data_7YVZ # _model_server_result.job_id 5CwlpEKR2lrnuG6VfsqVYQ _model_server_result.datetime_utc '2024-12-05 13:15:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7YVZ # _exptl.entry_id 7YVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YVZ _cell.length_a 37.798 _cell.length_b 37.798 _cell.length_c 82.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 40 1_555 A SG CYS 22 A CYS 40 7_555 ? B ? ? B ? ? ? ? ? ? ? 2.738 ? metalc ? metalc1 A SG CYS 49 A CYS 67 1_555 B FE1 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A SG CYS 51 A CYS 69 1_555 B FE1 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 60 A CYS 78 1_555 B FE2 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 A ND1 HIS 64 A HIS 82 1_555 B FE2 FES . A FES 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 7YVZ _atom_sites.fract_transf_matrix[1][1] 0.026456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 401 401 FES FES . C 3 HOH A 1 501 3 HOH HOH . C 3 HOH A 2 502 16 HOH HOH . C 3 HOH A 3 503 12 HOH HOH . C 3 HOH A 4 504 7 HOH HOH . C 3 HOH A 5 505 2 HOH HOH . C 3 HOH A 6 506 5 HOH HOH . C 3 HOH A 7 507 18 HOH HOH . C 3 HOH A 8 508 1 HOH HOH . C 3 HOH A 9 509 15 HOH HOH . C 3 HOH A 10 510 14 HOH HOH . C 3 HOH A 11 511 10 HOH HOH . C 3 HOH A 12 512 6 HOH HOH . C 3 HOH A 13 513 4 HOH HOH . C 3 HOH A 14 514 8 HOH HOH . C 3 HOH A 15 515 9 HOH HOH . C 3 HOH A 16 516 11 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 13 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . B 2 1.156 11.395 -0.804 1 22.37 ? FE1 FES 401 A 1 HETATM 2 FE FE2 FES . . . B 2 -0.753 11.28 -2.639 1 24.16 ? FE2 FES 401 A 1 HETATM 3 S S1 FES . . . B 2 1.092 10.026 -2.531 1 21.39 ? S1 FES 401 A 1 HETATM 4 S S2 FES . . . B 2 -0.695 12.581 -0.82 1 22.35 ? S2 FES 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #