data_7YVO # _model_server_result.job_id ZsbeREmCArVgzWg8snx7Gg _model_server_result.datetime_utc '2024-11-21 08:33:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1301}' # _entry.id 7YVO # _exptl.entry_id 7YVO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 37 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YVO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 GA N N ? 6 HA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N ? 6 MA N N ? 6 NA N N ? 6 OA N N ? 6 PA N N ? 6 QA N N ? 6 RA N N ? 6 SA N N ? 6 TA N N ? 6 UA N N ? 6 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 A CYS 131 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 291 A CYS 291 1_555 A SG CYS 301 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 336 A CYS 336 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 379 A CYS 379 1_555 A SG CYS 432 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 391 A CYS 391 1_555 A SG CYS 525 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 480 A CYS 480 1_555 A SG CYS 488 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 538 A CYS 538 1_555 A SG CYS 590 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 A SG CYS 617 A CYS 617 1_555 A SG CYS 649 A CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 662 A CYS 662 1_555 A SG CYS 671 A CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf10 A SG CYS 738 A CYS 738 1_555 A SG CYS 760 A CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf11 A SG CYS 743 A CYS 743 1_555 A SG CYS 749 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf12 A SG CYS 1032 A CYS 1032 1_555 A SG CYS 1043 A CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 A SG CYS 1082 A CYS 1082 1_555 A SG CYS 1126 A CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 B SG CYS 131 B CYS 131 1_555 B SG CYS 166 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 B SG CYS 291 B CYS 291 1_555 B SG CYS 301 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 B SG CYS 336 B CYS 336 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 B SG CYS 379 B CYS 379 1_555 B SG CYS 432 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf18 B SG CYS 391 B CYS 391 1_555 B SG CYS 525 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf19 B SG CYS 538 B CYS 538 1_555 B SG CYS 590 B CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf20 B SG CYS 617 B CYS 617 1_555 B SG CYS 649 B CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf21 B SG CYS 662 B CYS 662 1_555 B SG CYS 671 B CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf22 B SG CYS 738 B CYS 738 1_555 B SG CYS 760 B CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf23 B SG CYS 743 B CYS 743 1_555 B SG CYS 749 B CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf24 B SG CYS 1032 B CYS 1032 1_555 B SG CYS 1043 B CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf25 B SG CYS 1082 B CYS 1082 1_555 B SG CYS 1126 B CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 C SG CYS 131 C CYS 131 1_555 C SG CYS 166 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf27 C SG CYS 291 C CYS 291 1_555 C SG CYS 301 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf28 C SG CYS 336 C CYS 336 1_555 C SG CYS 361 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf29 C SG CYS 379 C CYS 379 1_555 C SG CYS 432 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf30 C SG CYS 391 C CYS 391 1_555 C SG CYS 525 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf31 C SG CYS 480 C CYS 480 1_555 C SG CYS 488 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf32 C SG CYS 538 C CYS 538 1_555 C SG CYS 590 C CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf33 C SG CYS 617 C CYS 617 1_555 C SG CYS 649 C CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf34 C SG CYS 662 C CYS 662 1_555 C SG CYS 671 C CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf35 C SG CYS 738 C CYS 738 1_555 C SG CYS 760 C CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf36 C SG CYS 743 C CYS 743 1_555 C SG CYS 749 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf37 C SG CYS 1032 C CYS 1032 1_555 C SG CYS 1043 C CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf38 C SG CYS 1082 C CYS 1082 1_555 C SG CYS 1126 C CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf39 D SG CYS 23 H CYS 23 1_555 D SG CYS 88 H CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf40 E SG CYS 22 I CYS 22 1_555 E SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf41 F SG CYS 23 J CYS 23 1_555 F SG CYS 88 J CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf42 G SG CYS 22 K CYS 22 1_555 G SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf43 H SG CYS 22 L CYS 22 1_555 H SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf44 I SG CYS 22 M CYS 22 1_555 I SG CYS 97 M CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf45 J SG CYS 22 N CYS 22 1_555 J SG CYS 89 N CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf46 K SG CYS 22 O CYS 22 1_555 K SG CYS 97 O CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7YVO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 6 NAG A 1 1301 1303 NAG NAG . M 6 NAG A 1 1302 1308 NAG NAG . N 6 NAG A 1 1303 1312 NAG NAG . O 6 NAG A 1 1304 1308 NAG NAG . P 6 NAG A 1 1305 1301 NAG NAG . Q 6 NAG A 1 1306 1304 NAG NAG . R 6 NAG A 1 1307 1305 NAG NAG . S 6 NAG A 1 1308 1306 NAG NAG . T 6 NAG A 1 1309 1307 NAG NAG . U 6 NAG A 1 1310 1309 NAG NAG . V 6 NAG A 1 1311 1310 NAG NAG . W 6 NAG A 1 1312 1311 NAG NAG . X 6 NAG B 1 1301 1303 NAG NAG . Y 6 NAG B 1 1302 1308 NAG NAG . Z 6 NAG B 1 1303 1312 NAG NAG . AA 6 NAG B 1 1304 1301 NAG NAG . BA 6 NAG B 1 1305 1302 NAG NAG . CA 6 NAG B 1 1306 1304 NAG NAG . DA 6 NAG B 1 1307 1305 NAG NAG . EA 6 NAG B 1 1308 1306 NAG NAG . FA 6 NAG B 1 1309 1307 NAG NAG . GA 6 NAG B 1 1310 1309 NAG NAG . HA 6 NAG B 1 1311 1310 NAG NAG . IA 6 NAG B 1 1312 1311 NAG NAG . JA 6 NAG C 1 1301 1306 NAG NAG . KA 6 NAG C 1 1302 1307 NAG NAG . LA 6 NAG C 1 1303 1301 NAG NAG . MA 6 NAG C 1 1304 1304 NAG NAG . NA 6 NAG C 1 1305 1305 NAG NAG . OA 6 NAG C 1 1306 1306 NAG NAG . PA 6 NAG C 1 1307 1307 NAG NAG . QA 6 NAG C 1 1308 1309 NAG NAG . RA 6 NAG C 1 1309 1310 NAG NAG . SA 6 NAG C 1 1310 1311 NAG NAG . TA 6 NAG C 1 1311 1303 NAG NAG . UA 6 NAG C 1 1312 1308 NAG NAG . VA 6 NAG C 1 1313 1312 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 6 219.66 240.547 187.887 1 166.92 ? C1 NAG 1301 A 1 HETATM 2 C C2 NAG . . . L 6 219.241 240.369 186.439 1 166.92 ? C2 NAG 1301 A 1 HETATM 3 C C3 NAG . . . L 6 219.987 239.197 185.817 1 166.92 ? C3 NAG 1301 A 1 HETATM 4 C C4 NAG . . . L 6 221.486 239.383 185.99 1 166.92 ? C4 NAG 1301 A 1 HETATM 5 C C5 NAG . . . L 6 221.818 239.619 187.457 1 166.92 ? C5 NAG 1301 A 1 HETATM 6 C C6 NAG . . . L 6 223.272 239.972 187.671 1 166.92 ? C6 NAG 1301 A 1 HETATM 7 C C7 NAG . . . L 6 216.94 241.213 186.329 1 166.92 ? C7 NAG 1301 A 1 HETATM 8 C C8 NAG . . . L 6 215.493 240.85 186.191 1 166.92 ? C8 NAG 1301 A 1 HETATM 9 N N2 NAG . . . L 6 217.804 240.192 186.319 1 166.92 ? N2 NAG 1301 A 1 HETATM 10 O O3 NAG . . . L 6 219.669 239.104 184.435 1 166.92 ? O3 NAG 1301 A 1 HETATM 11 O O4 NAG . . . L 6 222.159 238.207 185.556 1 166.92 ? O4 NAG 1301 A 1 HETATM 12 O O5 NAG . . . L 6 221.06 240.728 187.957 1 166.92 ? O5 NAG 1301 A 1 HETATM 13 O O6 NAG . . . L 6 223.499 241.366 187.51 1 166.92 ? O6 NAG 1301 A 1 HETATM 14 O O7 NAG . . . L 6 217.309 242.377 186.445 1 166.92 ? O7 NAG 1301 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 181 _model_server_stats.query_time_ms 1127 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #