data_7YX6
#
_model_server_result.job_id            EIIWTZdC5DS_avjfEB-JJg 
_model_server_result.datetime_utc      '2024-11-25 13:20:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yx6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    7YX6 
#
_exptl.entry_id    7YX6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              140.14 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-ethyl-1H-pyrimidine-2,4-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7YX6 
_cell.length_a            80.57 
_cell.length_b            80.57 
_cell.length_c            114.02 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YX6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C6 H8 N2 O2' 
_chem_comp.formula_weight    140.14 
_chem_comp.id                I6R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-ethyl-1H-pyrimidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O09 C08 I6R doub 165 n n 
N10 C08 I6R sing 166 n n 
N10 C03 I6R sing 167 n n 
C08 N07 I6R sing 168 n n 
C02 C03 I6R sing 169 n n 
C02 C01 I6R sing 170 n n 
C03 C04 I6R doub 171 n n 
N07 C05 I6R sing 172 n n 
C04 C05 I6R sing 173 n n 
C05 O06 I6R doub 174 n n 
C01 H1 I6R sing 175 n n 
C01 H2 I6R sing 176 n n 
C01 H3 I6R sing 177 n n 
C02 H4 I6R sing 178 n n 
C02 H5 I6R sing 179 n n 
N07 H8 I6R sing 180 n n 
C04 H6 I6R sing 181 n n 
N10 H7 I6R sing 182 n n 
#
_atom_sites.entry_id                     7YX6 
_atom_sites.fract_transf_matrix[1][1]    0.012412 
_atom_sites.fract_transf_matrix[1][2]    0.007166 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014332 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00877 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 601 1 SO4 SO4 . 
D 3 I6R A 1 602 601 I6R LIG . 
E 2 SO4 A 1 603 1 SO4 SO4 . 
F 4 GOL A 1 604 602 GOL GOL . 
G 2 SO4 B 1 601 2 SO4 SO4 . 
H 3 I6R B 1 602 601 I6R LIG . 
I 4 GOL B 1 603 602 GOL GOL . 
J 5 HOH A 1 701 24 HOH HOH . 
J 5 HOH A 2 702 85 HOH HOH . 
J 5 HOH A 3 703 106 HOH HOH . 
J 5 HOH A 4 704 86 HOH HOH . 
J 5 HOH A 5 705 47 HOH HOH . 
J 5 HOH A 6 706 23 HOH HOH . 
J 5 HOH A 7 707 77 HOH HOH . 
J 5 HOH A 8 708 42 HOH HOH . 
J 5 HOH A 9 709 60 HOH HOH . 
J 5 HOH A 10 710 79 HOH HOH . 
J 5 HOH A 11 711 104 HOH HOH . 
J 5 HOH A 12 712 15 HOH HOH . 
J 5 HOH A 13 713 82 HOH HOH . 
J 5 HOH A 14 714 87 HOH HOH . 
J 5 HOH A 15 715 28 HOH HOH . 
J 5 HOH A 16 716 132 HOH HOH . 
J 5 HOH A 17 717 45 HOH HOH . 
J 5 HOH A 18 718 35 HOH HOH . 
J 5 HOH A 19 719 54 HOH HOH . 
J 5 HOH A 20 720 37 HOH HOH . 
J 5 HOH A 21 721 30 HOH HOH . 
J 5 HOH A 22 722 121 HOH HOH . 
J 5 HOH A 23 723 1 HOH HOH . 
J 5 HOH A 24 724 31 HOH HOH . 
J 5 HOH A 25 725 53 HOH HOH . 
J 5 HOH A 26 726 36 HOH HOH . 
J 5 HOH A 27 727 61 HOH HOH . 
J 5 HOH A 28 728 69 HOH HOH . 
J 5 HOH A 29 729 16 HOH HOH . 
J 5 HOH A 30 730 21 HOH HOH . 
J 5 HOH A 31 731 64 HOH HOH . 
J 5 HOH A 32 732 9 HOH HOH . 
J 5 HOH A 33 733 99 HOH HOH . 
J 5 HOH A 34 734 34 HOH HOH . 
J 5 HOH A 35 735 18 HOH HOH . 
J 5 HOH A 36 736 119 HOH HOH . 
J 5 HOH A 37 737 90 HOH HOH . 
J 5 HOH A 38 738 102 HOH HOH . 
J 5 HOH A 39 739 78 HOH HOH . 
J 5 HOH A 40 740 39 HOH HOH . 
J 5 HOH A 41 741 44 HOH HOH . 
J 5 HOH A 42 742 3 HOH HOH . 
J 5 HOH A 43 743 55 HOH HOH . 
J 5 HOH A 44 744 65 HOH HOH . 
J 5 HOH A 45 745 110 HOH HOH . 
J 5 HOH A 46 746 63 HOH HOH . 
J 5 HOH A 47 747 8 HOH HOH . 
J 5 HOH A 48 748 71 HOH HOH . 
J 5 HOH A 49 749 11 HOH HOH . 
J 5 HOH A 50 750 115 HOH HOH . 
J 5 HOH A 51 751 49 HOH HOH . 
J 5 HOH A 52 752 98 HOH HOH . 
J 5 HOH A 53 753 133 HOH HOH . 
J 5 HOH A 54 754 113 HOH HOH . 
J 5 HOH A 55 755 120 HOH HOH . 
J 5 HOH A 56 756 41 HOH HOH . 
J 5 HOH A 57 757 126 HOH HOH . 
J 5 HOH A 58 758 29 HOH HOH . 
J 5 HOH A 59 759 122 HOH HOH . 
J 5 HOH A 60 760 12 HOH HOH . 
J 5 HOH A 61 761 97 HOH HOH . 
J 5 HOH A 62 762 105 HOH HOH . 
J 5 HOH A 63 763 128 HOH HOH . 
J 5 HOH A 64 764 89 HOH HOH . 
J 5 HOH A 65 765 134 HOH HOH . 
J 5 HOH A 66 766 70 HOH HOH . 
J 5 HOH A 67 767 84 HOH HOH . 
J 5 HOH A 68 768 48 HOH HOH . 
J 5 HOH A 69 769 57 HOH HOH . 
J 5 HOH A 70 770 81 HOH HOH . 
J 5 HOH A 71 771 100 HOH HOH . 
J 5 HOH A 72 772 93 HOH HOH . 
J 5 HOH A 73 773 129 HOH HOH . 
K 5 HOH B 1 701 123 HOH HOH . 
K 5 HOH B 2 702 114 HOH HOH . 
K 5 HOH B 3 703 58 HOH HOH . 
K 5 HOH B 4 704 22 HOH HOH . 
K 5 HOH B 5 705 67 HOH HOH . 
K 5 HOH B 6 706 68 HOH HOH . 
K 5 HOH B 7 707 33 HOH HOH . 
K 5 HOH B 8 708 56 HOH HOH . 
K 5 HOH B 9 709 51 HOH HOH . 
K 5 HOH B 10 710 43 HOH HOH . 
K 5 HOH B 11 711 13 HOH HOH . 
K 5 HOH B 12 712 2 HOH HOH . 
K 5 HOH B 13 713 101 HOH HOH . 
K 5 HOH B 14 714 46 HOH HOH . 
K 5 HOH B 15 715 14 HOH HOH . 
K 5 HOH B 16 716 74 HOH HOH . 
K 5 HOH B 17 717 88 HOH HOH . 
K 5 HOH B 18 718 116 HOH HOH . 
K 5 HOH B 19 719 83 HOH HOH . 
K 5 HOH B 20 720 92 HOH HOH . 
K 5 HOH B 21 721 27 HOH HOH . 
K 5 HOH B 22 722 125 HOH HOH . 
K 5 HOH B 23 723 72 HOH HOH . 
K 5 HOH B 24 724 40 HOH HOH . 
K 5 HOH B 25 725 32 HOH HOH . 
K 5 HOH B 26 726 103 HOH HOH . 
K 5 HOH B 27 727 4 HOH HOH . 
K 5 HOH B 28 728 111 HOH HOH . 
K 5 HOH B 29 729 73 HOH HOH . 
K 5 HOH B 30 730 118 HOH HOH . 
K 5 HOH B 31 731 10 HOH HOH . 
K 5 HOH B 32 732 19 HOH HOH . 
K 5 HOH B 33 733 66 HOH HOH . 
K 5 HOH B 34 734 7 HOH HOH . 
K 5 HOH B 35 735 6 HOH HOH . 
K 5 HOH B 36 736 112 HOH HOH . 
K 5 HOH B 37 737 75 HOH HOH . 
K 5 HOH B 38 738 52 HOH HOH . 
K 5 HOH B 39 739 124 HOH HOH . 
K 5 HOH B 40 740 130 HOH HOH . 
K 5 HOH B 41 741 95 HOH HOH . 
K 5 HOH B 42 742 109 HOH HOH . 
K 5 HOH B 43 743 76 HOH HOH . 
K 5 HOH B 44 744 5 HOH HOH . 
K 5 HOH B 45 745 50 HOH HOH . 
K 5 HOH B 46 746 38 HOH HOH . 
K 5 HOH B 47 747 117 HOH HOH . 
K 5 HOH B 48 748 62 HOH HOH . 
K 5 HOH B 49 749 127 HOH HOH . 
K 5 HOH B 50 750 108 HOH HOH . 
K 5 HOH B 51 751 94 HOH HOH . 
K 5 HOH B 52 752 17 HOH HOH . 
K 5 HOH B 53 753 26 HOH HOH . 
K 5 HOH B 54 754 91 HOH HOH . 
K 5 HOH B 55 755 96 HOH HOH . 
K 5 HOH B 56 756 59 HOH HOH . 
K 5 HOH B 57 757 131 HOH HOH . 
K 5 HOH B 58 758 80 HOH HOH . 
K 5 HOH B 59 759 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 I6R . . . D 3 -16.079 -24.624 11.793 1 23.38 ? C01 I6R 602 A 1 
HETATM 2 C C02 I6R . . . D 3 -16.438 -25.837 10.941 1 26.58 ? C02 I6R 602 A 1 
HETATM 3 C C03 I6R . . . D 3 -15.337 -26.874 11.089 1 24.74 ? C03 I6R 602 A 1 
HETATM 4 C C04 I6R . . . D 3 -15.626 -28.18 11.737 1 23.31 ? C04 I6R 602 A 1 
HETATM 5 C C05 I6R . . . D 3 -14.53 -29.165 11.888 1 26.78 ? C05 I6R 602 A 1 
HETATM 6 C C08 I6R . . . D 3 -12.935 -27.538 10.747 1 27.79 ? C08 I6R 602 A 1 
HETATM 7 N N07 I6R . . . D 3 -13.207 -28.848 11.401 1 32.14 ? N07 I6R 602 A 1 
HETATM 8 N N10 I6R . . . D 3 -14.015 -26.547 10.593 1 26.32 ? N10 I6R 602 A 1 
HETATM 9 O O06 I6R . . . D 3 -14.733 -30.213 12.404 1 27.5 ? O06 I6R 602 A 1 
HETATM 10 O O09 I6R . . . D 3 -11.851 -27.268 10.354 1 28.86 ? O09 I6R 602 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#