data_7YWU
#
_model_server_result.job_id            GJBCLNh2sljDcOM45b_qww 
_model_server_result.datetime_utc      '2025-06-21 08:40:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ywu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":601}' 
#
_entry.id    7YWU 
#
_exptl.entry_id    7YWU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.25 
_cell.angle_gamma         90 
_cell.entry_id            7YWU 
_cell.length_a            149.641 
_cell.length_b            79.429 
_cell.length_c            189.18 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YWU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,I,J,K,L,M,S,T,U,BA,EA 1 1 
B,C,N,O,P,Q,R,CA,DA 2 1 
E,G,V,W,Y,Z,FA,GA 3 1 
F,H,X,AA,HA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 P N N 
? 2 S N N 
? 2 V N N 
? 2 Y N N 
? 2 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 390 A HIS 390 1_555 I C8M FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 B NE2 HIS 390 B HIS 390 1_555 O C37 I7I . B I7I 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? 
covale ? covale3 C NE2 HIS 390 C HIS 390 1_555 P C8M FAD . C FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 D NE2 HIS 390 D HIS 390 1_555 S C8M FAD . D FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale5 E NE2 HIS 390 E HIS 390 1_555 V C8M FAD . E FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 F NE2 HIS 390 F HIS 390 1_555 X C37 I7I . F I7I 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale7 G NE2 HIS 390 G HIS 390 1_555 Y C8M FAD . G FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 H NE2 HIS 390 H HIS 390 1_555 AA C8M FAD . H FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 107 n n 
PA O2A FAD sing 108 n n 
PA O5B FAD sing 109 n n 
PA O3P FAD sing 110 n n 
O2A HOA2 FAD sing 111 n n 
O5B C5B FAD sing 112 n n 
C5B C4B FAD sing 113 n n 
C5B H51A FAD sing 114 n n 
C5B H52A FAD sing 115 n n 
C4B O4B FAD sing 116 n n 
C4B C3B FAD sing 117 n n 
C4B H4B FAD sing 118 n n 
O4B C1B FAD sing 119 n n 
C3B O3B FAD sing 120 n n 
C3B C2B FAD sing 121 n n 
C3B H3B FAD sing 122 n n 
O3B HO3A FAD sing 123 n n 
C2B O2B FAD sing 124 n n 
C2B C1B FAD sing 125 n n 
C2B H2B FAD sing 126 n n 
O2B HO2A FAD sing 127 n n 
C1B N9A FAD sing 128 n n 
C1B H1B FAD sing 129 n n 
N9A C8A FAD sing 130 n y 
N9A C4A FAD sing 131 n y 
C8A N7A FAD doub 132 n y 
C8A H8A FAD sing 133 n n 
N7A C5A FAD sing 134 n y 
C5A C6A FAD sing 135 n y 
C5A C4A FAD doub 136 n y 
C6A N6A FAD sing 137 n n 
C6A N1A FAD doub 138 n y 
N6A H61A FAD sing 139 n n 
N6A H62A FAD sing 140 n n 
N1A C2A FAD sing 141 n y 
C2A N3A FAD doub 142 n y 
C2A H2A FAD sing 143 n n 
N3A C4A FAD sing 144 n y 
N1 C2 FAD sing 145 n n 
N1 C10 FAD doub 146 n n 
C2 O2 FAD doub 147 n n 
C2 N3 FAD sing 148 n n 
N3 C4 FAD sing 149 n n 
N3 HN3 FAD sing 150 n n 
C4 O4 FAD doub 151 n n 
C4 C4X FAD sing 152 n n 
C4X N5 FAD doub 153 n n 
C4X C10 FAD sing 154 n n 
N5 C5X FAD sing 155 n n 
C5X C6 FAD doub 156 n y 
C5X C9A FAD sing 157 n y 
C6 C7 FAD sing 158 n y 
C6 H6 FAD sing 159 n n 
C7 C7M FAD sing 160 n n 
C7 C8 FAD doub 161 n y 
C7M HM71 FAD sing 162 n n 
C7M HM72 FAD sing 163 n n 
C7M HM73 FAD sing 164 n n 
C8 C8M FAD sing 165 n n 
C8 C9 FAD sing 166 n y 
C8M HM81 FAD sing 167 n n 
C8M HM82 FAD sing 168 n n 
C8M HM83 FAD sing 169 n n 
C9 C9A FAD doub 170 n y 
C9 H9 FAD sing 171 n n 
C9A N10 FAD sing 172 n n 
N10 C10 FAD sing 173 n n 
N10 C1' FAD sing 174 n n 
C1' C2' FAD sing 175 n n 
C1' "H1'1" FAD sing 176 n n 
C1' "H1'2" FAD sing 177 n n 
C2' O2' FAD sing 178 n n 
C2' C3' FAD sing 179 n n 
C2' H2' FAD sing 180 n n 
O2' HO2' FAD sing 181 n n 
C3' O3' FAD sing 182 n n 
C3' C4' FAD sing 183 n n 
C3' H3' FAD sing 184 n n 
O3' HO3' FAD sing 185 n n 
C4' O4' FAD sing 186 n n 
C4' C5' FAD sing 187 n n 
C4' H4' FAD sing 188 n n 
O4' HO4' FAD sing 189 n n 
C5' O5' FAD sing 190 n n 
C5' "H5'1" FAD sing 191 n n 
C5' "H5'2" FAD sing 192 n n 
O5' P FAD sing 193 n n 
P O1P FAD doub 194 n n 
P O2P FAD sing 195 n n 
P O3P FAD sing 196 n n 
O2P HOP2 FAD sing 197 n n 
#
_atom_sites.entry_id                     7YWU 
_atom_sites.fract_transf_matrix[1][1]    0.006683 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000732 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FAD A 1 601 600 FAD FAD . 
J 3 HEZ A 1 602 801 HEZ HEZ . 
K 3 HEZ A 1 603 1001 HEZ HEZ . 
L 4 GOL A 1 604 1101 GOL GOL . 
M 5 EOL A 1 605 1201 EOL DRU . 
N 3 HEZ B 1 801 801 HEZ HEZ . 
O 6 I7I B 1 802 901 I7I DRG . 
P 2 FAD C 1 601 600 FAD FAD . 
Q 4 GOL C 1 602 801 GOL GOL . 
R 5 EOL C 1 603 901 EOL DRU . 
S 2 FAD D 1 601 600 FAD FAD . 
T 3 HEZ D 1 602 801 HEZ HEZ . 
U 5 EOL D 1 603 901 EOL DRU . 
V 2 FAD E 1 601 600 FAD FAD . 
W 5 EOL E 1 602 701 EOL DRU . 
X 6 I7I F 1 901 901 I7I DRG . 
Y 2 FAD G 1 601 600 FAD FAD . 
Z 5 EOL G 1 602 701 EOL DRU . 
AA 2 FAD H 1 600 600 FAD FAD . 
BA 7 HOH A 1 701 33 HOH HOH . 
BA 7 HOH A 2 702 27 HOH HOH . 
BA 7 HOH A 3 703 8 HOH HOH . 
BA 7 HOH A 4 704 23 HOH HOH . 
BA 7 HOH A 5 705 5 HOH HOH . 
BA 7 HOH A 6 706 35 HOH HOH . 
BA 7 HOH A 7 707 4 HOH HOH . 
BA 7 HOH A 8 708 17 HOH HOH . 
CA 7 HOH B 1 901 32 HOH HOH . 
CA 7 HOH B 2 902 25 HOH HOH . 
CA 7 HOH B 3 903 3 HOH HOH . 
CA 7 HOH B 4 904 24 HOH HOH . 
CA 7 HOH B 5 905 14 HOH HOH . 
DA 7 HOH C 1 701 26 HOH HOH . 
DA 7 HOH C 2 702 7 HOH HOH . 
DA 7 HOH C 3 703 20 HOH HOH . 
DA 7 HOH C 4 704 21 HOH HOH . 
DA 7 HOH C 5 705 37 HOH HOH . 
EA 7 HOH D 1 701 10 HOH HOH . 
EA 7 HOH D 2 702 16 HOH HOH . 
EA 7 HOH D 3 703 28 HOH HOH . 
EA 7 HOH D 4 704 1 HOH HOH . 
EA 7 HOH D 5 705 6 HOH HOH . 
EA 7 HOH D 6 706 18 HOH HOH . 
EA 7 HOH D 7 707 30 HOH HOH . 
EA 7 HOH D 8 708 15 HOH HOH . 
FA 7 HOH E 1 701 36 HOH HOH . 
FA 7 HOH E 2 702 34 HOH HOH . 
GA 7 HOH G 1 701 12 HOH HOH . 
GA 7 HOH G 2 702 11 HOH HOH . 
GA 7 HOH G 3 703 22 HOH HOH . 
GA 7 HOH G 4 704 13 HOH HOH . 
HA 7 HOH H 1 701 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . Y 2 110.382 -19.966 23.464 1 60.71 ? PA FAD 601 G 1 
HETATM 2 O O1A FAD . . . Y 2 111.118 -18.715 23.101 1 60.78 ? O1A FAD 601 G 1 
HETATM 3 O O2A FAD . . . Y 2 111.01 -21.276 23.147 1 62.08 ? O2A FAD 601 G 1 
HETATM 4 O O5B FAD . . . Y 2 109.995 -19.961 25.015 1 62.69 ? O5B FAD 601 G 1 
HETATM 5 C C5B FAD . . . Y 2 109.415 -18.779 25.631 1 61.71 ? C5B FAD 601 G 1 
HETATM 6 C C4B FAD . . . Y 2 109.936 -18.698 27.041 1 58.29 ? C4B FAD 601 G 1 
HETATM 7 O O4B FAD . . . Y 2 109.338 -19.762 27.827 1 54.74 ? O4B FAD 601 G 1 
HETATM 8 C C3B FAD . . . Y 2 111.447 -18.92 27.19 1 57.11 ? C3B FAD 601 G 1 
HETATM 9 O O3B FAD . . . Y 2 112.184 -17.731 26.934 1 55.99 ? O3B FAD 601 G 1 
HETATM 10 C C2B FAD . . . Y 2 111.514 -19.435 28.63 1 54.12 ? C2B FAD 601 G 1 
HETATM 11 O O2B FAD . . . Y 2 111.362 -18.406 29.582 1 53.42 ? O2B FAD 601 G 1 
HETATM 12 C C1B FAD . . . Y 2 110.319 -20.384 28.632 1 53.76 ? C1B FAD 601 G 1 
HETATM 13 N N9A FAD . . . Y 2 110.61 -21.713 28.075 1 53.12 ? N9A FAD 601 G 1 
HETATM 14 C C8A FAD . . . Y 2 110.672 -22.072 26.74 1 50.94 ? C8A FAD 601 G 1 
HETATM 15 N N7A FAD . . . Y 2 110.966 -23.339 26.569 1 50.06 ? N7A FAD 601 G 1 
HETATM 16 C C5A FAD . . . Y 2 111.107 -23.844 27.854 1 52.36 ? C5A FAD 601 G 1 
HETATM 17 C C6A FAD . . . Y 2 111.41 -25.133 28.335 1 54.86 ? C6A FAD 601 G 1 
HETATM 18 N N6A FAD . . . Y 2 111.629 -26.179 27.541 1 53.54 ? N6A FAD 601 G 1 
HETATM 19 N N1A FAD . . . Y 2 111.466 -25.296 29.682 1 54.33 ? N1A FAD 601 G 1 
HETATM 20 C C2A FAD . . . Y 2 111.234 -24.231 30.464 1 51.25 ? C2A FAD 601 G 1 
HETATM 21 N N3A FAD . . . Y 2 110.937 -22.978 30.123 1 50.29 ? N3A FAD 601 G 1 
HETATM 22 C C4A FAD . . . Y 2 110.888 -22.85 28.788 1 51.83 ? C4A FAD 601 G 1 
HETATM 23 N N1 FAD . . . Y 2 102.649 -14.501 20.693 1 46.34 ? N1 FAD 601 G 1 
HETATM 24 C C2 FAD . . . Y 2 101.481 -15.087 20.934 1 48.27 ? C2 FAD 601 G 1 
HETATM 25 O O2 FAD . . . Y 2 101.357 -15.828 21.905 1 50.63 ? O2 FAD 601 G 1 
HETATM 26 N N3 FAD . . . Y 2 100.389 -14.905 20.131 1 47.87 ? N3 FAD 601 G 1 
HETATM 27 C C4 FAD . . . Y 2 100.432 -14.103 19.015 1 52.39 ? C4 FAD 601 G 1 
HETATM 28 O O4 FAD . . . Y 2 99.425 -13.969 18.326 1 52.98 ? O4 FAD 601 G 1 
HETATM 29 C C4X FAD . . . Y 2 101.663 -13.439 18.737 1 53.74 ? C4X FAD 601 G 1 
HETATM 30 N N5 FAD . . . Y 2 101.758 -12.653 17.684 1 56.07 ? N5 FAD 601 G 1 
HETATM 31 C C5X FAD . . . Y 2 102.962 -12.023 17.478 1 59.18 ? C5X FAD 601 G 1 
HETATM 32 C C6 FAD . . . Y 2 103.096 -11.155 16.376 1 61.52 ? C6 FAD 601 G 1 
HETATM 33 C C7 FAD . . . Y 2 104.273 -10.483 16.117 1 60.04 ? C7 FAD 601 G 1 
HETATM 34 C C7M FAD . . . Y 2 104.36 -9.561 14.926 1 59.53 ? C7M FAD 601 G 1 
HETATM 35 C C8 FAD . . . Y 2 105.393 -10.671 16.987 1 59.66 ? C8 FAD 601 G 1 
HETATM 36 C C8M FAD . . . Y 2 106.701 -9.935 16.773 1 63.58 ? C8M FAD 601 G 1 
HETATM 37 C C9 FAD . . . Y 2 105.274 -11.536 18.054 1 56.26 ? C9 FAD 601 G 1 
HETATM 38 C C9A FAD . . . Y 2 104.072 -12.211 18.328 1 55.88 ? C9A FAD 601 G 1 
HETATM 39 N N10 FAD . . . Y 2 103.933 -13.075 19.411 1 54.44 ? N10 FAD 601 G 1 
HETATM 40 C C10 FAD . . . Y 2 102.741 -13.705 19.656 1 49.83 ? C10 FAD 601 G 1 
HETATM 41 C C1' FAD . . . Y 2 105.064 -13.296 20.331 1 58.67 ? C1' FAD 601 G 1 
HETATM 42 C C2' FAD . . . Y 2 105.986 -14.371 19.831 1 59.45 ? C2' FAD 601 G 1 
HETATM 43 O O2' FAD . . . Y 2 106.026 -14.298 18.409 1 63.88 ? O2' FAD 601 G 1 
HETATM 44 C C3' FAD . . . Y 2 105.523 -15.766 20.26 1 61.73 ? C3' FAD 601 G 1 
HETATM 45 O O3' FAD . . . Y 2 104.981 -15.713 21.586 1 59.4 ? O3' FAD 601 G 1 
HETATM 46 C C4' FAD . . . Y 2 106.641 -16.811 20.164 1 61.68 ? C4' FAD 601 G 1 
HETATM 47 O O4' FAD . . . Y 2 106.2 -17.91 19.364 1 59.41 ? O4' FAD 601 G 1 
HETATM 48 C C5' FAD . . . Y 2 107.084 -17.346 21.506 1 62.99 ? C5' FAD 601 G 1 
HETATM 49 O O5' FAD . . . Y 2 108.438 -17.878 21.411 1 62.03 ? O5' FAD 601 G 1 
HETATM 50 P P FAD . . . Y 2 108.667 -19.46 21.293 1 60.24 ? P FAD 601 G 1 
HETATM 51 O O1P FAD . . . Y 2 109.949 -19.692 20.567 1 63.46 ? O1P FAD 601 G 1 
HETATM 52 O O2P FAD . . . Y 2 107.396 -20.077 20.812 1 62.52 ? O2P FAD 601 G 1 
HETATM 53 O O3P FAD . . . Y 2 108.932 -19.886 22.802 1 58.86 ? O3P FAD 601 G 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#