data_7YXE
#
_model_server_result.job_id            iyVZDqsVW5fZsjhz8kJQyg 
_model_server_result.datetime_utc      '2024-11-24 01:27:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yxe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    7YXE 
#
_exptl.entry_id    7YXE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7YXE 
_cell.length_a            80.16 
_cell.length_b            80.16 
_cell.length_c            114.04 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YXE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            J 
_struct_conn.ptnr1_label_atom_id            NA 
_struct_conn.ptnr1_label_comp_id            NA 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             NA 
_struct_conn.ptnr1_auth_seq_id              605 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            O 
_struct_conn.ptnr2_label_comp_id            HOH 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             HOH 
_struct_conn.ptnr2_auth_seq_id              723 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                3.154 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7YXE 
_atom_sites.fract_transf_matrix[1][1]    0.012475 
_atom_sites.fract_transf_matrix[1][2]    0.007202 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 I82 A 1 601 601 I82 LIG . 
D 3 SO4 A 1 602 1 SO4 SO4 . 
E 3 SO4 A 1 603 2 SO4 SO4 . 
F 2 I82 B 1 601 601 I82 LIG . 
G 4 GOL B 1 602 602 GOL GOL . 
H 3 SO4 B 1 603 3 SO4 SO4 . 
I 3 SO4 B 1 604 4 SO4 SO4 . 
J 5 NA B 1 605 1 NA NA . 
K 6 HOH A 1 701 60 HOH HOH . 
K 6 HOH A 2 702 63 HOH HOH . 
K 6 HOH A 3 703 19 HOH HOH . 
K 6 HOH A 4 704 67 HOH HOH . 
K 6 HOH A 5 705 61 HOH HOH . 
K 6 HOH A 6 706 47 HOH HOH . 
K 6 HOH A 7 707 137 HOH HOH . 
K 6 HOH A 8 708 133 HOH HOH . 
K 6 HOH A 9 709 48 HOH HOH . 
K 6 HOH A 10 710 89 HOH HOH . 
K 6 HOH A 11 711 55 HOH HOH . 
K 6 HOH A 12 712 72 HOH HOH . 
K 6 HOH A 13 713 117 HOH HOH . 
K 6 HOH A 14 714 51 HOH HOH . 
K 6 HOH A 15 715 16 HOH HOH . 
K 6 HOH A 16 716 82 HOH HOH . 
K 6 HOH A 17 717 24 HOH HOH . 
K 6 HOH A 18 718 78 HOH HOH . 
K 6 HOH A 19 719 91 HOH HOH . 
K 6 HOH A 20 720 50 HOH HOH . 
K 6 HOH A 21 721 6 HOH HOH . 
K 6 HOH A 22 722 62 HOH HOH . 
K 6 HOH A 23 723 41 HOH HOH . 
K 6 HOH A 24 724 57 HOH HOH . 
K 6 HOH A 25 725 34 HOH HOH . 
K 6 HOH A 26 726 83 HOH HOH . 
K 6 HOH A 27 727 14 HOH HOH . 
K 6 HOH A 28 728 28 HOH HOH . 
K 6 HOH A 29 729 49 HOH HOH . 
K 6 HOH A 30 730 110 HOH HOH . 
K 6 HOH A 31 731 31 HOH HOH . 
K 6 HOH A 32 732 85 HOH HOH . 
K 6 HOH A 33 733 123 HOH HOH . 
K 6 HOH A 34 734 71 HOH HOH . 
K 6 HOH A 35 735 7 HOH HOH . 
K 6 HOH A 36 736 53 HOH HOH . 
K 6 HOH A 37 737 132 HOH HOH . 
K 6 HOH A 38 738 90 HOH HOH . 
K 6 HOH A 39 739 5 HOH HOH . 
K 6 HOH A 40 740 18 HOH HOH . 
K 6 HOH A 41 741 39 HOH HOH . 
K 6 HOH A 42 742 35 HOH HOH . 
K 6 HOH A 43 743 1 HOH HOH . 
K 6 HOH A 44 744 127 HOH HOH . 
K 6 HOH A 45 745 42 HOH HOH . 
K 6 HOH A 46 746 76 HOH HOH . 
K 6 HOH A 47 747 10 HOH HOH . 
K 6 HOH A 48 748 77 HOH HOH . 
K 6 HOH A 49 749 45 HOH HOH . 
K 6 HOH A 50 750 98 HOH HOH . 
K 6 HOH A 51 751 99 HOH HOH . 
K 6 HOH A 52 752 44 HOH HOH . 
K 6 HOH A 53 753 26 HOH HOH . 
K 6 HOH A 54 754 136 HOH HOH . 
K 6 HOH A 55 755 102 HOH HOH . 
K 6 HOH A 56 756 145 HOH HOH . 
K 6 HOH A 57 757 111 HOH HOH . 
K 6 HOH A 58 758 116 HOH HOH . 
K 6 HOH A 59 759 81 HOH HOH . 
K 6 HOH A 60 760 2 HOH HOH . 
K 6 HOH A 61 761 135 HOH HOH . 
K 6 HOH A 62 762 88 HOH HOH . 
K 6 HOH A 63 763 86 HOH HOH . 
K 6 HOH A 64 764 134 HOH HOH . 
K 6 HOH A 65 765 17 HOH HOH . 
K 6 HOH A 66 766 120 HOH HOH . 
K 6 HOH A 67 767 40 HOH HOH . 
K 6 HOH A 68 768 140 HOH HOH . 
K 6 HOH A 69 769 30 HOH HOH . 
K 6 HOH A 70 770 100 HOH HOH . 
K 6 HOH A 71 771 138 HOH HOH . 
K 6 HOH A 72 772 94 HOH HOH . 
K 6 HOH A 73 773 146 HOH HOH . 
K 6 HOH A 74 774 148 HOH HOH . 
K 6 HOH A 75 775 113 HOH HOH . 
K 6 HOH A 76 776 79 HOH HOH . 
K 6 HOH A 77 777 139 HOH HOH . 
K 6 HOH A 78 778 142 HOH HOH . 
L 6 HOH B 1 701 20 HOH HOH . 
L 6 HOH B 2 702 93 HOH HOH . 
L 6 HOH B 3 703 36 HOH HOH . 
L 6 HOH B 4 704 66 HOH HOH . 
L 6 HOH B 5 705 105 HOH HOH . 
L 6 HOH B 6 706 74 HOH HOH . 
L 6 HOH B 7 707 130 HOH HOH . 
L 6 HOH B 8 708 119 HOH HOH . 
L 6 HOH B 9 709 59 HOH HOH . 
L 6 HOH B 10 710 13 HOH HOH . 
L 6 HOH B 11 711 147 HOH HOH . 
L 6 HOH B 12 712 92 HOH HOH . 
L 6 HOH B 13 713 75 HOH HOH . 
L 6 HOH B 14 714 4 HOH HOH . 
L 6 HOH B 15 715 144 HOH HOH . 
L 6 HOH B 16 716 25 HOH HOH . 
L 6 HOH B 17 717 58 HOH HOH . 
L 6 HOH B 18 718 64 HOH HOH . 
L 6 HOH B 19 719 23 HOH HOH . 
L 6 HOH B 20 720 38 HOH HOH . 
L 6 HOH B 21 721 84 HOH HOH . 
L 6 HOH B 22 722 124 HOH HOH . 
L 6 HOH B 23 723 8 HOH HOH . 
L 6 HOH B 24 724 65 HOH HOH . 
L 6 HOH B 25 725 118 HOH HOH . 
L 6 HOH B 26 726 15 HOH HOH . 
L 6 HOH B 27 727 126 HOH HOH . 
L 6 HOH B 28 728 73 HOH HOH . 
L 6 HOH B 29 729 21 HOH HOH . 
L 6 HOH B 30 730 103 HOH HOH . 
L 6 HOH B 31 731 22 HOH HOH . 
L 6 HOH B 32 732 12 HOH HOH . 
L 6 HOH B 33 733 112 HOH HOH . 
L 6 HOH B 34 734 29 HOH HOH . 
L 6 HOH B 35 735 3 HOH HOH . 
L 6 HOH B 36 736 11 HOH HOH . 
L 6 HOH B 37 737 115 HOH HOH . 
L 6 HOH B 38 738 27 HOH HOH . 
L 6 HOH B 39 739 106 HOH HOH . 
L 6 HOH B 40 740 95 HOH HOH . 
L 6 HOH B 41 741 114 HOH HOH . 
L 6 HOH B 42 742 80 HOH HOH . 
L 6 HOH B 43 743 54 HOH HOH . 
L 6 HOH B 44 744 46 HOH HOH . 
L 6 HOH B 45 745 37 HOH HOH . 
L 6 HOH B 46 746 125 HOH HOH . 
L 6 HOH B 47 747 33 HOH HOH . 
L 6 HOH B 48 748 101 HOH HOH . 
L 6 HOH B 49 749 108 HOH HOH . 
L 6 HOH B 50 750 121 HOH HOH . 
L 6 HOH B 51 751 68 HOH HOH . 
L 6 HOH B 52 752 96 HOH HOH . 
L 6 HOH B 53 753 52 HOH HOH . 
L 6 HOH B 54 754 70 HOH HOH . 
L 6 HOH B 55 755 56 HOH HOH . 
L 6 HOH B 56 756 104 HOH HOH . 
L 6 HOH B 57 757 107 HOH HOH . 
L 6 HOH B 58 758 131 HOH HOH . 
L 6 HOH B 59 759 109 HOH HOH . 
L 6 HOH B 60 760 69 HOH HOH . 
L 6 HOH B 61 761 43 HOH HOH . 
L 6 HOH B 62 762 87 HOH HOH . 
L 6 HOH B 63 763 97 HOH HOH . 
L 6 HOH B 64 764 122 HOH HOH . 
L 6 HOH B 65 765 128 HOH HOH . 
L 6 HOH B 66 766 32 HOH HOH . 
L 6 HOH B 67 767 143 HOH HOH . 
L 6 HOH B 68 768 129 HOH HOH . 
L 6 HOH B 69 769 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 19.785 -43.298 2.935 1 36.73 ? C1 GOL 602 B 1 
HETATM 2 O O1 GOL . . . G 4 18.443 -43.009 3.309 1 50.82 ? O1 GOL 602 B 1 
HETATM 3 C C2 GOL . . . G 4 20.751 -42.208 3.492 1 35.22 ? C2 GOL 602 B 1 
HETATM 4 O O2 GOL . . . G 4 20.334 -40.905 3.221 1 54.43 ? O2 GOL 602 B 1 
HETATM 5 C C3 GOL . . . G 4 22.139 -42.531 2.91 1 42.5 ? C3 GOL 602 B 1 
HETATM 6 O O3 GOL . . . G 4 22.873 -43.158 3.911 1 38.32 ? O3 GOL 602 B 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#