data_7YW2 # _model_server_result.job_id Qlg2nBT4sl6XQ153XI9YAw _model_server_result.datetime_utc '2024-11-15 06:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 7YW2 # _exptl.entry_id 7YW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YW2 _cell.length_a 65.585 _cell.length_b 65.585 _cell.length_c 148.459 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 7YW2 _atom_sites.fract_transf_matrix[1][1] 0.015247 _atom_sites.fract_transf_matrix[1][2] 0.008803 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HQG A 1 300 300 HQG HQG . C 3 GOL A 1 301 301 GOL LIG . D 4 PO4 A 1 302 302 PO4 PO4 . E 5 EPE A 1 303 303 EPE EPE . F 3 GOL A 1 304 304 GOL LIG . G 3 GOL A 1 305 305 GOL LIG . H 6 GLY A 1 306 306 GLY GLY . I 6 GLY A 1 307 307 GLY GLY . J 6 GLY A 1 308 308 GLY GLY . K 6 GLY A 1 309 309 GLY GLY . L 6 GLY A 1 310 310 GLY GLY . M 6 GLY A 1 311 311 GLY GLY . N 3 GOL A 1 312 312 GOL LIG . O 7 SOR A 1 313 313 SOR SOR . P 7 SOR A 1 314 314 SOR SOR . Q 6 GLY A 1 315 315 GLY GLY . R 6 GLY A 1 316 316 GLY GLY . S 6 GLY A 1 317 317 GLY GLY . T 6 GLY A 1 318 318 GLY GLY . U 8 HOH A 1 401 77 HOH HOH . U 8 HOH A 2 402 30 HOH HOH . U 8 HOH A 3 403 10 HOH HOH . U 8 HOH A 4 404 54 HOH HOH . U 8 HOH A 5 405 43 HOH HOH . U 8 HOH A 6 406 22 HOH HOH . U 8 HOH A 7 407 93 HOH HOH . U 8 HOH A 8 408 33 HOH HOH . U 8 HOH A 9 409 23 HOH HOH . U 8 HOH A 10 410 59 HOH HOH . U 8 HOH A 11 411 56 HOH HOH . U 8 HOH A 12 412 81 HOH HOH . U 8 HOH A 13 413 9 HOH HOH . U 8 HOH A 14 414 46 HOH HOH . U 8 HOH A 15 415 21 HOH HOH . U 8 HOH A 16 416 2 HOH HOH . U 8 HOH A 17 417 40 HOH HOH . U 8 HOH A 18 418 7 HOH HOH . U 8 HOH A 19 419 26 HOH HOH . U 8 HOH A 20 420 89 HOH HOH . U 8 HOH A 21 421 3 HOH HOH . U 8 HOH A 22 422 34 HOH HOH . U 8 HOH A 23 423 19 HOH HOH . U 8 HOH A 24 424 11 HOH HOH . U 8 HOH A 25 425 70 HOH HOH . U 8 HOH A 26 426 47 HOH HOH . U 8 HOH A 27 427 88 HOH HOH . U 8 HOH A 28 428 4 HOH HOH . U 8 HOH A 29 429 51 HOH HOH . U 8 HOH A 30 430 82 HOH HOH . U 8 HOH A 31 431 5 HOH HOH . U 8 HOH A 32 432 41 HOH HOH . U 8 HOH A 33 433 53 HOH HOH . U 8 HOH A 34 434 28 HOH HOH . U 8 HOH A 35 435 29 HOH HOH . U 8 HOH A 36 436 1 HOH HOH . U 8 HOH A 37 437 24 HOH HOH . U 8 HOH A 38 438 58 HOH HOH . U 8 HOH A 39 439 61 HOH HOH . U 8 HOH A 40 440 13 HOH HOH . U 8 HOH A 41 441 12 HOH HOH . U 8 HOH A 42 442 69 HOH HOH . U 8 HOH A 43 443 16 HOH HOH . U 8 HOH A 44 444 38 HOH HOH . U 8 HOH A 45 445 25 HOH HOH . U 8 HOH A 46 446 37 HOH HOH . U 8 HOH A 47 447 8 HOH HOH . U 8 HOH A 48 448 6 HOH HOH . U 8 HOH A 49 449 20 HOH HOH . U 8 HOH A 50 450 49 HOH HOH . U 8 HOH A 51 451 52 HOH HOH . U 8 HOH A 52 452 73 HOH HOH . U 8 HOH A 53 453 45 HOH HOH . U 8 HOH A 54 454 36 HOH HOH . U 8 HOH A 55 455 71 HOH HOH . U 8 HOH A 56 456 17 HOH HOH . U 8 HOH A 57 457 35 HOH HOH . U 8 HOH A 58 458 62 HOH HOH . U 8 HOH A 59 459 72 HOH HOH . U 8 HOH A 60 460 14 HOH HOH . U 8 HOH A 61 461 63 HOH HOH . U 8 HOH A 62 462 44 HOH HOH . U 8 HOH A 63 463 84 HOH HOH . U 8 HOH A 64 464 90 HOH HOH . U 8 HOH A 65 465 87 HOH HOH . U 8 HOH A 66 466 83 HOH HOH . U 8 HOH A 67 467 15 HOH HOH . U 8 HOH A 68 468 32 HOH HOH . U 8 HOH A 69 469 92 HOH HOH . U 8 HOH A 70 470 55 HOH HOH . U 8 HOH A 71 471 86 HOH HOH . U 8 HOH A 72 472 42 HOH HOH . U 8 HOH A 73 473 67 HOH HOH . U 8 HOH A 74 474 66 HOH HOH . U 8 HOH A 75 475 78 HOH HOH . U 8 HOH A 76 476 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 5 -27.95 -7.755 30.173 0.13 48.91 ? N1 EPE 303 A 1 HETATM 2 C C2 EPE . . . E 5 -29.397 -7.87 30.257 1 48.86 ? C2 EPE 303 A 1 HETATM 3 C C3 EPE . . . E 5 -29.932 -9.306 30.309 0.85 49.15 ? C3 EPE 303 A 1 HETATM 4 N N4 EPE . . . E 5 -28.929 -10.308 30.039 0.33 48.7 ? N4 EPE 303 A 1 HETATM 5 C C5 EPE . . . E 5 -27.867 -10.157 31.016 0.77 48.3 ? C5 EPE 303 A 1 HETATM 6 C C6 EPE . . . E 5 -27.186 -8.781 30.877 1 48.84 ? C6 EPE 303 A 1 HETATM 7 C C7 EPE . . . E 5 -29.544 -11.633 30.065 0.92 49.08 ? C7 EPE 303 A 1 HETATM 8 C C8 EPE . . . E 5 -30.767 -11.617 29.129 0.85 50.7 ? C8 EPE 303 A 1 HETATM 9 O O8 EPE . . . E 5 -31.58 -12.742 29.367 0.82 52.05 ? O8 EPE 303 A 1 HETATM 10 C C9 EPE . . . E 5 -27.562 -7.703 28.766 0.64 49.39 ? C9 EPE 303 A 1 HETATM 11 C C10 EPE . . . E 5 -28.37 -6.621 28.048 1 49.54 ? C10 EPE 303 A 1 HETATM 12 S S EPE . . . E 5 -29.536 -7.395 26.885 0.85 49.86 ? S EPE 303 A 1 HETATM 13 O O1S EPE . . . E 5 -30.768 -6.531 26.727 1 50.39 -1 O1S EPE 303 A 1 HETATM 14 O O2S EPE . . . E 5 -28.889 -7.758 25.578 0.8 50.2 ? O2S EPE 303 A 1 HETATM 15 O O3S EPE . . . E 5 -29.928 -8.774 27.357 0.78 50 ? O3S EPE 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #