data_7YWB
#
_model_server_result.job_id            I0DpcllA3-6zl3SDzD4zbw 
_model_server_result.datetime_utc      '2024-11-13 01:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ywb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":605}' 
#
_entry.id    7YWB 
#
_exptl.entry_id    7YWB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              149.153 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-METHYL-9H-PURIN-6-AMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7YWB 
_cell.length_a            80.53 
_cell.length_b            80.53 
_cell.length_c            113.88 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YWB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
#
_chem_comp.formula           'C6 H7 N5' 
_chem_comp.formula_weight    149.153 
_chem_comp.id                N6M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-METHYL-9H-PURIN-6-AMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N6-METHYL ADENINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C8 N6M sing 250 n y 
N9 C4 N6M sing 251 n y 
C8 N7 N6M doub 252 n y 
N7 C5 N6M sing 253 n y 
C5 C6 N6M sing 254 n y 
C5 C4 N6M doub 255 n y 
C6 N6 N6M sing 256 n n 
C6 N1 N6M doub 257 n y 
N1 C2 N6M sing 258 n y 
C2 N3 N6M doub 259 n y 
N3 C4 N6M sing 260 n y 
N9 H9 N6M sing 261 n n 
C8 H8 N6M sing 262 n n 
N6 H6 N6M sing 263 n n 
N6 C11 N6M sing 264 n n 
C11 H111 N6M sing 265 n n 
C11 H112 N6M sing 266 n n 
C11 H113 N6M sing 267 n n 
C2 H2 N6M sing 268 n n 
#
_atom_sites.entry_id                     7YWB 
_atom_sites.fract_transf_matrix[1][1]    0.012418 
_atom_sites.fract_transf_matrix[1][2]    0.007169 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014339 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008781 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 601 1 SO4 SO4 . 
D 2 SO4 A 1 602 2 SO4 SO4 . 
E 2 SO4 A 1 603 3 SO4 SO4 . 
F 2 SO4 A 1 604 6 SO4 SO4 . 
G 3 N6M A 1 605 601 N6M LIG . 
H 4 GOL A 1 606 603 GOL GOL . 
I 5 CL A 1 607 1 CL CL . 
J 3 N6M B 1 601 601 N6M LIG . 
K 4 GOL B 1 602 602 GOL GOL . 
L 4 GOL B 1 603 603 GOL GOL . 
M 4 GOL B 1 604 604 GOL GOL . 
N 2 SO4 B 1 605 4 SO4 SO4 . 
O 2 SO4 B 1 606 5 SO4 SO4 . 
P 6 HOH A 1 701 161 HOH HOH . 
P 6 HOH A 2 702 39 HOH HOH . 
P 6 HOH A 3 703 97 HOH HOH . 
P 6 HOH A 4 704 80 HOH HOH . 
P 6 HOH A 5 705 137 HOH HOH . 
P 6 HOH A 6 706 65 HOH HOH . 
P 6 HOH A 7 707 18 HOH HOH . 
P 6 HOH A 8 708 200 HOH HOH . 
P 6 HOH A 9 709 94 HOH HOH . 
P 6 HOH A 10 710 140 HOH HOH . 
P 6 HOH A 11 711 53 HOH HOH . 
P 6 HOH A 12 712 17 HOH HOH . 
P 6 HOH A 13 713 183 HOH HOH . 
P 6 HOH A 14 714 234 HOH HOH . 
P 6 HOH A 15 715 86 HOH HOH . 
P 6 HOH A 16 716 132 HOH HOH . 
P 6 HOH A 17 717 136 HOH HOH . 
P 6 HOH A 18 718 24 HOH HOH . 
P 6 HOH A 19 719 111 HOH HOH . 
P 6 HOH A 20 720 3 HOH HOH . 
P 6 HOH A 21 721 188 HOH HOH . 
P 6 HOH A 22 722 45 HOH HOH . 
P 6 HOH A 23 723 55 HOH HOH . 
P 6 HOH A 24 724 8 HOH HOH . 
P 6 HOH A 25 725 85 HOH HOH . 
P 6 HOH A 26 726 82 HOH HOH . 
P 6 HOH A 27 727 34 HOH HOH . 
P 6 HOH A 28 728 11 HOH HOH . 
P 6 HOH A 29 729 63 HOH HOH . 
P 6 HOH A 30 730 211 HOH HOH . 
P 6 HOH A 31 731 168 HOH HOH . 
P 6 HOH A 32 732 61 HOH HOH . 
P 6 HOH A 33 733 16 HOH HOH . 
P 6 HOH A 34 734 154 HOH HOH . 
P 6 HOH A 35 735 52 HOH HOH . 
P 6 HOH A 36 736 4 HOH HOH . 
P 6 HOH A 37 737 22 HOH HOH . 
P 6 HOH A 38 738 57 HOH HOH . 
P 6 HOH A 39 739 72 HOH HOH . 
P 6 HOH A 40 740 20 HOH HOH . 
P 6 HOH A 41 741 113 HOH HOH . 
P 6 HOH A 42 742 69 HOH HOH . 
P 6 HOH A 43 743 195 HOH HOH . 
P 6 HOH A 44 744 176 HOH HOH . 
P 6 HOH A 45 745 68 HOH HOH . 
P 6 HOH A 46 746 19 HOH HOH . 
P 6 HOH A 47 747 99 HOH HOH . 
P 6 HOH A 48 748 93 HOH HOH . 
P 6 HOH A 49 749 35 HOH HOH . 
P 6 HOH A 50 750 15 HOH HOH . 
P 6 HOH A 51 751 44 HOH HOH . 
P 6 HOH A 52 752 40 HOH HOH . 
P 6 HOH A 53 753 224 HOH HOH . 
P 6 HOH A 54 754 134 HOH HOH . 
P 6 HOH A 55 755 26 HOH HOH . 
P 6 HOH A 56 756 203 HOH HOH . 
P 6 HOH A 57 757 92 HOH HOH . 
P 6 HOH A 58 758 155 HOH HOH . 
P 6 HOH A 59 759 120 HOH HOH . 
P 6 HOH A 60 760 116 HOH HOH . 
P 6 HOH A 61 761 25 HOH HOH . 
P 6 HOH A 62 762 41 HOH HOH . 
P 6 HOH A 63 763 124 HOH HOH . 
P 6 HOH A 64 764 175 HOH HOH . 
P 6 HOH A 65 765 2 HOH HOH . 
P 6 HOH A 66 766 135 HOH HOH . 
P 6 HOH A 67 767 88 HOH HOH . 
P 6 HOH A 68 768 30 HOH HOH . 
P 6 HOH A 69 769 98 HOH HOH . 
P 6 HOH A 70 770 107 HOH HOH . 
P 6 HOH A 71 771 42 HOH HOH . 
P 6 HOH A 72 772 5 HOH HOH . 
P 6 HOH A 73 773 43 HOH HOH . 
P 6 HOH A 74 774 46 HOH HOH . 
P 6 HOH A 75 775 79 HOH HOH . 
P 6 HOH A 76 776 100 HOH HOH . 
P 6 HOH A 77 777 13 HOH HOH . 
P 6 HOH A 78 778 118 HOH HOH . 
P 6 HOH A 79 779 122 HOH HOH . 
P 6 HOH A 80 780 70 HOH HOH . 
P 6 HOH A 81 781 47 HOH HOH . 
P 6 HOH A 82 782 182 HOH HOH . 
P 6 HOH A 83 783 153 HOH HOH . 
P 6 HOH A 84 784 138 HOH HOH . 
P 6 HOH A 85 785 87 HOH HOH . 
P 6 HOH A 86 786 225 HOH HOH . 
P 6 HOH A 87 787 58 HOH HOH . 
P 6 HOH A 88 788 208 HOH HOH . 
P 6 HOH A 89 789 56 HOH HOH . 
P 6 HOH A 90 790 235 HOH HOH . 
P 6 HOH A 91 791 48 HOH HOH . 
P 6 HOH A 92 792 21 HOH HOH . 
P 6 HOH A 93 793 71 HOH HOH . 
P 6 HOH A 94 794 231 HOH HOH . 
P 6 HOH A 95 795 218 HOH HOH . 
P 6 HOH A 96 796 202 HOH HOH . 
P 6 HOH A 97 797 232 HOH HOH . 
P 6 HOH A 98 798 126 HOH HOH . 
P 6 HOH A 99 799 230 HOH HOH . 
P 6 HOH A 100 800 54 HOH HOH . 
P 6 HOH A 101 801 1 HOH HOH . 
P 6 HOH A 102 802 147 HOH HOH . 
P 6 HOH A 103 803 222 HOH HOH . 
P 6 HOH A 104 804 31 HOH HOH . 
P 6 HOH A 105 805 184 HOH HOH . 
P 6 HOH A 106 806 178 HOH HOH . 
P 6 HOH A 107 807 130 HOH HOH . 
P 6 HOH A 108 808 146 HOH HOH . 
P 6 HOH A 109 809 196 HOH HOH . 
P 6 HOH A 110 810 117 HOH HOH . 
P 6 HOH A 111 811 191 HOH HOH . 
P 6 HOH A 112 812 7 HOH HOH . 
P 6 HOH A 113 813 157 HOH HOH . 
P 6 HOH A 114 814 215 HOH HOH . 
P 6 HOH A 115 815 115 HOH HOH . 
P 6 HOH A 116 816 186 HOH HOH . 
P 6 HOH A 117 817 173 HOH HOH . 
P 6 HOH A 118 818 221 HOH HOH . 
P 6 HOH A 119 819 226 HOH HOH . 
P 6 HOH A 120 820 190 HOH HOH . 
P 6 HOH A 121 821 227 HOH HOH . 
P 6 HOH A 122 822 223 HOH HOH . 
P 6 HOH A 123 823 166 HOH HOH . 
P 6 HOH A 124 824 106 HOH HOH . 
P 6 HOH A 125 825 187 HOH HOH . 
Q 6 HOH B 1 701 73 HOH HOH . 
Q 6 HOH B 2 702 14 HOH HOH . 
Q 6 HOH B 3 703 6 HOH HOH . 
Q 6 HOH B 4 704 167 HOH HOH . 
Q 6 HOH B 5 705 129 HOH HOH . 
Q 6 HOH B 6 706 210 HOH HOH . 
Q 6 HOH B 7 707 141 HOH HOH . 
Q 6 HOH B 8 708 83 HOH HOH . 
Q 6 HOH B 9 709 125 HOH HOH . 
Q 6 HOH B 10 710 89 HOH HOH . 
Q 6 HOH B 11 711 159 HOH HOH . 
Q 6 HOH B 12 712 60 HOH HOH . 
Q 6 HOH B 13 713 131 HOH HOH . 
Q 6 HOH B 14 714 29 HOH HOH . 
Q 6 HOH B 15 715 156 HOH HOH . 
Q 6 HOH B 16 716 28 HOH HOH . 
Q 6 HOH B 17 717 67 HOH HOH . 
Q 6 HOH B 18 718 75 HOH HOH . 
Q 6 HOH B 19 719 158 HOH HOH . 
Q 6 HOH B 20 720 145 HOH HOH . 
Q 6 HOH B 21 721 197 HOH HOH . 
Q 6 HOH B 22 722 38 HOH HOH . 
Q 6 HOH B 23 723 23 HOH HOH . 
Q 6 HOH B 24 724 204 HOH HOH . 
Q 6 HOH B 25 725 174 HOH HOH . 
Q 6 HOH B 26 726 32 HOH HOH . 
Q 6 HOH B 27 727 105 HOH HOH . 
Q 6 HOH B 28 728 127 HOH HOH . 
Q 6 HOH B 29 729 10 HOH HOH . 
Q 6 HOH B 30 730 133 HOH HOH . 
Q 6 HOH B 31 731 64 HOH HOH . 
Q 6 HOH B 32 732 163 HOH HOH . 
Q 6 HOH B 33 733 90 HOH HOH . 
Q 6 HOH B 34 734 49 HOH HOH . 
Q 6 HOH B 35 735 181 HOH HOH . 
Q 6 HOH B 36 736 160 HOH HOH . 
Q 6 HOH B 37 737 108 HOH HOH . 
Q 6 HOH B 38 738 62 HOH HOH . 
Q 6 HOH B 39 739 220 HOH HOH . 
Q 6 HOH B 40 740 9 HOH HOH . 
Q 6 HOH B 41 741 33 HOH HOH . 
Q 6 HOH B 42 742 36 HOH HOH . 
Q 6 HOH B 43 743 112 HOH HOH . 
Q 6 HOH B 44 744 110 HOH HOH . 
Q 6 HOH B 45 745 193 HOH HOH . 
Q 6 HOH B 46 746 199 HOH HOH . 
Q 6 HOH B 47 747 143 HOH HOH . 
Q 6 HOH B 48 748 104 HOH HOH . 
Q 6 HOH B 49 749 198 HOH HOH . 
Q 6 HOH B 50 750 27 HOH HOH . 
Q 6 HOH B 51 751 51 HOH HOH . 
Q 6 HOH B 52 752 217 HOH HOH . 
Q 6 HOH B 53 753 59 HOH HOH . 
Q 6 HOH B 54 754 78 HOH HOH . 
Q 6 HOH B 55 755 66 HOH HOH . 
Q 6 HOH B 56 756 152 HOH HOH . 
Q 6 HOH B 57 757 119 HOH HOH . 
Q 6 HOH B 58 758 91 HOH HOH . 
Q 6 HOH B 59 759 219 HOH HOH . 
Q 6 HOH B 60 760 95 HOH HOH . 
Q 6 HOH B 61 761 162 HOH HOH . 
Q 6 HOH B 62 762 84 HOH HOH . 
Q 6 HOH B 63 763 50 HOH HOH . 
Q 6 HOH B 64 764 123 HOH HOH . 
Q 6 HOH B 65 765 185 HOH HOH . 
Q 6 HOH B 66 766 169 HOH HOH . 
Q 6 HOH B 67 767 205 HOH HOH . 
Q 6 HOH B 68 768 209 HOH HOH . 
Q 6 HOH B 69 769 81 HOH HOH . 
Q 6 HOH B 70 770 216 HOH HOH . 
Q 6 HOH B 71 771 170 HOH HOH . 
Q 6 HOH B 72 772 74 HOH HOH . 
Q 6 HOH B 73 773 144 HOH HOH . 
Q 6 HOH B 74 774 206 HOH HOH . 
Q 6 HOH B 75 775 171 HOH HOH . 
Q 6 HOH B 76 776 201 HOH HOH . 
Q 6 HOH B 77 777 128 HOH HOH . 
Q 6 HOH B 78 778 172 HOH HOH . 
Q 6 HOH B 79 779 96 HOH HOH . 
Q 6 HOH B 80 780 12 HOH HOH . 
Q 6 HOH B 81 781 180 HOH HOH . 
Q 6 HOH B 82 782 228 HOH HOH . 
Q 6 HOH B 83 783 189 HOH HOH . 
Q 6 HOH B 84 784 165 HOH HOH . 
Q 6 HOH B 85 785 139 HOH HOH . 
Q 6 HOH B 86 786 213 HOH HOH . 
Q 6 HOH B 87 787 109 HOH HOH . 
Q 6 HOH B 88 788 149 HOH HOH . 
Q 6 HOH B 89 789 179 HOH HOH . 
Q 6 HOH B 90 790 229 HOH HOH . 
Q 6 HOH B 91 791 207 HOH HOH . 
Q 6 HOH B 92 792 151 HOH HOH . 
Q 6 HOH B 93 793 114 HOH HOH . 
Q 6 HOH B 94 794 164 HOH HOH . 
Q 6 HOH B 95 795 233 HOH HOH . 
Q 6 HOH B 96 796 150 HOH HOH . 
Q 6 HOH B 97 797 212 HOH HOH . 
Q 6 HOH B 98 798 214 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 N6M . . . G 3 -14.412 -27.227 11.034 1 20.8 ? C6 N6M 605 A 1 
HETATM 2 C C5 N6M . . . G 3 -13.076 -27.731 10.899 1 20.06 ? C5 N6M 605 A 1 
HETATM 3 C C4 N6M . . . G 3 -12.819 -29.013 11.342 1 16.66 ? C4 N6M 605 A 1 
HETATM 4 C C2 N6M . . . G 3 -15.054 -29.265 11.975 1 14.74 ? C2 N6M 605 A 1 
HETATM 5 C C8 N6M . . . G 3 -10.952 -28.146 10.559 1 19.85 ? C8 N6M 605 A 1 
HETATM 6 C C11 N6M . . . G 3 -16.065 -25.322 10.806 1 17.46 ? C11 N6M 605 A 1 
HETATM 7 N N6 N6M . . . G 3 -14.727 -25.876 10.622 1 15 ? N6 N6M 605 A 1 
HETATM 8 N N1 N6M . . . G 3 -15.34 -28.015 11.571 1 19.9 ? N1 N6M 605 A 1 
HETATM 9 N N3 N6M . . . G 3 -13.824 -29.768 11.891 1 12.92 ? N3 N6M 605 A 1 
HETATM 10 N N9 N6M . . . G 3 -11.501 -29.255 11.098 1 16.78 ? N9 N6M 605 A 1 
HETATM 11 N N7 N6M . . . G 3 -11.905 -27.215 10.419 1 17.14 ? N7 N6M 605 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#