data_7YX6 # _model_server_result.job_id cv10H0ZBZ4GgIoKg03eubg _model_server_result.datetime_utc '2024-12-13 00:32:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7YX6 # _exptl.entry_id 7YX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 140.14 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-1H-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YX6 _cell.length_a 80.57 _cell.length_b 80.57 _cell.length_c 114.02 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C6 H8 N2 O2' _chem_comp.formula_weight 140.14 _chem_comp.id I6R _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-1H-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C08 I6R doub 165 n n N10 C08 I6R sing 166 n n N10 C03 I6R sing 167 n n C08 N07 I6R sing 168 n n C02 C03 I6R sing 169 n n C02 C01 I6R sing 170 n n C03 C04 I6R doub 171 n n N07 C05 I6R sing 172 n n C04 C05 I6R sing 173 n n C05 O06 I6R doub 174 n n C01 H1 I6R sing 175 n n C01 H2 I6R sing 176 n n C01 H3 I6R sing 177 n n C02 H4 I6R sing 178 n n C02 H5 I6R sing 179 n n N07 H8 I6R sing 180 n n C04 H6 I6R sing 181 n n N10 H7 I6R sing 182 n n # _atom_sites.entry_id 7YX6 _atom_sites.fract_transf_matrix[1][1] 0.012412 _atom_sites.fract_transf_matrix[1][2] 0.007166 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 1 SO4 SO4 . D 3 I6R A 1 602 601 I6R LIG . E 2 SO4 A 1 603 1 SO4 SO4 . F 4 GOL A 1 604 602 GOL GOL . G 2 SO4 B 1 601 2 SO4 SO4 . H 3 I6R B 1 602 601 I6R LIG . I 4 GOL B 1 603 602 GOL GOL . J 5 HOH A 1 701 24 HOH HOH . J 5 HOH A 2 702 85 HOH HOH . J 5 HOH A 3 703 106 HOH HOH . J 5 HOH A 4 704 86 HOH HOH . J 5 HOH A 5 705 47 HOH HOH . J 5 HOH A 6 706 23 HOH HOH . J 5 HOH A 7 707 77 HOH HOH . J 5 HOH A 8 708 42 HOH HOH . J 5 HOH A 9 709 60 HOH HOH . J 5 HOH A 10 710 79 HOH HOH . J 5 HOH A 11 711 104 HOH HOH . J 5 HOH A 12 712 15 HOH HOH . J 5 HOH A 13 713 82 HOH HOH . J 5 HOH A 14 714 87 HOH HOH . J 5 HOH A 15 715 28 HOH HOH . J 5 HOH A 16 716 132 HOH HOH . J 5 HOH A 17 717 45 HOH HOH . J 5 HOH A 18 718 35 HOH HOH . J 5 HOH A 19 719 54 HOH HOH . J 5 HOH A 20 720 37 HOH HOH . J 5 HOH A 21 721 30 HOH HOH . J 5 HOH A 22 722 121 HOH HOH . J 5 HOH A 23 723 1 HOH HOH . J 5 HOH A 24 724 31 HOH HOH . J 5 HOH A 25 725 53 HOH HOH . J 5 HOH A 26 726 36 HOH HOH . J 5 HOH A 27 727 61 HOH HOH . J 5 HOH A 28 728 69 HOH HOH . J 5 HOH A 29 729 16 HOH HOH . J 5 HOH A 30 730 21 HOH HOH . J 5 HOH A 31 731 64 HOH HOH . J 5 HOH A 32 732 9 HOH HOH . J 5 HOH A 33 733 99 HOH HOH . J 5 HOH A 34 734 34 HOH HOH . J 5 HOH A 35 735 18 HOH HOH . J 5 HOH A 36 736 119 HOH HOH . J 5 HOH A 37 737 90 HOH HOH . J 5 HOH A 38 738 102 HOH HOH . J 5 HOH A 39 739 78 HOH HOH . J 5 HOH A 40 740 39 HOH HOH . J 5 HOH A 41 741 44 HOH HOH . J 5 HOH A 42 742 3 HOH HOH . J 5 HOH A 43 743 55 HOH HOH . J 5 HOH A 44 744 65 HOH HOH . J 5 HOH A 45 745 110 HOH HOH . J 5 HOH A 46 746 63 HOH HOH . J 5 HOH A 47 747 8 HOH HOH . J 5 HOH A 48 748 71 HOH HOH . J 5 HOH A 49 749 11 HOH HOH . J 5 HOH A 50 750 115 HOH HOH . J 5 HOH A 51 751 49 HOH HOH . J 5 HOH A 52 752 98 HOH HOH . J 5 HOH A 53 753 133 HOH HOH . J 5 HOH A 54 754 113 HOH HOH . J 5 HOH A 55 755 120 HOH HOH . J 5 HOH A 56 756 41 HOH HOH . J 5 HOH A 57 757 126 HOH HOH . J 5 HOH A 58 758 29 HOH HOH . J 5 HOH A 59 759 122 HOH HOH . J 5 HOH A 60 760 12 HOH HOH . J 5 HOH A 61 761 97 HOH HOH . J 5 HOH A 62 762 105 HOH HOH . J 5 HOH A 63 763 128 HOH HOH . J 5 HOH A 64 764 89 HOH HOH . J 5 HOH A 65 765 134 HOH HOH . J 5 HOH A 66 766 70 HOH HOH . J 5 HOH A 67 767 84 HOH HOH . J 5 HOH A 68 768 48 HOH HOH . J 5 HOH A 69 769 57 HOH HOH . J 5 HOH A 70 770 81 HOH HOH . J 5 HOH A 71 771 100 HOH HOH . J 5 HOH A 72 772 93 HOH HOH . J 5 HOH A 73 773 129 HOH HOH . K 5 HOH B 1 701 123 HOH HOH . K 5 HOH B 2 702 114 HOH HOH . K 5 HOH B 3 703 58 HOH HOH . K 5 HOH B 4 704 22 HOH HOH . K 5 HOH B 5 705 67 HOH HOH . K 5 HOH B 6 706 68 HOH HOH . K 5 HOH B 7 707 33 HOH HOH . K 5 HOH B 8 708 56 HOH HOH . K 5 HOH B 9 709 51 HOH HOH . K 5 HOH B 10 710 43 HOH HOH . K 5 HOH B 11 711 13 HOH HOH . K 5 HOH B 12 712 2 HOH HOH . K 5 HOH B 13 713 101 HOH HOH . K 5 HOH B 14 714 46 HOH HOH . K 5 HOH B 15 715 14 HOH HOH . K 5 HOH B 16 716 74 HOH HOH . K 5 HOH B 17 717 88 HOH HOH . K 5 HOH B 18 718 116 HOH HOH . K 5 HOH B 19 719 83 HOH HOH . K 5 HOH B 20 720 92 HOH HOH . K 5 HOH B 21 721 27 HOH HOH . K 5 HOH B 22 722 125 HOH HOH . K 5 HOH B 23 723 72 HOH HOH . K 5 HOH B 24 724 40 HOH HOH . K 5 HOH B 25 725 32 HOH HOH . K 5 HOH B 26 726 103 HOH HOH . K 5 HOH B 27 727 4 HOH HOH . K 5 HOH B 28 728 111 HOH HOH . K 5 HOH B 29 729 73 HOH HOH . K 5 HOH B 30 730 118 HOH HOH . K 5 HOH B 31 731 10 HOH HOH . K 5 HOH B 32 732 19 HOH HOH . K 5 HOH B 33 733 66 HOH HOH . K 5 HOH B 34 734 7 HOH HOH . K 5 HOH B 35 735 6 HOH HOH . K 5 HOH B 36 736 112 HOH HOH . K 5 HOH B 37 737 75 HOH HOH . K 5 HOH B 38 738 52 HOH HOH . K 5 HOH B 39 739 124 HOH HOH . K 5 HOH B 40 740 130 HOH HOH . K 5 HOH B 41 741 95 HOH HOH . K 5 HOH B 42 742 109 HOH HOH . K 5 HOH B 43 743 76 HOH HOH . K 5 HOH B 44 744 5 HOH HOH . K 5 HOH B 45 745 50 HOH HOH . K 5 HOH B 46 746 38 HOH HOH . K 5 HOH B 47 747 117 HOH HOH . K 5 HOH B 48 748 62 HOH HOH . K 5 HOH B 49 749 127 HOH HOH . K 5 HOH B 50 750 108 HOH HOH . K 5 HOH B 51 751 94 HOH HOH . K 5 HOH B 52 752 17 HOH HOH . K 5 HOH B 53 753 26 HOH HOH . K 5 HOH B 54 754 91 HOH HOH . K 5 HOH B 55 755 96 HOH HOH . K 5 HOH B 56 756 59 HOH HOH . K 5 HOH B 57 757 131 HOH HOH . K 5 HOH B 58 758 80 HOH HOH . K 5 HOH B 59 759 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 I6R . . . D 3 -16.079 -24.624 11.793 1 23.38 ? C01 I6R 602 A 1 HETATM 2 C C02 I6R . . . D 3 -16.438 -25.837 10.941 1 26.58 ? C02 I6R 602 A 1 HETATM 3 C C03 I6R . . . D 3 -15.337 -26.874 11.089 1 24.74 ? C03 I6R 602 A 1 HETATM 4 C C04 I6R . . . D 3 -15.626 -28.18 11.737 1 23.31 ? C04 I6R 602 A 1 HETATM 5 C C05 I6R . . . D 3 -14.53 -29.165 11.888 1 26.78 ? C05 I6R 602 A 1 HETATM 6 C C08 I6R . . . D 3 -12.935 -27.538 10.747 1 27.79 ? C08 I6R 602 A 1 HETATM 7 N N07 I6R . . . D 3 -13.207 -28.848 11.401 1 32.14 ? N07 I6R 602 A 1 HETATM 8 N N10 I6R . . . D 3 -14.015 -26.547 10.593 1 26.32 ? N10 I6R 602 A 1 HETATM 9 O O06 I6R . . . D 3 -14.733 -30.213 12.404 1 27.5 ? O06 I6R 602 A 1 HETATM 10 O O09 I6R . . . D 3 -11.851 -27.268 10.354 1 28.86 ? O09 I6R 602 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #