data_7YUD
#
_model_server_result.job_id            Jx8JDoRpVr2xpBA0dmI4jQ 
_model_server_result.datetime_utc      '2024-11-22 21:40:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    7YUD 
#
_exptl.entry_id    7YUD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              387.451 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 H CYS 26 1_555 A SG CYS 100 H CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 159 H CYS 159 1_555 A SG CYS 215 H CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 B SG CYS 25 L CYS 25 1_555 B SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 B SG CYS 136 L CYS 136 1_555 B SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 C SG CYS 22 N CYS 22 1_555 C SG CYS 97 N CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 E SG CYS 25 K CYS 22 1_555 E SG CYS 99 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C19 H34 N O5 P' 
_chem_comp.formula_weight    387.451 
_chem_comp.id                J89 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-2-azanyl-4-(4-octylphenyl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]butan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 P22 J89 sing 171 n n 
P22 O23 J89 doub 172 n n 
P22 O24 J89 sing 173 n n 
P22 O21 J89 sing 174 n n 
O19 C18 J89 sing 175 n n 
O21 C20 J89 sing 176 n n 
C18 C17 J89 sing 177 n n 
C20 C17 J89 sing 178 n n 
C17 C16 J89 sing 179 n n 
C17 N26 J89 sing 180 n n 
C16 C15 J89 sing 181 n n 
C11 C10 J89 doub 182 n y 
C11 C12 J89 sing 183 n y 
C15 C12 J89 sing 184 n n 
C10 C09 J89 sing 185 n y 
C12 C13 J89 doub 186 n y 
C09 C08 J89 sing 187 n n 
C09 C14 J89 doub 188 n y 
C13 C14 J89 sing 189 n y 
C08 C07 J89 sing 190 n n 
C07 C06 J89 sing 191 n n 
C01 C02 J89 sing 192 n n 
C02 C03 J89 sing 193 n n 
C06 C05 J89 sing 194 n n 
C04 C03 J89 sing 195 n n 
C04 C05 J89 sing 196 n n 
C01 H1 J89 sing 197 n n 
C01 H2 J89 sing 198 n n 
C01 H3 J89 sing 199 n n 
C02 H4 J89 sing 200 n n 
C03 H5 J89 sing 201 n n 
C04 H6 J89 sing 202 n n 
C04 H7 J89 sing 203 n n 
C05 H8 J89 sing 204 n n 
C05 H9 J89 sing 205 n n 
C06 H10 J89 sing 206 n n 
C07 H11 J89 sing 207 n n 
C08 H12 J89 sing 208 n n 
C08 H13 J89 sing 209 n n 
C10 H14 J89 sing 210 n n 
C11 H15 J89 sing 211 n n 
C13 H16 J89 sing 212 n n 
C14 H17 J89 sing 213 n n 
C15 H18 J89 sing 214 n n 
C16 H19 J89 sing 215 n n 
C18 H20 J89 sing 216 n n 
C18 H21 J89 sing 217 n n 
O19 H22 J89 sing 218 n n 
C20 H23 J89 sing 219 n n 
C20 H24 J89 sing 220 n n 
O24 H26 J89 sing 221 n n 
N26 H27 J89 sing 222 n n 
N26 H28 J89 sing 223 n n 
C02 H30 J89 sing 224 n n 
C03 H31 J89 sing 225 n n 
C06 H32 J89 sing 226 n n 
C07 H33 J89 sing 227 n n 
C15 H34 J89 sing 228 n n 
C16 H35 J89 sing 229 n n 
O25 H25 J89 sing 230 n n 
#
_atom_sites.entry_id                     7YUD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           J89 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     601 
_pdbx_nonpoly_scheme.pdb_mon_id       J89 
_pdbx_nonpoly_scheme.auth_mon_id      J89 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P22 J89 . . . F 6 139.619 141.935 120.287 1 61.66 ? P22 J89 601 R 1 
HETATM 2 C C01 J89 . . . F 6 154 145.184 115.394 1 61.66 ? C01 J89 601 R 1 
HETATM 3 C C02 J89 . . . F 6 153.062 144.034 115.736 1 61.66 ? C02 J89 601 R 1 
HETATM 4 C C03 J89 . . . F 6 151.774 144.479 116.441 1 61.66 ? C03 J89 601 R 1 
HETATM 5 C C04 J89 . . . F 6 151.11 143.425 117.325 1 61.66 ? C04 J89 601 R 1 
HETATM 6 C C05 J89 . . . F 6 150.234 142.433 116.6 1 61.66 ? C05 J89 601 R 1 
HETATM 7 C C06 J89 . . . F 6 150.7 140.972 116.63 1 61.66 ? C06 J89 601 R 1 
HETATM 8 C C07 J89 . . . F 6 150.605 140.267 117.995 1 61.66 ? C07 J89 601 R 1 
HETATM 9 C C08 J89 . . . F 6 149.848 138.93 118.077 1 61.66 ? C08 J89 601 R 1 
HETATM 10 C C09 J89 . . . F 6 148.598 138.862 118.915 1 61.66 ? C09 J89 601 R 1 
HETATM 11 C C10 J89 . . . F 6 148.523 138.328 120.212 1 61.66 ? C10 J89 601 R 1 
HETATM 12 C C11 J89 . . . F 6 147.339 138.29 120.964 1 61.66 ? C11 J89 601 R 1 
HETATM 13 C C12 J89 . . . F 6 146.127 138.79 120.478 1 61.66 ? C12 J89 601 R 1 
HETATM 14 C C13 J89 . . . F 6 146.219 139.326 119.191 1 61.66 ? C13 J89 601 R 1 
HETATM 15 C C14 J89 . . . F 6 147.402 139.359 118.45 1 61.66 ? C14 J89 601 R 1 
HETATM 16 C C15 J89 . . . F 6 144.804 138.77 121.244 1 61.66 ? C15 J89 601 R 1 
HETATM 17 C C16 J89 . . . F 6 143.518 138.378 120.497 1 61.66 ? C16 J89 601 R 1 
HETATM 18 C C17 J89 . . . F 6 142.166 139.028 120.985 1 61.66 ? C17 J89 601 R 1 
HETATM 19 C C18 J89 . . . F 6 141.11 137.957 121.356 1 61.66 ? C18 J89 601 R 1 
HETATM 20 O O19 J89 . . . F 6 139.965 138.599 121.801 1 61.66 ? O19 J89 601 R 1 
HETATM 21 C C20 J89 . . . F 6 141.486 139.943 119.762 1 61.66 ? C20 J89 601 R 1 
HETATM 22 O O21 J89 . . . F 6 140.198 140.201 119.986 1 61.66 ? O21 J89 601 R 1 
HETATM 23 O O23 J89 . . . F 6 138.157 141.899 119.881 1 61.66 ? O23 J89 601 R 1 
HETATM 24 O O24 J89 . . . F 6 139.899 142.031 121.765 1 61.66 -1 O24 J89 601 R 1 
HETATM 25 O O25 J89 . . . F 6 140.54 142.693 119.369 1 61.66 ? O25 J89 601 R 1 
HETATM 26 N N26 J89 . . . F 6 142.544 139.814 122.11 1 61.66 ? N26 J89 601 R 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#