data_7YX3 # _model_server_result.job_id ZCLl1_c40MtGYC46ZiaFAA _model_server_result.datetime_utc '2024-12-13 23:46:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 7YX3 # _exptl.entry_id 7YX3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YX3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 18-meric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.650377 0.759612 0 -0.759612 0.650377 0 0 0 1 -89.75992 242.11832 -20.47 3 'point symmetry operation' ? ? 0.650377 -0.759612 0 0.759612 0.650377 0 0 0 1 242.29371 -89.28538 20.47 4 'point symmetry operation' ? ? 0.332655 -0.943049 0 0.943049 0.332655 0 0 0 1 351.69492 -59.85652 -20.47 5 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 516.49558 138.93701 0 6 'point symmetry operation' ? ? -0.983032 -0.183437 0 0.183437 -0.983032 0 0 0 1 472.67213 393.41221 20.47 7 'point symmetry operation' ? ? -0.983032 0.183437 0 -0.183437 -0.983032 0 0 0 1 392.48538 473.44201 -20.47 8 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 137.92481 516.7668 0 9 'point symmetry operation' ? ? 0.332655 0.943049 0 -0.943049 0.332655 0 0 0 1 -60.54545 351.57697 20.47 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 7YX3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 901 FAD FAD . D 2 FAD B 1 901 901 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 2 267.223 311.307 234.597 1 15.55 ? PA FAD 901 B 1 HETATM 2 O O1A FAD . . . D 2 266.729 311.837 233.306 1 15.55 ? O1A FAD 901 B 1 HETATM 3 O O2A FAD . . . D 2 266.143 310.755 235.53 1 15.55 ? O2A FAD 901 B 1 HETATM 4 O O5B FAD . . . D 2 268.319 310.223 234.326 1 15.55 ? O5B FAD 901 B 1 HETATM 5 C C5B FAD . . . D 2 268.446 309.596 233.033 1 15.55 ? C5B FAD 901 B 1 HETATM 6 C C4B FAD . . . D 2 268.052 308.145 233.155 1 15.55 ? C4B FAD 901 B 1 HETATM 7 O O4B FAD . . . D 2 266.985 307.85 232.224 1 15.55 ? O4B FAD 901 B 1 HETATM 8 C C3B FAD . . . D 2 269.169 307.14 232.872 1 15.55 ? C3B FAD 901 B 1 HETATM 9 O O3B FAD . . . D 2 269.175 306.097 233.84 1 15.55 ? O3B FAD 901 B 1 HETATM 10 C C2B FAD . . . D 2 268.83 306.625 231.47 1 15.55 ? C2B FAD 901 B 1 HETATM 11 O O2B FAD . . . D 2 269.272 305.288 231.27 1 15.55 ? O2B FAD 901 B 1 HETATM 12 C C1B FAD . . . D 2 267.306 306.686 231.496 1 15.55 ? C1B FAD 901 B 1 HETATM 13 N N9A FAD . . . D 2 266.686 306.774 230.177 1 15.55 ? N9A FAD 901 B 1 HETATM 14 C C8A FAD . . . D 2 266.574 307.885 229.384 1 15.55 ? C8A FAD 901 B 1 HETATM 15 N N7A FAD . . . D 2 265.965 307.669 228.243 1 15.55 ? N7A FAD 901 B 1 HETATM 16 C C5A FAD . . . D 2 265.656 306.317 228.287 1 15.55 ? C5A FAD 901 B 1 HETATM 17 C C6A FAD . . . D 2 265.005 305.461 227.378 1 15.55 ? C6A FAD 901 B 1 HETATM 18 N N6A FAD . . . D 2 264.527 305.857 226.195 1 15.55 ? N6A FAD 901 B 1 HETATM 19 N N1A FAD . . . D 2 264.859 304.165 227.731 1 15.55 ? N1A FAD 901 B 1 HETATM 20 C C2A FAD . . . D 2 265.334 303.763 228.912 1 15.55 ? C2A FAD 901 B 1 HETATM 21 N N3A FAD . . . D 2 265.964 304.476 229.849 1 15.55 ? N3A FAD 901 B 1 HETATM 22 C C4A FAD . . . D 2 266.095 305.753 229.473 1 15.55 ? C4A FAD 901 B 1 HETATM 23 N N1 FAD . . . D 2 273.101 319.389 239.207 1 15.55 ? N1 FAD 901 B 1 HETATM 24 C C2 FAD . . . D 2 273.537 320.024 240.334 1 15.55 ? C2 FAD 901 B 1 HETATM 25 O O2 FAD . . . D 2 272.777 320.267 241.276 1 15.55 ? O2 FAD 901 B 1 HETATM 26 N N3 FAD . . . D 2 274.86 320.411 240.434 1 15.55 ? N3 FAD 901 B 1 HETATM 27 C C4 FAD . . . D 2 275.836 320.222 239.482 1 15.55 ? C4 FAD 901 B 1 HETATM 28 O O4 FAD . . . D 2 276.984 320.614 239.687 1 15.55 ? O4 FAD 901 B 1 HETATM 29 C C4X FAD . . . D 2 275.366 319.547 238.29 1 15.55 ? C4X FAD 901 B 1 HETATM 30 N N5 FAD . . . D 2 276.222 319.324 237.334 1 15.55 ? N5 FAD 901 B 1 HETATM 31 C C5X FAD . . . D 2 275.77 318.682 236.194 1 15.55 ? C5X FAD 901 B 1 HETATM 32 C C6 FAD . . . D 2 276.674 318.432 235.163 1 15.55 ? C6 FAD 901 B 1 HETATM 33 C C7 FAD . . . D 2 276.27 317.786 233.999 1 15.55 ? C7 FAD 901 B 1 HETATM 34 C C7M FAD . . . D 2 277.273 317.536 232.904 1 15.55 ? C7M FAD 901 B 1 HETATM 35 C C8 FAD . . . D 2 274.934 317.377 233.861 1 15.55 ? C8 FAD 901 B 1 HETATM 36 C C8M FAD . . . D 2 274.463 316.676 232.615 1 15.55 ? C8M FAD 901 B 1 HETATM 37 C C9 FAD . . . D 2 274.03 317.622 234.89 1 15.55 ? C9 FAD 901 B 1 HETATM 38 C C9A FAD . . . D 2 274.438 318.267 236.051 1 15.55 ? C9A FAD 901 B 1 HETATM 39 N N10 FAD . . . D 2 273.549 318.524 237.112 1 15.55 ? N10 FAD 901 B 1 HETATM 40 C C10 FAD . . . D 2 273.977 319.168 238.245 1 15.55 ? C10 FAD 901 B 1 HETATM 41 C C1' FAD . . . D 2 272.137 318.131 237.02 1 15.55 ? C1' FAD 901 B 1 HETATM 42 C C2' FAD . . . D 2 271.838 316.792 237.681 1 15.55 ? C2' FAD 901 B 1 HETATM 43 O O2' FAD . . . D 2 272.341 315.72 236.883 1 15.55 ? O2' FAD 901 B 1 HETATM 44 C C3' FAD . . . D 2 270.325 316.64 237.858 1 15.55 ? C3' FAD 901 B 1 HETATM 45 O O3' FAD . . . D 2 270.06 315.364 238.43 1 15.55 ? O3' FAD 901 B 1 HETATM 46 C C4' FAD . . . D 2 269.494 316.781 236.581 1 15.55 ? C4' FAD 901 B 1 HETATM 47 O O4' FAD . . . D 2 269.208 318.159 236.341 1 15.55 ? O4' FAD 901 B 1 HETATM 48 C C5' FAD . . . D 2 268.193 316.009 236.65 1 15.55 ? C5' FAD 901 B 1 HETATM 49 O O5' FAD . . . D 2 268.468 314.601 236.498 1 15.55 ? O5' FAD 901 B 1 HETATM 50 P P FAD . . . D 2 267.309 313.568 236.237 1 15.55 ? P FAD 901 B 1 HETATM 51 O O1P FAD . . . D 2 266.865 312.945 237.564 1 15.55 ? O1P FAD 901 B 1 HETATM 52 O O2P FAD . . . D 2 266.222 314.196 235.451 1 15.55 ? O2P FAD 901 B 1 HETATM 53 O O3P FAD . . . D 2 268.013 312.437 235.38 1 15.55 ? O3P FAD 901 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #