data_7YW4 # _model_server_result.job_id LohEeMzAWSUFj7E7lhXnOQ _model_server_result.datetime_utc '2025-07-04 18:20:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7YW4 # _exptl.entry_id 7YW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YW4 _cell.length_a 41.672 _cell.length_b 41.672 _cell.length_c 129.086 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7YW4 _atom_sites.fract_transf_matrix[1][1] 0.023997 _atom_sites.fract_transf_matrix[1][2] 0.013855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 TAR A 1 302 302 TAR TAR . D 4 HOH A 1 401 14 HOH HOH . D 4 HOH A 2 402 18 HOH HOH . D 4 HOH A 3 403 12 HOH HOH . D 4 HOH A 4 404 1 HOH HOH . D 4 HOH A 5 405 22 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 21 HOH HOH . D 4 HOH A 8 408 5 HOH HOH . D 4 HOH A 9 409 17 HOH HOH . D 4 HOH A 10 410 8 HOH HOH . D 4 HOH A 11 411 4 HOH HOH . D 4 HOH A 12 412 7 HOH HOH . D 4 HOH A 13 413 10 HOH HOH . D 4 HOH A 14 414 13 HOH HOH . D 4 HOH A 15 415 19 HOH HOH . D 4 HOH A 16 416 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 7.43 22.356 58.147 0.4 70.11 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 7.107 20.916 57.962 1 57.68 -1 O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 8.125 22.801 59.376 1 58.01 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 8.258 22.895 56.898 1 63.67 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 7.838 22.575 55.564 1 51.64 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 8.035 23.8 54.714 0.97 53.51 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 7.968 23.433 53.317 0.81 50.41 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 6.995 24.907 54.911 1 49.6 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 7.64 26.164 54.934 0.96 49.13 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 6.111 24.785 53.673 0.38 49.43 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 5.522 26.028 53.368 0.91 49.51 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 7.139 24.339 52.642 1 49.12 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 6.575 23.675 51.479 0.61 48.13 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 5.375 23.029 51.419 1 47.14 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 5.113 22.534 50.243 0.84 46.88 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 6.211 22.868 49.475 0.83 47.43 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 6.536 22.621 48.132 1 47.46 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 5.755 21.963 47.294 1 46.77 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 7.712 23.091 47.678 1 48.01 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 8.502 23.763 48.522 0 47.61 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 8.297 24.052 49.802 1 47.59 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 7.122 23.574 50.226 0.75 48.26 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 6.078 23.192 58.038 0.64 58.17 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 5.609 24.406 58.95 0.58 62.15 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 4.131 24.526 58.89 0.53 59.1 -1 O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 6.44 25.588 58.618 1 58.86 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 6.043 23.875 60.386 1 84.37 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 5.011 23.344 61.24 0.14 70.77 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 5.127 23.959 62.612 1 72.44 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 4.391 25.199 62.628 0.63 73.46 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 4.51 23.12 63.735 1 76.31 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 5.081 23.459 64.99 1 79.01 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 3.044 23.544 63.623 0 69.34 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 2.287 23.29 64.794 0.65 64.06 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 3.179 25.039 63.354 1 86.16 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 2.049 25.561 62.536 0 88.71 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 2.237 25.913 61.225 1 75.78 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 1.198 26.509 60.517 0 55.14 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 1.457 27.236 59.221 1 52.41 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 0.728 28.169 58.897 0.14 47.89 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 2.471 26.827 58.48 0.47 44.55 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 -0.082 26.424 61.029 0.98 49.61 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 -0.258 26.094 62.353 0 49.69 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 0.826 25.68 63.093 1 68.22 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #