data_7YX5 # _model_server_result.job_id L_InR1xpBxZoqJJ6Ou8yQA _model_server_result.datetime_utc '2024-12-22 05:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7YX5 # _exptl.entry_id 7YX5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YX5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,10,11,12,13,14,15,16,17,18,19,2,20,21,22,23,24,25,26,27,28,29,3,30,4,5,6,7,8,9 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.913723 -0.406338 0 0.406338 0.913723 0 0 0 1 107.31981 -69.44196 -31.11 3 'point symmetry operation' ? ? 0.913723 0.406338 0 -0.406338 0.913723 0 0 0 1 -69.84366 107.05882 31.11 4 'point symmetry operation' ? ? -0.104095 -0.994567 0 0.994567 -0.104095 0 0 0 1 456.60825 24.68793 -31.11 5 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 357.40137 -55.92053 0 6 'point symmetry operation' ? ? 0.668806 -0.743437 0 0.743437 0.668806 0 0 0 1 233.9995 -89.2628 31.11 7 'point symmetry operation' ? ? -0.978057 -0.208338 0 0.208338 -0.978057 0 0 0 1 475.02146 385.96871 -31.11 8 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 521.02805 266.70798 0 9 'point symmetry operation' ? ? -0.500378 -0.865807 0 0.865807 -0.500378 0 0 0 1 514.60516 139.0425 31.11 10 'point symmetry operation' ? ? -0.500378 0.865807 0 -0.865807 -0.500378 0 0 0 1 137.11302 515.12262 -31.11 11 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 264.75353 522.0239 0 12 'point symmetry operation' ? ? -0.978057 0.208338 0 -0.208338 -0.978057 0 0 0 1 384.18583 476.46456 31.11 13 'point symmetry operation' ? ? 0.668806 0.743437 0 -0.743437 0.668806 0 0 0 1 -90.1391 233.66334 -31.11 14 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 -57.25952 357.1893 0 15 'point symmetry operation' ? ? -0.104095 0.994567 0 -0.994567 -0.104095 0 0 0 1 22.9766 456.69756 31.11 16 'point symmetry operation' ? ? 0.913723 -0.406338 0 -0.406338 -0.913723 0 0 0 -1 107.31981 505.44222 467.11006 17 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 436.00026 436.00006 18 'point symmetry operation' ? ? 0.913723 0.406338 0 0.406338 -0.913723 0 0 0 -1 -69.84366 328.94144 404.89006 19 'point symmetry operation' ? ? -0.104095 -0.994567 0 -0.994567 0.104095 0 0 0 -1 456.60825 411.31233 467.11006 20 'point symmetry operation' ? ? 0.309017 -0.951057 0 -0.951057 -0.309017 0 0 0 -1 357.40137 491.92079 436.00006 21 'point symmetry operation' ? ? 0.668806 -0.743437 0 -0.743437 -0.668806 0 0 0 -1 233.9995 525.26306 404.89006 22 'point symmetry operation' ? ? -0.978057 -0.208338 0 -0.208338 0.978057 0 0 0 -1 475.02146 50.03155 467.11006 23 'point symmetry operation' ? ? -0.809017 -0.587785 0 -0.587785 0.809017 0 0 0 -1 521.02805 169.29228 436.00006 24 'point symmetry operation' ? ? -0.500378 -0.865807 0 -0.865807 0.500378 0 0 0 -1 514.60516 296.95776 404.89006 25 'point symmetry operation' ? ? -0.500378 0.865807 0 0.865807 0.500378 0 0 0 -1 137.11302 -79.12236 467.11006 26 'point symmetry operation' ? ? -0.809017 0.587785 0 0.587785 0.809017 0 0 0 -1 264.75353 -86.02364 436.00006 27 'point symmetry operation' ? ? -0.978057 0.208338 0 0.208338 0.978057 0 0 0 -1 384.18583 -40.4643 404.89006 28 'point symmetry operation' ? ? 0.668806 0.743437 0 0.743437 -0.668806 0 0 0 -1 -90.1391 202.33691 467.11006 29 'point symmetry operation' ? ? 0.309017 0.951057 0 0.951057 -0.309017 0 0 0 -1 -57.25952 78.81096 436.00006 30 'point symmetry operation' ? ? -0.104095 0.994567 0 0.994567 0.104095 0 0 0 -1 22.9766 -20.6973 404.89006 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 7YX5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FAD _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id FAD _pdbx_nonpoly_scheme.auth_mon_id FAD _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 126.866 153.064 201.89 1 40.48 ? PA FAD 901 A 1 HETATM 2 O O1A FAD . . . B 2 127.384 151.83 201.25 1 40.48 ? O1A FAD 901 A 1 HETATM 3 O O2A FAD . . . B 2 126.159 152.823 203.213 1 40.48 ? O2A FAD 901 A 1 HETATM 4 O O5B FAD . . . B 2 127.994 154.135 202.124 1 40.48 ? O5B FAD 901 A 1 HETATM 5 C C5B FAD . . . B 2 128.533 154.377 203.441 1 40.48 ? C5B FAD 901 A 1 HETATM 6 C C4B FAD . . . B 2 130.019 154.107 203.456 1 40.48 ? C4B FAD 901 A 1 HETATM 7 O O4B FAD . . . B 2 130.698 155.16 204.175 1 40.48 ? O4B FAD 901 A 1 HETATM 8 C C3B FAD . . . B 2 130.447 152.804 204.123 1 40.48 ? C3B FAD 901 A 1 HETATM 9 O O3B FAD . . . B 2 131.572 152.244 203.458 1 40.48 ? O3B FAD 901 A 1 HETATM 10 C C2B FAD . . . B 2 130.827 153.253 205.532 1 40.48 ? C2B FAD 901 A 1 HETATM 11 O O2B FAD . . . B 2 131.842 152.418 206.065 1 40.48 ? O2B FAD 901 A 1 HETATM 12 C C1B FAD . . . B 2 131.431 154.621 205.255 1 40.48 ? C1B FAD 901 A 1 HETATM 13 N N9A FAD . . . B 2 131.333 155.546 206.375 1 40.48 ? N9A FAD 901 A 1 HETATM 14 C C8A FAD . . . B 2 130.228 155.788 207.143 1 40.48 ? C8A FAD 901 A 1 HETATM 15 N N7A FAD . . . B 2 130.413 156.684 208.082 1 40.48 ? N7A FAD 901 A 1 HETATM 16 C C5A FAD . . . B 2 131.735 157.06 207.917 1 40.48 ? C5A FAD 901 A 1 HETATM 17 C C6A FAD . . . B 2 132.552 157.978 208.602 1 40.48 ? C6A FAD 901 A 1 HETATM 18 N N6A FAD . . . B 2 132.135 158.717 209.632 1 40.48 ? N6A FAD 901 A 1 HETATM 19 N N1A FAD . . . B 2 133.827 158.115 208.186 1 40.48 ? N1A FAD 901 A 1 HETATM 20 C C2A FAD . . . B 2 134.248 157.381 207.155 1 40.48 ? C2A FAD 901 A 1 HETATM 21 N N3A FAD . . . B 2 133.572 156.484 206.435 1 40.48 ? N3A FAD 901 A 1 HETATM 22 C C4A FAD . . . B 2 132.314 156.369 206.869 1 40.48 ? C4A FAD 901 A 1 HETATM 23 N N1 FAD . . . B 2 121.556 146.328 196.708 1 40.48 ? N1 FAD 901 A 1 HETATM 24 C C2 FAD . . . B 2 120.941 145.855 195.588 1 40.48 ? C2 FAD 901 A 1 HETATM 25 O O2 FAD . . . B 2 120.999 146.459 194.515 1 40.48 ? O2 FAD 901 A 1 HETATM 26 N N3 FAD . . . B 2 120.235 144.672 195.641 1 40.48 ? N3 FAD 901 A 1 HETATM 27 C C4 FAD . . . B 2 120.066 143.885 196.744 1 40.48 ? C4 FAD 901 A 1 HETATM 28 O O4 FAD . . . B 2 119.407 142.851 196.671 1 40.48 ? O4 FAD 901 A 1 HETATM 29 C C4X FAD . . . B 2 120.717 144.395 197.928 1 40.48 ? C4X FAD 901 A 1 HETATM 30 N N5 FAD . . . B 2 120.61 143.713 199.014 1 40.48 ? N5 FAD 901 A 1 HETATM 31 C C5X FAD . . . B 2 121.233 144.192 200.144 1 40.48 ? C5X FAD 901 A 1 HETATM 32 C C6 FAD . . . B 2 121.127 143.464 201.323 1 40.48 ? C6 FAD 901 A 1 HETATM 33 C C7 FAD . . . B 2 121.735 143.906 202.491 1 40.48 ? C7 FAD 901 A 1 HETATM 34 C C7M FAD . . . B 2 121.596 143.094 203.75 1 40.48 ? C7M FAD 901 A 1 HETATM 35 C C8 FAD . . . B 2 122.467 145.103 202.482 1 40.48 ? C8 FAD 901 A 1 HETATM 36 C C8M FAD . . . B 2 123.138 145.609 203.729 1 40.48 ? C8M FAD 901 A 1 HETATM 37 C C9 FAD . . . B 2 122.576 145.833 201.304 1 40.48 ? C9 FAD 901 A 1 HETATM 38 C C9A FAD . . . B 2 121.959 145.389 200.142 1 40.48 ? C9A FAD 901 A 1 HETATM 39 N N10 FAD . . . B 2 122.035 146.11 198.937 1 40.48 ? N10 FAD 901 A 1 HETATM 40 C C10 FAD . . . B 2 121.443 145.631 197.806 1 40.48 ? C10 FAD 901 A 1 HETATM 41 C C1' FAD . . . B 2 122.836 147.336 198.847 1 40.48 ? C1' FAD 901 A 1 HETATM 42 C C2' FAD . . . B 2 122.05 148.615 199.077 1 40.48 ? C2' FAD 901 A 1 HETATM 43 O O2' FAD . . . B 2 120.727 148.468 198.567 1 40.48 ? O2' FAD 901 A 1 HETATM 44 C C3' FAD . . . B 2 122.773 149.759 198.366 1 40.48 ? C3' FAD 901 A 1 HETATM 45 O O3' FAD . . . B 2 123.824 149.192 197.595 1 40.48 ? O3' FAD 901 A 1 HETATM 46 C C4' FAD . . . B 2 123.395 150.803 199.29 1 40.48 ? C4' FAD 901 A 1 HETATM 47 O O4' FAD . . . B 2 122.415 151.79 199.603 1 40.48 ? O4' FAD 901 A 1 HETATM 48 C C5' FAD . . . B 2 124.618 151.477 198.707 1 40.48 ? C5' FAD 901 A 1 HETATM 49 O O5' FAD . . . B 2 124.54 152.893 198.978 1 40.48 ? O5' FAD 901 A 1 HETATM 50 P P FAD . . . B 2 125.821 153.732 199.348 1 40.48 ? P FAD 901 A 1 HETATM 51 O O1P FAD . . . B 2 125.658 155.175 198.862 1 40.48 ? O1P FAD 901 A 1 HETATM 52 O O2P FAD . . . B 2 127.006 153.028 198.864 1 40.48 ? O2P FAD 901 A 1 HETATM 53 O O3P FAD . . . B 2 125.824 153.778 200.933 1 40.48 ? O3P FAD 901 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #