data_7YWC # _model_server_result.job_id RrTZFWt2VkjqBdvYyjMqqQ _model_server_result.datetime_utc '2024-11-26 00:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ywc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7YWC # _exptl.entry_id 7YWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.07 _cell.angle_gamma 90 _cell.entry_id 7YWC _cell.length_a 44.348 _cell.length_b 94.819 _cell.length_c 72.675 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7YWC _atom_sites.fract_transf_matrix[1][1] 0.022549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001606 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ISJ A 1 301 302 ISJ ISJ . D 3 GOL A 1 302 1 GOL GOL . E 3 GOL A 1 303 2 GOL GOL . F 3 GOL A 1 304 3 GOL GOL . G 3 GOL A 1 305 6 GOL GOL . H 2 ISJ B 1 301 303 ISJ ISJ . I 3 GOL B 1 302 4 GOL GOL . J 4 HOH A 1 401 15 HOH HOH . J 4 HOH A 2 402 131 HOH HOH . J 4 HOH A 3 403 113 HOH HOH . J 4 HOH A 4 404 74 HOH HOH . J 4 HOH A 5 405 277 HOH HOH . J 4 HOH A 6 406 77 HOH HOH . J 4 HOH A 7 407 164 HOH HOH . J 4 HOH A 8 408 115 HOH HOH . J 4 HOH A 9 409 171 HOH HOH . J 4 HOH A 10 410 297 HOH HOH . J 4 HOH A 11 411 329 HOH HOH . J 4 HOH A 12 412 109 HOH HOH . J 4 HOH A 13 413 53 HOH HOH . J 4 HOH A 14 414 18 HOH HOH . J 4 HOH A 15 415 122 HOH HOH . J 4 HOH A 16 416 33 HOH HOH . J 4 HOH A 17 417 156 HOH HOH . J 4 HOH A 18 418 126 HOH HOH . J 4 HOH A 19 419 27 HOH HOH . J 4 HOH A 20 420 210 HOH HOH . J 4 HOH A 21 421 238 HOH HOH . J 4 HOH A 22 422 26 HOH HOH . J 4 HOH A 23 423 87 HOH HOH . J 4 HOH A 24 424 7 HOH HOH . J 4 HOH A 25 425 64 HOH HOH . J 4 HOH A 26 426 25 HOH HOH . J 4 HOH A 27 427 96 HOH HOH . J 4 HOH A 28 428 75 HOH HOH . J 4 HOH A 29 429 219 HOH HOH . J 4 HOH A 30 430 66 HOH HOH . J 4 HOH A 31 431 188 HOH HOH . J 4 HOH A 32 432 52 HOH HOH . J 4 HOH A 33 433 363 HOH HOH . J 4 HOH A 34 434 10 HOH HOH . J 4 HOH A 35 435 172 HOH HOH . J 4 HOH A 36 436 57 HOH HOH . J 4 HOH A 37 437 291 HOH HOH . J 4 HOH A 38 438 6 HOH HOH . J 4 HOH A 39 439 92 HOH HOH . J 4 HOH A 40 440 78 HOH HOH . J 4 HOH A 41 441 41 HOH HOH . J 4 HOH A 42 442 72 HOH HOH . J 4 HOH A 43 443 38 HOH HOH . J 4 HOH A 44 444 322 HOH HOH . J 4 HOH A 45 445 71 HOH HOH . J 4 HOH A 46 446 167 HOH HOH . J 4 HOH A 47 447 90 HOH HOH . J 4 HOH A 48 448 196 HOH HOH . J 4 HOH A 49 449 95 HOH HOH . J 4 HOH A 50 450 79 HOH HOH . J 4 HOH A 51 451 209 HOH HOH . J 4 HOH A 52 452 76 HOH HOH . J 4 HOH A 53 453 370 HOH HOH . J 4 HOH A 54 454 153 HOH HOH . J 4 HOH A 55 455 371 HOH HOH . J 4 HOH A 56 456 330 HOH HOH . J 4 HOH A 57 457 201 HOH HOH . J 4 HOH A 58 458 85 HOH HOH . J 4 HOH A 59 459 244 HOH HOH . J 4 HOH A 60 460 237 HOH HOH . J 4 HOH A 61 461 81 HOH HOH . J 4 HOH A 62 462 101 HOH HOH . J 4 HOH A 63 463 183 HOH HOH . J 4 HOH A 64 464 37 HOH HOH . J 4 HOH A 65 465 11 HOH HOH . J 4 HOH A 66 466 332 HOH HOH . J 4 HOH A 67 467 314 HOH HOH . J 4 HOH A 68 468 260 HOH HOH . J 4 HOH A 69 469 8 HOH HOH . J 4 HOH A 70 470 12 HOH HOH . J 4 HOH A 71 471 16 HOH HOH . J 4 HOH A 72 472 19 HOH HOH . J 4 HOH A 73 473 69 HOH HOH . J 4 HOH A 74 474 140 HOH HOH . J 4 HOH A 75 475 169 HOH HOH . J 4 HOH A 76 476 34 HOH HOH . J 4 HOH A 77 477 91 HOH HOH . J 4 HOH A 78 478 226 HOH HOH . J 4 HOH A 79 479 207 HOH HOH . J 4 HOH A 80 480 73 HOH HOH . J 4 HOH A 81 481 255 HOH HOH . J 4 HOH A 82 482 214 HOH HOH . J 4 HOH A 83 483 178 HOH HOH . J 4 HOH A 84 484 259 HOH HOH . J 4 HOH A 85 485 276 HOH HOH . J 4 HOH A 86 486 22 HOH HOH . J 4 HOH A 87 487 144 HOH HOH . J 4 HOH A 88 488 254 HOH HOH . J 4 HOH A 89 489 251 HOH HOH . J 4 HOH A 90 490 128 HOH HOH . J 4 HOH A 91 491 359 HOH HOH . J 4 HOH A 92 492 151 HOH HOH . J 4 HOH A 93 493 166 HOH HOH . J 4 HOH A 94 494 173 HOH HOH . J 4 HOH A 95 495 80 HOH HOH . J 4 HOH A 96 496 309 HOH HOH . J 4 HOH A 97 497 218 HOH HOH . J 4 HOH A 98 498 112 HOH HOH . J 4 HOH A 99 499 204 HOH HOH . J 4 HOH A 100 500 246 HOH HOH . J 4 HOH A 101 501 157 HOH HOH . J 4 HOH A 102 502 130 HOH HOH . J 4 HOH A 103 503 125 HOH HOH . J 4 HOH A 104 504 108 HOH HOH . J 4 HOH A 105 505 50 HOH HOH . J 4 HOH A 106 506 132 HOH HOH . J 4 HOH A 107 507 195 HOH HOH . J 4 HOH A 108 508 365 HOH HOH . J 4 HOH A 109 509 335 HOH HOH . J 4 HOH A 110 510 325 HOH HOH . J 4 HOH A 111 511 327 HOH HOH . J 4 HOH A 112 512 368 HOH HOH . J 4 HOH A 113 513 119 HOH HOH . J 4 HOH A 114 514 32 HOH HOH . J 4 HOH A 115 515 118 HOH HOH . J 4 HOH A 116 516 247 HOH HOH . J 4 HOH A 117 517 315 HOH HOH . J 4 HOH A 118 518 256 HOH HOH . J 4 HOH A 119 519 321 HOH HOH . J 4 HOH A 120 520 349 HOH HOH . J 4 HOH A 121 521 358 HOH HOH . J 4 HOH A 122 522 278 HOH HOH . J 4 HOH A 123 523 334 HOH HOH . J 4 HOH A 124 524 329 HOH HOH . J 4 HOH A 125 525 338 HOH HOH . J 4 HOH A 126 526 200 HOH HOH . J 4 HOH A 127 527 373 HOH HOH . J 4 HOH A 128 528 364 HOH HOH . J 4 HOH A 129 529 258 HOH HOH . J 4 HOH A 130 530 285 HOH HOH . J 4 HOH A 131 531 194 HOH HOH . J 4 HOH A 132 532 360 HOH HOH . J 4 HOH A 133 533 228 HOH HOH . J 4 HOH A 134 534 367 HOH HOH . J 4 HOH A 135 535 222 HOH HOH . J 4 HOH A 136 536 208 HOH HOH . J 4 HOH A 137 537 372 HOH HOH . J 4 HOH A 138 538 103 HOH HOH . J 4 HOH A 139 539 361 HOH HOH . J 4 HOH A 140 540 316 HOH HOH . J 4 HOH A 141 541 184 HOH HOH . J 4 HOH A 142 542 283 HOH HOH . J 4 HOH A 143 543 241 HOH HOH . J 4 HOH A 144 544 339 HOH HOH . J 4 HOH A 145 545 170 HOH HOH . J 4 HOH A 146 546 296 HOH HOH . J 4 HOH A 147 547 369 HOH HOH . J 4 HOH A 148 548 279 HOH HOH . J 4 HOH A 149 549 152 HOH HOH . J 4 HOH A 150 550 284 HOH HOH . J 4 HOH A 151 551 274 HOH HOH . J 4 HOH A 152 552 294 HOH HOH . K 4 HOH B 1 401 223 HOH HOH . K 4 HOH B 2 402 4 HOH HOH . K 4 HOH B 3 403 136 HOH HOH . K 4 HOH B 4 404 123 HOH HOH . K 4 HOH B 5 405 40 HOH HOH . K 4 HOH B 6 406 114 HOH HOH . K 4 HOH B 7 407 86 HOH HOH . K 4 HOH B 8 408 139 HOH HOH . K 4 HOH B 9 409 221 HOH HOH . K 4 HOH B 10 410 234 HOH HOH . K 4 HOH B 11 411 36 HOH HOH . K 4 HOH B 12 412 23 HOH HOH . K 4 HOH B 13 413 39 HOH HOH . K 4 HOH B 14 414 264 HOH HOH . K 4 HOH B 15 415 116 HOH HOH . K 4 HOH B 16 416 62 HOH HOH . K 4 HOH B 17 417 382 HOH HOH . K 4 HOH B 18 418 143 HOH HOH . K 4 HOH B 19 419 13 HOH HOH . K 4 HOH B 20 420 55 HOH HOH . K 4 HOH B 21 421 105 HOH HOH . K 4 HOH B 22 422 148 HOH HOH . K 4 HOH B 23 423 330 HOH HOH . K 4 HOH B 24 424 47 HOH HOH . K 4 HOH B 25 425 98 HOH HOH . K 4 HOH B 26 426 124 HOH HOH . K 4 HOH B 27 427 46 HOH HOH . K 4 HOH B 28 428 106 HOH HOH . K 4 HOH B 29 429 20 HOH HOH . K 4 HOH B 30 430 149 HOH HOH . K 4 HOH B 31 431 43 HOH HOH . K 4 HOH B 32 432 67 HOH HOH . K 4 HOH B 33 433 70 HOH HOH . K 4 HOH B 34 434 107 HOH HOH . K 4 HOH B 35 435 190 HOH HOH . K 4 HOH B 36 436 24 HOH HOH . K 4 HOH B 37 437 29 HOH HOH . K 4 HOH B 38 438 342 HOH HOH . K 4 HOH B 39 439 203 HOH HOH . K 4 HOH B 40 440 225 HOH HOH . K 4 HOH B 41 441 356 HOH HOH . K 4 HOH B 42 442 45 HOH HOH . K 4 HOH B 43 443 61 HOH HOH . K 4 HOH B 44 444 205 HOH HOH . K 4 HOH B 45 445 273 HOH HOH . K 4 HOH B 46 446 102 HOH HOH . K 4 HOH B 47 447 343 HOH HOH . K 4 HOH B 48 448 376 HOH HOH . K 4 HOH B 49 449 133 HOH HOH . K 4 HOH B 50 450 137 HOH HOH . K 4 HOH B 51 451 245 HOH HOH . K 4 HOH B 52 452 213 HOH HOH . K 4 HOH B 53 453 142 HOH HOH . K 4 HOH B 54 454 197 HOH HOH . K 4 HOH B 55 455 250 HOH HOH . K 4 HOH B 56 456 381 HOH HOH . K 4 HOH B 57 457 138 HOH HOH . K 4 HOH B 58 458 121 HOH HOH . K 4 HOH B 59 459 59 HOH HOH . K 4 HOH B 60 460 180 HOH HOH . K 4 HOH B 61 461 63 HOH HOH . K 4 HOH B 62 462 17 HOH HOH . K 4 HOH B 63 463 185 HOH HOH . K 4 HOH B 64 464 301 HOH HOH . K 4 HOH B 65 465 117 HOH HOH . K 4 HOH B 66 466 5 HOH HOH . K 4 HOH B 67 467 21 HOH HOH . K 4 HOH B 68 468 82 HOH HOH . K 4 HOH B 69 469 175 HOH HOH . K 4 HOH B 70 470 28 HOH HOH . K 4 HOH B 71 471 1 HOH HOH . K 4 HOH B 72 472 181 HOH HOH . K 4 HOH B 73 473 68 HOH HOH . K 4 HOH B 74 474 89 HOH HOH . K 4 HOH B 75 475 9 HOH HOH . K 4 HOH B 76 476 248 HOH HOH . K 4 HOH B 77 477 300 HOH HOH . K 4 HOH B 78 478 345 HOH HOH . K 4 HOH B 79 479 366 HOH HOH . K 4 HOH B 80 480 42 HOH HOH . K 4 HOH B 81 481 129 HOH HOH . K 4 HOH B 82 482 275 HOH HOH . K 4 HOH B 83 483 134 HOH HOH . K 4 HOH B 84 484 271 HOH HOH . K 4 HOH B 85 485 49 HOH HOH . K 4 HOH B 86 486 282 HOH HOH . K 4 HOH B 87 487 383 HOH HOH . K 4 HOH B 88 488 355 HOH HOH . K 4 HOH B 89 489 302 HOH HOH . K 4 HOH B 90 490 344 HOH HOH . K 4 HOH B 91 491 99 HOH HOH . K 4 HOH B 92 492 84 HOH HOH . K 4 HOH B 93 493 239 HOH HOH . K 4 HOH B 94 494 380 HOH HOH . K 4 HOH B 95 495 154 HOH HOH . K 4 HOH B 96 496 193 HOH HOH . K 4 HOH B 97 497 58 HOH HOH . K 4 HOH B 98 498 83 HOH HOH . K 4 HOH B 99 499 159 HOH HOH . K 4 HOH B 100 500 163 HOH HOH . K 4 HOH B 101 501 51 HOH HOH . K 4 HOH B 102 502 375 HOH HOH . K 4 HOH B 103 503 160 HOH HOH . K 4 HOH B 104 504 88 HOH HOH . K 4 HOH B 105 505 182 HOH HOH . K 4 HOH B 106 506 292 HOH HOH . K 4 HOH B 107 507 158 HOH HOH . K 4 HOH B 108 508 346 HOH HOH . K 4 HOH B 109 509 379 HOH HOH . K 4 HOH B 110 510 229 HOH HOH . K 4 HOH B 111 511 313 HOH HOH . K 4 HOH B 112 512 127 HOH HOH . K 4 HOH B 113 513 341 HOH HOH . K 4 HOH B 114 514 354 HOH HOH . K 4 HOH B 115 515 304 HOH HOH . K 4 HOH B 116 516 337 HOH HOH . K 4 HOH B 117 517 295 HOH HOH . K 4 HOH B 118 518 206 HOH HOH . K 4 HOH B 119 519 280 HOH HOH . K 4 HOH B 120 520 236 HOH HOH . K 4 HOH B 121 521 93 HOH HOH . K 4 HOH B 122 522 348 HOH HOH . K 4 HOH B 123 523 328 HOH HOH . K 4 HOH B 124 524 350 HOH HOH . K 4 HOH B 125 525 242 HOH HOH . K 4 HOH B 126 526 289 HOH HOH . K 4 HOH B 127 527 374 HOH HOH . K 4 HOH B 128 528 362 HOH HOH . K 4 HOH B 129 529 233 HOH HOH . K 4 HOH B 130 530 308 HOH HOH . K 4 HOH B 131 531 347 HOH HOH . K 4 HOH B 132 532 135 HOH HOH . K 4 HOH B 133 533 141 HOH HOH . K 4 HOH B 134 534 377 HOH HOH . K 4 HOH B 135 535 97 HOH HOH . K 4 HOH B 136 536 378 HOH HOH . K 4 HOH B 137 537 288 HOH HOH . K 4 HOH B 138 538 232 HOH HOH . K 4 HOH B 139 539 318 HOH HOH . K 4 HOH B 140 540 303 HOH HOH . K 4 HOH B 141 541 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 9.051 -8.649 21.34 1 61.39 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 3 9.681 -9.445 20.358 1 66.43 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 3 9.499 -7.201 21.17 1 53.6 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 3 8.438 -6.413 20.681 1 54.35 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 3 9.967 -6.631 22.498 1 48.35 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 3 10.247 -5.263 22.303 1 47.18 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #