data_7YX4
#
_model_server_result.job_id            U9BhTcKsAwf9VDHjdkEKsw 
_model_server_result.datetime_utc      '2024-12-21 17:48:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    7YX4 
#
_exptl.entry_id    7YX4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    30-meric 
_pdbx_struct_assembly.oligomeric_count      30 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,10,11,12,13,14,15,2,3,4,5,6,7,8,9 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.301122 -0.953586 0 0.953586 -0.301122 0 0 0 1 467.79699 73.43728 -55.51 
3 'point symmetry operation' ? ? -0.399549 0.916712 0 -0.916712 -0.399549 0 0 0 1 98.8834 481.05245 -47.58 
4 'point symmetry operation' ? ? 0.903522 -0.428541 0 0.428541 0.903522 0 0 0 1 109.1669 -68.62164 -39.65 
5 'point symmetry operation' ? ? -0.962692 -0.2706 0 0.2706 -0.962692 0 0 0 1 462.57606 352.50699 -31.72 
6 'point symmetry operation' ? ? 0.547928 0.836525 0 -0.836525 0.547928 0 0 0 1 -80.54253 267.24532 -23.79 
7 'point symmetry operation' ? ? 0.13658 -0.990629 0 0.990629 0.13658 0 0 0 1 384.90837 -25.33426 -15.86 
8 'point symmetry operation' ? ? -0.75385 0.657046 0 -0.657046 -0.75385 0 0 0 1 226.26649 501.04973 -7.93 
9 'point symmetry operation' ? ? -0.75385 -0.657046 0 0.657046 -0.75385 0 0 0 1 499.78394 229.04884 7.93 
10 'point symmetry operation' ? ? 0.13658 0.990629 0 -0.990629 0.13658 0 0 0 1 -27.47397 384.76156 15.86 
11 'point symmetry operation' ? ? 0.547928 -0.836525 0 0.836525 0.547928 0 0 0 1 267.689 -79.0554 23.79 
12 'point symmetry operation' ? ? -0.962692 0.2706 0 -0.2706 -0.962692 0 0 0 1 349.9296 464.52886 31.72 
13 'point symmetry operation' ? ? 0.903522 0.428541 0 -0.428541 0.903522 0 0 0 1 -69.22755 108.78367 39.65 
14 'point symmetry operation' ? ? -0.399549 -0.916712 0 0.916712 -0.399549 0 0 0 1 480.49522 101.55654 47.58 
15 'point symmetry operation' ? ? -0.301122 0.953586 0 -0.953586 -0.301122 0 0 0 1 70.83518 468.19807 55.51 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             51 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              51 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             51 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              51 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.037 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     7YX4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 901 901 FAD FAD . 
D 2 FAD B 1 901 901 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 299.143 210.616 224.27 1 53.5 ? PA FAD 901 B 1 
HETATM 2 O O1A FAD . . . D 2 299.407 209.613 225.319 1 53.5 ? O1A FAD 901 B 1 
HETATM 3 O O2A FAD . . . D 2 299.616 210.22 222.884 1 53.5 ? O2A FAD 901 B 1 
HETATM 4 O O5B FAD . . . D 2 297.631 210.959 224.204 1 53.5 ? O5B FAD 901 B 1 
HETATM 5 C C5B FAD . . . D 2 296.906 210.888 222.959 1 53.5 ? C5B FAD 901 B 1 
HETATM 6 C C4B FAD . . . D 2 295.723 209.968 223.11 1 53.5 ? C4B FAD 901 B 1 
HETATM 7 O O4B FAD . . . D 2 294.63 210.439 222.287 1 53.5 ? O4B FAD 901 B 1 
HETATM 8 C C3B FAD . . . D 2 295.975 208.528 222.679 1 53.5 ? C3B FAD 901 B 1 
HETATM 9 O O3B FAD . . . D 2 295.209 207.636 223.478 1 53.5 ? O3B FAD 901 B 1 
HETATM 10 C C2B FAD . . . D 2 295.478 208.524 221.237 1 53.5 ? C2B FAD 901 B 1 
HETATM 11 O O2B FAD . . . D 2 295.08 207.22 220.834 1 53.5 ? O2B FAD 901 B 1 
HETATM 12 C C1B FAD . . . D 2 294.264 209.435 221.362 1 53.5 ? C1B FAD 901 B 1 
HETATM 13 N N9A FAD . . . D 2 293.856 210.07 220.113 1 53.5 ? N9A FAD 901 B 1 
HETATM 14 C C8A FAD . . . D 2 294.658 210.708 219.205 1 53.5 ? C8A FAD 901 B 1 
HETATM 15 N N7A FAD . . . D 2 294.016 211.181 218.165 1 53.5 ? N7A FAD 901 B 1 
HETATM 16 C C5A FAD . . . D 2 292.698 210.829 218.405 1 53.5 ? C5A FAD 901 B 1 
HETATM 17 C C6A FAD . . . D 2 291.511 211.038 217.678 1 53.5 ? C6A FAD 901 B 1 
HETATM 18 N N6A FAD . . . D 2 291.458 211.682 216.51 1 53.5 ? N6A FAD 901 B 1 
HETATM 19 N N1A FAD . . . D 2 290.364 210.554 218.197 1 53.5 ? N1A FAD 901 B 1 
HETATM 20 C C2A FAD . . . D 2 290.409 209.911 219.364 1 53.5 ? C2A FAD 901 B 1 
HETATM 21 N N3A FAD . . . D 2 291.464 209.653 220.138 1 53.5 ? N3A FAD 901 B 1 
HETATM 22 C C4A FAD . . . D 2 292.585 210.141 219.599 1 53.5 ? C4A FAD 901 B 1 
HETATM 23 N N1 FAD . . . D 2 307.78 209.246 228.513 1 53.5 ? N1 FAD 901 B 1 
HETATM 24 C C2 FAD . . . D 2 308.723 209.361 229.49 1 53.5 ? C2 FAD 901 B 1 
HETATM 25 O O2 FAD . . . D 2 308.492 209.95 230.547 1 53.5 ? O2 FAD 901 B 1 
HETATM 26 N N3 FAD . . . D 2 309.973 208.81 229.303 1 53.5 ? N3 FAD 901 B 1 
HETATM 27 C C4 FAD . . . D 2 310.397 208.13 228.197 1 53.5 ? C4 FAD 901 B 1 
HETATM 28 O O4 FAD . . . D 2 311.542 207.686 228.146 1 53.5 ? O4 FAD 901 B 1 
HETATM 29 C C4X FAD . . . D 2 309.393 208.013 227.165 1 53.5 ? C4X FAD 901 B 1 
HETATM 30 N N5 FAD . . . D 2 309.708 207.382 226.082 1 53.5 ? N5 FAD 901 B 1 
HETATM 31 C C5X FAD . . . D 2 308.75 207.267 225.098 1 53.5 ? C5X FAD 901 B 1 
HETATM 32 C C6 FAD . . . D 2 309.071 206.59 223.928 1 53.5 ? C6 FAD 901 B 1 
HETATM 33 C C7 FAD . . . D 2 308.137 206.445 222.909 1 53.5 ? C7 FAD 901 B 1 
HETATM 34 C C7M FAD . . . D 2 308.523 205.707 221.656 1 53.5 ? C7M FAD 901 B 1 
HETATM 35 C C8 FAD . . . D 2 306.853 206.99 223.061 1 53.5 ? C8 FAD 901 B 1 
HETATM 36 C C8M FAD . . . D 2 305.82 206.856 221.978 1 53.5 ? C8M FAD 901 B 1 
HETATM 37 C C9 FAD . . . D 2 306.527 207.667 224.23 1 53.5 ? C9 FAD 901 B 1 
HETATM 38 C C9A FAD . . . D 2 307.467 207.813 225.24 1 53.5 ? C9A FAD 901 B 1 
HETATM 39 N N10 FAD . . . D 2 307.172 208.498 226.432 1 53.5 ? N10 FAD 901 B 1 
HETATM 40 C C10 FAD . . . D 2 308.108 208.608 227.419 1 53.5 ? C10 FAD 901 B 1 
HETATM 41 C C1' FAD . . . D 2 305.84 209.064 226.661 1 53.5 ? C1' FAD 901 B 1 
HETATM 42 C C2' FAD . . . D 2 305.682 210.48 226.134 1 53.5 ? C2' FAD 901 B 1 
HETATM 43 O O2' FAD . . . D 2 306.88 211.218 226.362 1 53.5 ? O2' FAD 901 B 1 
HETATM 44 C C3' FAD . . . D 2 304.514 211.148 226.857 1 53.5 ? C3' FAD 901 B 1 
HETATM 45 O O3' FAD . . . D 2 303.983 210.212 227.784 1 53.5 ? O3' FAD 901 B 1 
HETATM 46 C C4' FAD . . . D 2 303.368 211.594 225.955 1 53.5 ? C4' FAD 901 B 1 
HETATM 47 O O4' FAD . . . D 2 303.542 212.966 225.609 1 53.5 ? O4' FAD 901 B 1 
HETATM 48 C C5' FAD . . . D 2 302.014 211.405 226.602 1 53.5 ? C5' FAD 901 B 1 
HETATM 49 O O5' FAD . . . D 2 301.283 212.646 226.53 1 53.5 ? O5' FAD 901 B 1 
HETATM 50 P P FAD . . . D 2 299.785 212.684 226.055 1 53.5 ? P FAD 901 B 1 
HETATM 51 O O1P FAD . . . D 2 299.351 214.136 225.851 1 53.5 ? O1P FAD 901 B 1 
HETATM 52 O O2P FAD . . . D 2 298.872 211.97 226.924 1 53.5 ? O2P FAD 901 B 1 
HETATM 53 O O3P FAD . . . D 2 299.844 211.987 224.644 1 53.5 ? O3P FAD 901 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           53 
#