data_7YX3
#
_model_server_result.job_id            '_Wz3a1zfMKv3L0Vn9T4_sw' 
_model_server_result.datetime_utc      '2024-12-22 05:53:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    7YX3 
#
_exptl.entry_id    7YX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YX3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    18-meric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? 0.650377 0.759612 0 -0.759612 0.650377 0 0 0 1 -89.75992 242.11832 -20.47 
3 'point symmetry operation' ? ? 0.650377 -0.759612 0 0.759612 0.650377 0 0 0 1 242.29371 -89.28538 20.47 
4 'point symmetry operation' ? ? 0.332655 -0.943049 0 0.943049 0.332655 0 0 0 1 351.69492 -59.85652 -20.47 
5 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 516.49558 138.93701 0 
6 'point symmetry operation' ? ? -0.983032 -0.183437 0 0.183437 -0.983032 0 0 0 1 472.67213 393.41221 20.47 
7 'point symmetry operation' ? ? -0.983032 0.183437 0 -0.183437 -0.983032 0 0 0 1 392.48538 473.44201 -20.47 
8 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 137.92481 516.7668 0 
9 'point symmetry operation' ? ? 0.332655 0.943049 0 -0.943049 0.332655 0 0 0 1 -60.54545 351.57697 20.47 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     7YX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 901 901 FAD FAD . 
D 2 FAD B 1 901 901 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 267.223 311.307 234.597 1 15.55 ? PA FAD 901 B 1 
HETATM 2 O O1A FAD . . . D 2 266.729 311.837 233.306 1 15.55 ? O1A FAD 901 B 1 
HETATM 3 O O2A FAD . . . D 2 266.143 310.755 235.53 1 15.55 ? O2A FAD 901 B 1 
HETATM 4 O O5B FAD . . . D 2 268.319 310.223 234.326 1 15.55 ? O5B FAD 901 B 1 
HETATM 5 C C5B FAD . . . D 2 268.446 309.596 233.033 1 15.55 ? C5B FAD 901 B 1 
HETATM 6 C C4B FAD . . . D 2 268.052 308.145 233.155 1 15.55 ? C4B FAD 901 B 1 
HETATM 7 O O4B FAD . . . D 2 266.985 307.85 232.224 1 15.55 ? O4B FAD 901 B 1 
HETATM 8 C C3B FAD . . . D 2 269.169 307.14 232.872 1 15.55 ? C3B FAD 901 B 1 
HETATM 9 O O3B FAD . . . D 2 269.175 306.097 233.84 1 15.55 ? O3B FAD 901 B 1 
HETATM 10 C C2B FAD . . . D 2 268.83 306.625 231.47 1 15.55 ? C2B FAD 901 B 1 
HETATM 11 O O2B FAD . . . D 2 269.272 305.288 231.27 1 15.55 ? O2B FAD 901 B 1 
HETATM 12 C C1B FAD . . . D 2 267.306 306.686 231.496 1 15.55 ? C1B FAD 901 B 1 
HETATM 13 N N9A FAD . . . D 2 266.686 306.774 230.177 1 15.55 ? N9A FAD 901 B 1 
HETATM 14 C C8A FAD . . . D 2 266.574 307.885 229.384 1 15.55 ? C8A FAD 901 B 1 
HETATM 15 N N7A FAD . . . D 2 265.965 307.669 228.243 1 15.55 ? N7A FAD 901 B 1 
HETATM 16 C C5A FAD . . . D 2 265.656 306.317 228.287 1 15.55 ? C5A FAD 901 B 1 
HETATM 17 C C6A FAD . . . D 2 265.005 305.461 227.378 1 15.55 ? C6A FAD 901 B 1 
HETATM 18 N N6A FAD . . . D 2 264.527 305.857 226.195 1 15.55 ? N6A FAD 901 B 1 
HETATM 19 N N1A FAD . . . D 2 264.859 304.165 227.731 1 15.55 ? N1A FAD 901 B 1 
HETATM 20 C C2A FAD . . . D 2 265.334 303.763 228.912 1 15.55 ? C2A FAD 901 B 1 
HETATM 21 N N3A FAD . . . D 2 265.964 304.476 229.849 1 15.55 ? N3A FAD 901 B 1 
HETATM 22 C C4A FAD . . . D 2 266.095 305.753 229.473 1 15.55 ? C4A FAD 901 B 1 
HETATM 23 N N1 FAD . . . D 2 273.101 319.389 239.207 1 15.55 ? N1 FAD 901 B 1 
HETATM 24 C C2 FAD . . . D 2 273.537 320.024 240.334 1 15.55 ? C2 FAD 901 B 1 
HETATM 25 O O2 FAD . . . D 2 272.777 320.267 241.276 1 15.55 ? O2 FAD 901 B 1 
HETATM 26 N N3 FAD . . . D 2 274.86 320.411 240.434 1 15.55 ? N3 FAD 901 B 1 
HETATM 27 C C4 FAD . . . D 2 275.836 320.222 239.482 1 15.55 ? C4 FAD 901 B 1 
HETATM 28 O O4 FAD . . . D 2 276.984 320.614 239.687 1 15.55 ? O4 FAD 901 B 1 
HETATM 29 C C4X FAD . . . D 2 275.366 319.547 238.29 1 15.55 ? C4X FAD 901 B 1 
HETATM 30 N N5 FAD . . . D 2 276.222 319.324 237.334 1 15.55 ? N5 FAD 901 B 1 
HETATM 31 C C5X FAD . . . D 2 275.77 318.682 236.194 1 15.55 ? C5X FAD 901 B 1 
HETATM 32 C C6 FAD . . . D 2 276.674 318.432 235.163 1 15.55 ? C6 FAD 901 B 1 
HETATM 33 C C7 FAD . . . D 2 276.27 317.786 233.999 1 15.55 ? C7 FAD 901 B 1 
HETATM 34 C C7M FAD . . . D 2 277.273 317.536 232.904 1 15.55 ? C7M FAD 901 B 1 
HETATM 35 C C8 FAD . . . D 2 274.934 317.377 233.861 1 15.55 ? C8 FAD 901 B 1 
HETATM 36 C C8M FAD . . . D 2 274.463 316.676 232.615 1 15.55 ? C8M FAD 901 B 1 
HETATM 37 C C9 FAD . . . D 2 274.03 317.622 234.89 1 15.55 ? C9 FAD 901 B 1 
HETATM 38 C C9A FAD . . . D 2 274.438 318.267 236.051 1 15.55 ? C9A FAD 901 B 1 
HETATM 39 N N10 FAD . . . D 2 273.549 318.524 237.112 1 15.55 ? N10 FAD 901 B 1 
HETATM 40 C C10 FAD . . . D 2 273.977 319.168 238.245 1 15.55 ? C10 FAD 901 B 1 
HETATM 41 C C1' FAD . . . D 2 272.137 318.131 237.02 1 15.55 ? C1' FAD 901 B 1 
HETATM 42 C C2' FAD . . . D 2 271.838 316.792 237.681 1 15.55 ? C2' FAD 901 B 1 
HETATM 43 O O2' FAD . . . D 2 272.341 315.72 236.883 1 15.55 ? O2' FAD 901 B 1 
HETATM 44 C C3' FAD . . . D 2 270.325 316.64 237.858 1 15.55 ? C3' FAD 901 B 1 
HETATM 45 O O3' FAD . . . D 2 270.06 315.364 238.43 1 15.55 ? O3' FAD 901 B 1 
HETATM 46 C C4' FAD . . . D 2 269.494 316.781 236.581 1 15.55 ? C4' FAD 901 B 1 
HETATM 47 O O4' FAD . . . D 2 269.208 318.159 236.341 1 15.55 ? O4' FAD 901 B 1 
HETATM 48 C C5' FAD . . . D 2 268.193 316.009 236.65 1 15.55 ? C5' FAD 901 B 1 
HETATM 49 O O5' FAD . . . D 2 268.468 314.601 236.498 1 15.55 ? O5' FAD 901 B 1 
HETATM 50 P P FAD . . . D 2 267.309 313.568 236.237 1 15.55 ? P FAD 901 B 1 
HETATM 51 O O1P FAD . . . D 2 266.865 312.945 237.564 1 15.55 ? O1P FAD 901 B 1 
HETATM 52 O O2P FAD . . . D 2 266.222 314.196 235.451 1 15.55 ? O2P FAD 901 B 1 
HETATM 53 O O3P FAD . . . D 2 268.013 312.437 235.38 1 15.55 ? O3P FAD 901 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           1402 
_model_server_stats.encode_time_ms          24 
_model_server_stats.element_count           53 
#