data_7YUL
#
_model_server_result.job_id            aERt4HRWwhUsUQh2yAdpeA 
_model_server_result.datetime_utc      '2024-11-05 23:29:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    7YUL 
#
_exptl.entry_id    7YUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.051 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLYCOLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YUL 
_cell.length_a            69.092 
_cell.length_b            39.514 
_cell.length_c            43.719 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 39.514 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 B N3 DC 1 C DC 1 1_555 B N1 DG 12 C DG 12 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 1 C DC 1 1_555 B O6 DG 12 C DG 12 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 1 C DC 1 1_555 B N2 DG 12 C DG 12 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N3 DT 2 C DT 2 1_555 B N1 DA 11 C DA 11 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B O4 DT 2 C DT 2 1_555 B N6 DA 11 C DA 11 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N3 DC 3 C DC 3 1_555 B N1 DG 10 C DG 10 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N4 DC 3 C DC 3 1_555 B O6 DG 10 C DG 10 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B O2 DC 3 C DC 3 1_555 B N2 DG 10 C DG 10 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N3 DT 4 C DT 4 1_555 B N1 DA 9 C DA 9 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B O4 DT 4 C DT 4 1_555 B N6 DA 9 C DA 9 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N3 DC 5 C DC 5 1_555 B N1 DG 8 C DG 8 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N4 DC 5 C DC 5 1_555 B O6 DG 8 C DG 8 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B O2 DC 5 C DC 5 1_555 B N2 DG 8 C DG 8 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N1 DG 6 C DG 6 1_555 B N3 DC 7 C DC 7 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N2 DG 6 C DG 6 1_555 B O2 DC 7 C DC 7 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B O6 DG 6 C DG 6 1_555 B N4 DC 7 C DC 7 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N3 DC 7 C DC 7 1_555 B N1 DG 6 C DG 6 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N4 DC 7 C DC 7 1_555 B O6 DG 6 C DG 6 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B O2 DC 7 C DC 7 1_555 B N2 DG 6 C DG 6 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N1 DG 8 C DG 8 1_555 B N3 DC 5 C DC 5 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B N2 DG 8 C DG 8 1_555 B O2 DC 5 C DC 5 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B O6 DG 8 C DG 8 1_555 B N4 DC 5 C DC 5 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B N1 DA 9 C DA 9 1_555 B N3 DT 4 C DT 4 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B N6 DA 9 C DA 9 1_555 B O4 DT 4 C DT 4 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B N1 DG 10 C DG 10 1_555 B N3 DC 3 C DC 3 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B N2 DG 10 C DG 10 1_555 B O2 DC 3 C DC 3 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B O6 DG 10 C DG 10 1_555 B N4 DC 3 C DC 3 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 B N1 DA 11 C DA 11 1_555 B N3 DT 2 C DT 2 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 B N6 DA 11 C DA 11 1_555 B O4 DT 2 C DT 2 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 B N1 DG 12 C DG 12 1_555 B N3 DC 1 C DC 1 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 B N2 DG 12 C DG 12 1_555 B O2 DC 1 C DC 1 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 B O6 DG 12 C DG 12 1_555 B N4 DC 1 C DC 1 2_565 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H4 O3' 
_chem_comp.formula_weight    76.051 
_chem_comp.id                GOA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLYCOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYDROXYACETIC ACID;HYDROXYETHANOIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C CA GOA sing 278 n n 
C O GOA doub 279 n n 
C OXT GOA sing 280 n n 
CA O2 GOA sing 281 n n 
CA H22 GOA sing 282 n n 
CA H21 GOA sing 283 n n 
OXT HXT GOA sing 284 n n 
O2 H20 GOA sing 285 n n 
#
_atom_sites.entry_id                     7YUL 
_atom_sites.fract_transf_matrix[1][1]    0.014473 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025307 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOA C 1 101 101 GOA GOA . 
D 4 HOH A 1 301 51 HOH HOH . 
D 4 HOH A 2 302 59 HOH HOH . 
D 4 HOH A 3 303 105 HOH HOH . 
D 4 HOH A 4 304 76 HOH HOH . 
D 4 HOH A 5 305 36 HOH HOH . 
D 4 HOH A 6 306 100 HOH HOH . 
D 4 HOH A 7 307 34 HOH HOH . 
D 4 HOH A 8 308 130 HOH HOH . 
D 4 HOH A 9 309 89 HOH HOH . 
D 4 HOH A 10 310 131 HOH HOH . 
D 4 HOH A 11 311 47 HOH HOH . 
D 4 HOH A 12 312 4 HOH HOH . 
D 4 HOH A 13 313 52 HOH HOH . 
D 4 HOH A 14 314 93 HOH HOH . 
D 4 HOH A 15 315 48 HOH HOH . 
D 4 HOH A 16 316 8 HOH HOH . 
D 4 HOH A 17 317 26 HOH HOH . 
D 4 HOH A 18 318 53 HOH HOH . 
D 4 HOH A 19 319 1 HOH HOH . 
D 4 HOH A 20 320 45 HOH HOH . 
D 4 HOH A 21 321 41 HOH HOH . 
D 4 HOH A 22 322 81 HOH HOH . 
D 4 HOH A 23 323 2 HOH HOH . 
D 4 HOH A 24 324 135 HOH HOH . 
D 4 HOH A 25 325 77 HOH HOH . 
D 4 HOH A 26 326 5 HOH HOH . 
D 4 HOH A 27 327 6 HOH HOH . 
D 4 HOH A 28 328 25 HOH HOH . 
D 4 HOH A 29 329 119 HOH HOH . 
D 4 HOH A 30 330 74 HOH HOH . 
D 4 HOH A 31 331 65 HOH HOH . 
D 4 HOH A 32 332 127 HOH HOH . 
D 4 HOH A 33 333 27 HOH HOH . 
D 4 HOH A 34 334 28 HOH HOH . 
D 4 HOH A 35 335 11 HOH HOH . 
D 4 HOH A 36 336 94 HOH HOH . 
D 4 HOH A 37 337 37 HOH HOH . 
D 4 HOH A 38 338 43 HOH HOH . 
D 4 HOH A 39 339 17 HOH HOH . 
D 4 HOH A 40 340 62 HOH HOH . 
D 4 HOH A 41 341 57 HOH HOH . 
D 4 HOH A 42 342 101 HOH HOH . 
D 4 HOH A 43 343 129 HOH HOH . 
D 4 HOH A 44 344 32 HOH HOH . 
D 4 HOH A 45 345 90 HOH HOH . 
D 4 HOH A 46 346 109 HOH HOH . 
D 4 HOH A 47 347 68 HOH HOH . 
D 4 HOH A 48 348 92 HOH HOH . 
D 4 HOH A 49 349 49 HOH HOH . 
D 4 HOH A 50 350 140 HOH HOH . 
D 4 HOH A 51 351 38 HOH HOH . 
D 4 HOH A 52 352 79 HOH HOH . 
D 4 HOH A 53 353 9 HOH HOH . 
D 4 HOH A 54 354 78 HOH HOH . 
D 4 HOH A 55 355 10 HOH HOH . 
D 4 HOH A 56 356 61 HOH HOH . 
D 4 HOH A 57 357 20 HOH HOH . 
D 4 HOH A 58 358 3 HOH HOH . 
D 4 HOH A 59 359 99 HOH HOH . 
D 4 HOH A 60 360 18 HOH HOH . 
D 4 HOH A 61 361 83 HOH HOH . 
D 4 HOH A 62 362 67 HOH HOH . 
D 4 HOH A 63 363 66 HOH HOH . 
D 4 HOH A 64 364 63 HOH HOH . 
D 4 HOH A 65 365 82 HOH HOH . 
D 4 HOH A 66 366 123 HOH HOH . 
D 4 HOH A 67 367 122 HOH HOH . 
D 4 HOH A 68 368 39 HOH HOH . 
D 4 HOH A 69 369 124 HOH HOH . 
D 4 HOH A 70 370 12 HOH HOH . 
D 4 HOH A 71 371 138 HOH HOH . 
D 4 HOH A 72 372 121 HOH HOH . 
D 4 HOH A 73 373 16 HOH HOH . 
D 4 HOH A 74 374 13 HOH HOH . 
D 4 HOH A 75 375 128 HOH HOH . 
D 4 HOH A 76 376 110 HOH HOH . 
D 4 HOH A 77 377 132 HOH HOH . 
D 4 HOH A 78 378 102 HOH HOH . 
D 4 HOH A 79 379 137 HOH HOH . 
D 4 HOH A 80 380 85 HOH HOH . 
D 4 HOH A 81 381 95 HOH HOH . 
D 4 HOH A 82 382 115 HOH HOH . 
D 4 HOH A 83 383 73 HOH HOH . 
D 4 HOH A 84 384 114 HOH HOH . 
D 4 HOH A 85 385 54 HOH HOH . 
D 4 HOH A 86 386 50 HOH HOH . 
D 4 HOH A 87 387 98 HOH HOH . 
D 4 HOH A 88 388 84 HOH HOH . 
D 4 HOH A 89 389 97 HOH HOH . 
D 4 HOH A 90 390 104 HOH HOH . 
D 4 HOH A 91 391 136 HOH HOH . 
D 4 HOH A 92 392 120 HOH HOH . 
D 4 HOH A 93 393 112 HOH HOH . 
D 4 HOH A 94 394 44 HOH HOH . 
D 4 HOH A 95 395 118 HOH HOH . 
D 4 HOH A 96 396 134 HOH HOH . 
D 4 HOH A 97 397 87 HOH HOH . 
D 4 HOH A 98 398 40 HOH HOH . 
D 4 HOH A 99 399 80 HOH HOH . 
E 4 HOH C 1 201 23 HOH HOH . 
E 4 HOH C 2 202 75 HOH HOH . 
E 4 HOH C 3 203 60 HOH HOH . 
E 4 HOH C 4 204 30 HOH HOH . 
E 4 HOH C 5 205 116 HOH HOH . 
E 4 HOH C 6 206 21 HOH HOH . 
E 4 HOH C 7 207 133 HOH HOH . 
E 4 HOH C 8 208 107 HOH HOH . 
E 4 HOH C 9 209 56 HOH HOH . 
E 4 HOH C 10 210 35 HOH HOH . 
E 4 HOH C 11 211 42 HOH HOH . 
E 4 HOH C 12 212 33 HOH HOH . 
E 4 HOH C 13 213 126 HOH HOH . 
E 4 HOH C 14 214 7 HOH HOH . 
E 4 HOH C 15 215 64 HOH HOH . 
E 4 HOH C 16 216 22 HOH HOH . 
E 4 HOH C 17 217 46 HOH HOH . 
E 4 HOH C 18 218 24 HOH HOH . 
E 4 HOH C 19 219 55 HOH HOH . 
E 4 HOH C 20 220 31 HOH HOH . 
E 4 HOH C 21 221 86 HOH HOH . 
E 4 HOH C 22 222 14 HOH HOH . 
E 4 HOH C 23 223 15 HOH HOH . 
E 4 HOH C 24 224 29 HOH HOH . 
E 4 HOH C 25 225 19 HOH HOH . 
E 4 HOH C 26 226 108 HOH HOH . 
E 4 HOH C 27 227 117 HOH HOH . 
E 4 HOH C 28 228 70 HOH HOH . 
E 4 HOH C 29 229 91 HOH HOH . 
E 4 HOH C 30 230 103 HOH HOH . 
E 4 HOH C 31 231 69 HOH HOH . 
E 4 HOH C 32 232 58 HOH HOH . 
E 4 HOH C 33 233 106 HOH HOH . 
E 4 HOH C 34 234 88 HOH HOH . 
E 4 HOH C 35 235 72 HOH HOH . 
E 4 HOH C 36 236 139 HOH HOH . 
E 4 HOH C 37 237 125 HOH HOH . 
E 4 HOH C 38 238 96 HOH HOH . 
E 4 HOH C 39 239 113 HOH HOH . 
E 4 HOH C 40 240 71 HOH HOH . 
E 4 HOH C 41 241 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C GOA . . . C 3 6.716 23.144 21.818 1 20.68 ? C GOA 101 C 1 
HETATM 2 C CA GOA . . . C 3 7.72 23.694 20.823 1 19.51 ? CA GOA 101 C 1 
HETATM 3 O O GOA . . . C 3 6.474 21.997 21.517 1 35.07 ? O GOA 101 C 1 
HETATM 4 O OXT GOA . . . C 3 6.147 23.812 22.77 1 16.71 ? OXT GOA 101 C 1 
HETATM 5 O O2 GOA . . . C 3 7.084 24.685 20.027 1 16.05 ? O2 GOA 101 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#