data_7YXC # _model_server_result.job_id RY4vH5za2WxZKhsbkCtTuA _model_server_result.datetime_utc '2024-10-13 10:25:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 7YXC # _exptl.entry_id 7YXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEXAMETHASONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.62 _cell.angle_gamma 90 _cell.entry_id 7YXC _cell.length_a 86.605 _cell.length_b 52.435 _cell.length_c 69.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H29 F O5' _chem_comp.formula_weight 392.461 _chem_comp.id DEX _chem_comp.mon_nstd_flag . _chem_comp.name DEXAMETHASONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9A-FLUORO-16BETA-METHYLPREDNISOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEX doub 86 n n C1 C10 DEX sing 87 n n C1 H1 DEX sing 88 n n C2 C3 DEX sing 89 n n C2 H2 DEX sing 90 n n C3 C4 DEX sing 91 n n C3 O1 DEX doub 92 n n C4 C5 DEX doub 93 n n C4 H4 DEX sing 94 n n C5 C6 DEX sing 95 n n C5 C10 DEX sing 96 n n C6 C7 DEX sing 97 n n C6 H61 DEX sing 98 n n C6 H62 DEX sing 99 n n C7 C8 DEX sing 100 n n C7 H71 DEX sing 101 n n C7 H72 DEX sing 102 n n C8 C9 DEX sing 103 n n C8 C14 DEX sing 104 n n C8 H8 DEX sing 105 n n C9 C10 DEX sing 106 n n C9 C11 DEX sing 107 n n C9 F1 DEX sing 108 n n C10 C19 DEX sing 109 n n C11 C12 DEX sing 110 n n C11 O2 DEX sing 111 n n C11 H11 DEX sing 112 n n C12 C13 DEX sing 113 n n C12 H211 DEX sing 114 n n C12 H221 DEX sing 115 n n C13 C14 DEX sing 116 n n C13 C17 DEX sing 117 n n C13 C18 DEX sing 118 n n C14 C15 DEX sing 119 n n C14 H14 DEX sing 120 n n C15 C16 DEX sing 121 n n C15 H511 DEX sing 122 n n C15 H521 DEX sing 123 n n C16 C17 DEX sing 124 n n C16 C22 DEX sing 125 n n C16 H16 DEX sing 126 n n C17 C20 DEX sing 127 n n C17 O3 DEX sing 128 n n C18 H811 DEX sing 129 n n C18 H821 DEX sing 130 n n C18 H831 DEX sing 131 n n C19 H911 DEX sing 132 n n C19 H921 DEX sing 133 n n C19 H931 DEX sing 134 n n C20 C21 DEX sing 135 n n C20 O4 DEX doub 136 n n C21 O5 DEX sing 137 n n C21 H112 DEX sing 138 n n C21 H122 DEX sing 139 n n C22 H212 DEX sing 140 n n C22 H222 DEX sing 141 n n C22 H232 DEX sing 142 n n O2 HO2 DEX sing 143 n n O3 H3 DEX sing 144 n n O5 H5 DEX sing 145 n n # _atom_sites.entry_id 7YXC _atom_sites.fract_transf_matrix[1][1] 0.011547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DEX A 1 1001 1001 DEX DEX . D 4 PG4 A 1 1002 1501 PG4 PG4 . E 5 CO3 A 1 1003 1601 CO3 CO3 . F 5 CO3 A 1 1004 1602 CO3 CO3 . G 6 HOH A 1 1101 2006 HOH HOH . G 6 HOH A 2 1102 2011 HOH HOH . G 6 HOH A 3 1103 2001 HOH HOH . G 6 HOH A 4 1104 2007 HOH HOH . G 6 HOH A 5 1105 2021 HOH HOH . G 6 HOH A 6 1106 2022 HOH HOH . G 6 HOH A 7 1107 2008 HOH HOH . G 6 HOH A 8 1108 2015 HOH HOH . G 6 HOH A 9 1109 2023 HOH HOH . G 6 HOH A 10 1110 2010 HOH HOH . G 6 HOH A 11 1111 2005 HOH HOH . G 6 HOH A 12 1112 2002 HOH HOH . G 6 HOH A 13 1113 2018 HOH HOH . G 6 HOH A 14 1114 2009 HOH HOH . G 6 HOH A 15 1115 2016 HOH HOH . G 6 HOH A 16 1116 2020 HOH HOH . G 6 HOH A 17 1117 2024 HOH HOH . G 6 HOH A 18 1118 2013 HOH HOH . G 6 HOH A 19 1119 2004 HOH HOH . G 6 HOH A 20 1120 2017 HOH HOH . G 6 HOH A 21 1121 2003 HOH HOH . G 6 HOH A 22 1122 2014 HOH HOH . G 6 HOH A 23 1123 2019 HOH HOH . H 6 HOH R 1 101 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEX . . . C 3 6.725 -5.186 10.635 1 40.62 ? C1 DEX 1001 A 1 HETATM 2 C C2 DEX . . . C 3 6.145 -4.027 10.36 1 37.79 ? C2 DEX 1001 A 1 HETATM 3 C C3 DEX . . . C 3 6.286 -2.881 11.248 1 37.28 ? C3 DEX 1001 A 1 HETATM 4 C C4 DEX . . . C 3 6.992 -3.098 12.498 1 34.89 ? C4 DEX 1001 A 1 HETATM 5 C C5 DEX . . . C 3 7.524 -4.282 12.825 1 39.32 ? C5 DEX 1001 A 1 HETATM 6 C C6 DEX . . . C 3 8.132 -4.51 14.175 1 35.19 ? C6 DEX 1001 A 1 HETATM 7 C C7 DEX . . . C 3 7.452 -5.696 14.883 1 42.09 ? C7 DEX 1001 A 1 HETATM 8 C C8 DEX . . . C 3 7.43 -6.977 14.032 1 43.85 ? C8 DEX 1001 A 1 HETATM 9 C C9 DEX . . . C 3 6.762 -6.687 12.674 1 44.12 ? C9 DEX 1001 A 1 HETATM 10 C C10 DEX . . . C 3 7.47 -5.494 11.903 1 40.64 ? C10 DEX 1001 A 1 HETATM 11 C C11 DEX . . . C 3 6.399 -7.927 11.82 1 38.49 ? C11 DEX 1001 A 1 HETATM 12 C C12 DEX . . . C 3 5.79 -9.087 12.627 1 39.12 ? C12 DEX 1001 A 1 HETATM 13 C C13 DEX . . . C 3 6.553 -9.388 13.928 1 48.85 ? C13 DEX 1001 A 1 HETATM 14 C C14 DEX . . . C 3 6.666 -8.087 14.743 1 44.6 ? C14 DEX 1001 A 1 HETATM 15 C C15 DEX . . . C 3 7.221 -8.58 16.082 1 45.48 ? C15 DEX 1001 A 1 HETATM 16 C C16 DEX . . . C 3 6.42 -9.872 16.357 1 53.7 ? C16 DEX 1001 A 1 HETATM 17 C C17 DEX . . . C 3 5.785 -10.282 14.973 1 48.36 ? C17 DEX 1001 A 1 HETATM 18 C C18 DEX . . . C 3 7.952 -9.955 13.628 1 38.17 ? C18 DEX 1001 A 1 HETATM 19 C C19 DEX . . . C 3 8.924 -5.843 11.496 1 38.9 ? C19 DEX 1001 A 1 HETATM 20 C C20 DEX . . . C 3 5.913 -11.781 14.685 1 48.09 ? C20 DEX 1001 A 1 HETATM 21 C C21 DEX . . . C 3 4.846 -12.433 13.835 1 51.86 ? C21 DEX 1001 A 1 HETATM 22 C C22 DEX . . . C 3 5.626 -9.768 17.657 1 46.35 ? C22 DEX 1001 A 1 HETATM 23 F F1 DEX . . . C 3 5.482 -6.184 13.006 1 46.89 ? F1 DEX 1001 A 1 HETATM 24 O O1 DEX . . . C 3 5.854 -1.771 10.934 1 43.27 ? O1 DEX 1001 A 1 HETATM 25 O O2 DEX . . . C 3 7.561 -8.347 11.139 1 35.01 ? O2 DEX 1001 A 1 HETATM 26 O O3 DEX . . . C 3 4.4 -9.916 14.854 1 45.13 ? O3 DEX 1001 A 1 HETATM 27 O O4 DEX . . . C 3 6.829 -12.467 15.088 1 54.39 ? O4 DEX 1001 A 1 HETATM 28 O O5 DEX . . . C 3 5.437 -13.325 12.904 1 57.28 ? O5 DEX 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #