34 N O6 P' 
_chem_comp.formula_weight    415.461 
_chem_comp.id                K6L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-2-[5-(2-hexylphenyl)pentanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C4 K6L sing 171 n n 
C3 C2 K6L sing 172 n n 
C4 C5 K6L sing 173 n n 
C1 C2 K6L sing 174 n n 
C5 C6 K6L sing 175 n n 
C6 C7 K6L sing 176 n n 
C7 C8 K6L doub 177 n y 
C7 C12 K6L sing 178 n y 
C13 C12 K6L sing 179 n n 
C13 C14 K6L sing 180 n n 
C8 C9 K6L sing 181 n y 
C12 C11 K6L doub 182 n y 
C15 C16 K6L sing 183 n n 
C15 C14 K6L sing 184 n n 
C16 C17 K6L sing 185 n n 
C9 C10 K6L doub 186 n y 
C11 C10 K6L sing 187 n y 
C17 O1 K6L doub 188 n n 
C17 N1 K6L sing 189 n n 
N1 C18 K6L sing 190 n n 
O6 P1 K6L doub 191 n n 
O3 P1 K6L sing 192 n n 
O3 C20 K6L sing 193 n n 
O4 P1 K6L sing 194 n n 
P1 O5 K6L sing 195 n n 
C20 C18 K6L sing 196 n n 
C18 C19 K6L sing 197 n n 
C19 O2 K6L sing 198 n n 
N1 H1 K6L sing 199 n n 
C4 H2 K6L sing 200 n n 
C4 H3 K6L sing 201 n n 
C5 H4 K6L sing 202 n n 
C5 H5 K6L sing 203 n n 
C6 H6 K6L sing 204 n n 
C6 H7 K6L sing 205 n n 
C8 H8 K6L sing 206 n n 
C10 H9 K6L sing 207 n n 
C13 H10 K6L sing 208 n n 
C13 H11 K6L sing 209 n n 
C15 H12 K6L sing 210 n n 
C15 H13 K6L sing 211 n n 
C20 H14 K6L sing 212 n n 
C20 H15 K6L sing 213 n n 
C1 H16 K6L sing 214 n n 
C1 H17 K6L sing 215 n n 
C1 H18 K6L sing 216 n n 
C2 H19 K6L sing 217 n n 
C2 H20 K6L sing 218 n n 
C3 H21 K6L sing 219 n n 
C3 H22 K6L sing 220 n n 
C9 H23 K6L sing 221 n n 
C11 H24 K6L sing 222 n n 
C14 H25 K6L sing 223 n n 
C14 H26 K6L sing 224 n n 
C16 H27 K6L sing 225 n n 
C16 H28 K6L sing 226 n n 
C18 H29 K6L sing 227 n n 
C19 H30 K6L sing 228 n n 
C19 H31 K6L sing 229 n n 
O2 H32 K6L sing 230 n n 
O4 H33 K6L sing 231 n n 
O5 H34 K6L sing 232 n n 
#
_atom_sites.entry_id                     7YU5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           K6L 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       K6L 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 K6L . . . F 6 172.985 146.959 160.036 1 150.94 ? N1 K6L 401 R 1 
HETATM 2 C C4 K6L . . . F 6 170.517 151.75 152.6 1 163.06 ? C4 K6L 401 R 1 
HETATM 3 C C5 K6L . . . F 6 170.246 151.967 154.08 1 204.9 ? C5 K6L 401 R 1 
HETATM 4 C C6 K6L . . . F 6 169.455 150.886 154.765 1 196.82 ? C6 K6L 401 R 1 
HETATM 5 C C7 K6L . . . F 6 169.337 151.145 156.255 1 188.29 ? C7 K6L 401 R 1 
HETATM 6 C C8 K6L . . . F 6 168.306 151.968 156.698 1 178.05 ? C8 K6L 401 R 1 
HETATM 7 C C10 K6L . . . F 6 168.994 151.735 158.957 1 166.92 ? C10 K6L 401 R 1 
HETATM 8 C C13 K6L . . . F 6 171.396 149.731 156.77 1 203.91 ? C13 K6L 401 R 1 
HETATM 9 C C15 K6L . . . F 6 173.337 148.233 157.529 1 159.12 ? C15 K6L 401 R 1 
HETATM 10 C C17 K6L . . . F 6 172.506 146.293 158.993 1 125.52 ? C17 K6L 401 R 1 
HETATM 11 C C20 K6L . . . F 6 174.101 145.395 161.395 1 203.93 ? C20 K6L 401 R 1 
HETATM 12 C C1 K6L . . . F 6 173.379 149.166 152.991 1 271.55 ? C1 K6L 401 R 1 
HETATM 13 C C2 K6L . . . F 6 172.676 150.503 153.004 1 235.52 ? C2 K6L 401 R 1 
HETATM 14 C C3 K6L . . . F 6 171.335 150.555 152.294 1 164.59 ? C3 K6L 401 R 1 
HETATM 15 C C9 K6L . . . F 6 168.141 152.267 158.032 1 177.13 ? C9 K6L 401 R 1 
HETATM 16 C C11 K6L . . . F 6 170.023 150.922 158.537 1 194.27 ? C11 K6L 401 R 1 
HETATM 17 C C12 K6L . . . F 6 170.241 150.626 157.192 1 193.61 ? C12 K6L 401 R 1 
HETATM 18 C C14 K6L . . . F 6 172.466 149.449 157.824 1 187.69 ? C14 K6L 401 R 1 
HETATM 19 C C16 K6L . . . F 6 172.638 146.899 157.608 1 127.34 ? C16 K6L 401 R 1 
HETATM 20 O O1 K6L . . . F 6 171.952 145.214 159.17 1 113.85 ? O1 K6L 401 R 1 
HETATM 21 C C18 K6L . . . F 6 172.957 146.375 161.373 1 194.95 ? C18 K6L 401 R 1 
HETATM 22 C C19 K6L . . . F 6 173.131 147.44 162.438 1 225.7 ? C19 K6L 401 R 1 
HETATM 23 O O2 K6L . . . F 6 173.29 146.921 163.739 1 239.82 ? O2 K6L 401 R 1 
HETATM 24 O O3 K6L . . . F 6 173.753 144.082 160.968 1 210.15 ? O3 K6L 401 R 1 
HETATM 25 P P1 K6L . . . F 6 174.779 142.891 161.359 1 181.53 ? P1 K6L 401 R 1 
HETATM 26 O O4 K6L . . . F 6 176.181 143.499 161.335 1 156.67 ? O4 K6L 401 R 1 
HETATM 27 O O5 K6L . . . F 6 174.352 142.418 162.726 1 174.01 ? O5 K6L 401 R 1 
HETATM 28 O O6 K6L . . . F 6 174.564 141.821 160.314 1 156.23 ? O6 K6L 401 R 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#